MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ABAYE1731	CDS		1796739	1797977	1239	+3	putative NADH-flavin oxidoreductase/NADH oxidase	2	validated/finished	no	no	0.4310	0.3123	0.59	45494.54	9.74
ABAYE1732	CDS		1797981	1799060	1080	+3	conserved hypothetical protein; putative oxidoreductase	1	validated/finished	no	no	0.4417	0.3417	0.48	38413.75	8.89
ABAYE1733	CDS		1799122	1799949	828	-1	conserved hypothetical protein; putative signal peptide	1	validated/finished	no	no	0.3901	0.2971	0.52	30432.60	7.94
ABAYE1734	CDS		1800005	1800442	438	-3	putative transcriptional regulator (MerR family)	4	validated/finished	no	no	0.3493	0.3151	0.55	16780.66	8.27
ABAYE1735	CDS		1800578	1801270	693	+2	conserved hypothetical protein	4	validated/finished	no	no	0.3939	0.3160	0.46	25731.16	5.45
ABAYE1736	CDS		1801369	1802574	1206	-1	putative oxidoreductase; putative Metal-binding Oxidoreductase	1	validated/finished	no	no	0.4320	0.3010	0.56	43292.53	4.73
ABAYE1737	CDS		1802733	1803281	549	-2	conserved hypothetical protein; putative transcriptional regulator	3	validated/finished	no	no	0.4481	0.3497	0.46	19990.10	5.84
ABAYE1738	CDS		1803480	1804499	1020	-2	conserved hypothetical protein; putative Zn-dependent hydrolase of the beta-lactamase fold	1	validated/finished	no	no	0.4294	0.3706	0.55	38743.58	6.13
ABAYE1739	CDS		1804639	1805214	576	-1	putative transcriptional regulator (TetR family)	5	validated/finished	no	no	0.4184	0.3542	0.53	21639.89	5.67
ABAYE1740	CDS		1805289	1806335	1047	-2	putative transcriptional regulator (AraC family)	3	validated/finished	no	no	0.3620	0.2665	0.48	40175.93	6.60
ABAYE1741	CDS		1806443	1807246	804	+2	putative short chain dehydrogenase	1	validated/finished	no	no	0.4204	0.2575	0.44	28916.19	9.04
ABAYE1742	CDS		1807123	1807989	867	+1	hypothetical protein; putative Acetoacetate decarboxylase domain	3	validated/finished	no	no	0.4268	0.3322	0.47	32386.32	7.88
ABAYE1743	CDS		1807979	1808872	894	+2	conserved hypothetical protein; putative metal-dependent hydrolase	3	validated/finished	no	no	0.3747	0.3389	0.49	35124.36	9.25
ABAYE1744	CDS		1808930	1810159	1230	+2	putative Oxidoreductase, FAD/FMN-binding	1	validated/finished	no	no	0.4398	0.3293	0.44	44587.76	9.42
ABAYE1746	CDS	sndH	1810591	1811898	1308	-1	L-sorbosone dehydrogenase	4	validated/finished	no	no	0.3769	0.2110	0.50	47541.03	9.08
ABAYE1747	CDS		1811911	1812336	426	-1	conserved hypothetical protein; putative membrane protein	4	validated/finished	no	no	0.2864	0.1479	0.41	16186.60	9.26
ABAYE1748	CDS		1812850	1813146	297	-1	conserved hypothetical protein	5	validated/finished	no	no	0.3704	0.2424	0.49	11401.44	5.61
ABAYE1749	CDS		1813186	1813836	651	-1	putative Isochorismatase hydrolase	4	validated/finished	no	no	0.3917	0.2673	0.65	24004.64	6.39
ABAYE1750	CDS		1813980	1814906	927	+3	putative transcriptional regulator (LysR family)	3	validated/finished	no	no	0.3711	0.2783	0.42	35236.44	6.11
ABAYE1751	CDS	gdhB	1815052	1816536	1485	+1	Quinoprotein glucose dehydrogenase-B precursor (Glucose dehydrogenase-B [pyrroloquinoline-quinone]) (Soluble glucose dehydrogenase) (s-GDH)	4	validated/finished	no	no	0.3758	0.2889	0.61	54623.54	8.94
ABAYE1752	CDS	kefBC	1816772	1818610	1839	+2	Glutathione-regulated potassium-efflux system protein	3	automatic/finished	no	no	0.4111	0.3132	0.49	66224.98	5.44
ABAYE1753	CDS		1818655	1819380	726	-1	hypothetical protein; putative signal peptide	3	validated/finished	no	no	0.2920	0.2562	0.56	28305.96	9.43
ABAYE1754	CDS		1819597	1820991	1395	-1	putative metallopeptidase	3	validated/finished	no	no	0.3892	0.2882	0.56	51005.40	7.03
ABAYE1756	CDS		1821780	1822472	693	+3	putative transcriptional regulator (TetR family)	5	validated/finished	no	no	0.3377	0.3203	0.49	26865.64	9.52
ABAYE1757	CDS		1822552	1823067	516	+1	hypothetical protein	3	validated/finished	no	no	0.2578	0.1860	0.50	20337.07	5.25
ABAYE1758	CDS		1823127	1823831	705	+3	hypothetical protein; putative membrane protein	4	validated/finished	no	no	0.2865	0.2340	0.47	27890.44	8.57
ABAYE1759	CDS		1823857	1824336	480	+1	conserved hypothetical protein	5	validated/finished	no	no	0.3646	0.2438	0.46	18327.97	5.72
ABAYE1760	CDS		1824436	1824942	507	+1	conserved hypothetical protein	3	validated/finished	no	no	0.3235	0.2781	0.60	19952.60	4.15
ABAYE1761	CDS		1825009	1825488	480	+1	conserved hypothetical protein	5	validated/finished	no	no	0.3458	0.2438	0.50	18319.78	4.21
ABAYE1763	CDS		1825931	1826242	312	+2	hypothetical protein; putative signal peptide	3	validated/finished	no	no	0.3173	0.2019	0.64	11315.44	9.08
ABAYE1764	fCDS		1826452	1826709	258	+1	fragment of conserved hypothetical protein (part 1)	4	validated/finished	no	pseudo	0.3140	0.2209	0.60	10416.50	4.79
ABAYE_ISAba1_7	IS	ISAba1	1826685	1827864	1180	+1	Insertion Sequence ISAba1, IS4 family		automatic/finished		no
ABAYE1765	fCDS		1826756	1827325	570	+2	transposase of ISAba1, IS4 family (ORF 1)	5	automatic/finished	no	frameshift	0.3561	0.3737	0.50	22534.91	10.02
ABAYE1766	fCDS		1827400	1827846	447	+1	transposase of ISAba1, IS4 family (ORF 2)	5	automatic/finished	no	frameshift	0.3826	0.3423	0.39	17295.76	9.87
ABAYE1767	fCDS		1827893	1828396	504	+2	fragment of conserved hypothetical protein (part 2)	5	validated/finished	no	pseudo	0.3115	0.2381	0.55	19340.14	4.74
ABAYE1768	CDS		1828512	1829852	1341	-2	putative Permease of the major facilitator	1	validated/finished	no	no	0.3863	0.3445	0.54	48977.68	9.56
ABAYE1769	CDS		1829862	1830680	819	-2	conserved hypothetical protein; putative metal-dependent hydrolase	3	validated/finished	no	no	0.3932	0.3590	0.52	31282.32	6.25
ABAYE1770	CDS		1830682	1831971	1290	-1	conserved hypothetical protein; putative membrane protein	1	validated/finished	no	no	0.3837	0.3535	0.50	46270.32	9.42
ABAYE1771	CDS		1832083	1832814	732	+1	putative transcriptional regulator (GntR family)	1	validated/finished	no	no	0.3743	0.3074	0.48	28549.76	6.06
ABAYE1772	CDS		1832908	1833786	879	-1	conserved hypothetical protein; putative regucalcin family protein	3	validated/finished	no	no	0.3914	0.2628	0.51	32921.78	4.77
ABAYE1773	CDS		1834083	1835426	1344	+3	putative Permease of the major facilitator superfamily	1	validated/finished	no	no	0.4070	0.3259	0.48	49090.44	8.74
ABAYE1774	CDS		1835527	1836459	933	-1	putative transcriptional regulator (LysR family)	3	validated/finished	no	no	0.4051	0.3215	0.45	35530.30	6.34
ABAYE1775	CDS		1836559	1836993	435	+1	conserved hypothetical protein; putative membrane protein	1	validated/finished	no	no	0.4253	0.3517	0.42	15273.04	9.87
ABAYE1776	CDS		1837003	1837461	459	+1	conserved hypothetical protein; putative membrane protein	4	validated/finished	no	no	0.3769	0.2876	0.48	16407.14	8.66

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ABAYE1731

CDS

1796739

1797977

1239

putative NADH-flavin oxidoreductase/NADH oxidase

validated/finished

0.4310

0.3123

0.59

45494.54

9.74

ABAYE1732

CDS

1797981

1799060

1080

conserved hypothetical protein; putative oxidoreductase

validated/finished

0.4417

0.3417

0.48

38413.75

8.89

ABAYE1733

CDS

1799122

1799949

828

-1

conserved hypothetical protein; putative signal peptide

validated/finished

0.3901

0.2971

0.52

30432.60

7.94

ABAYE1734

CDS

1800005

1800442

438

-3

putative transcriptional regulator (MerR family)

validated/finished

0.3493

0.3151

0.55

16780.66

8.27

ABAYE1735

CDS

1800578

1801270

693

conserved hypothetical protein

validated/finished

0.3939

0.3160

0.46

25731.16

5.45

ABAYE1736

CDS

1801369

1802574

1206

-1

putative oxidoreductase; putative Metal-binding Oxidoreductase

validated/finished

0.4320

0.3010

0.56

43292.53

4.73

ABAYE1737

CDS

1802733

1803281

549

-2

conserved hypothetical protein; putative transcriptional regulator

validated/finished

0.4481

0.3497

0.46

19990.10

5.84

ABAYE1738

CDS

1803480

1804499

1020

-2

conserved hypothetical protein; putative Zn-dependent hydrolase of the beta-lactamase fold

validated/finished

0.4294

0.3706

0.55

38743.58

6.13

ABAYE1739

CDS

1804639

1805214

576

-1

putative transcriptional regulator (TetR family)

validated/finished

0.4184

0.3542

0.53

21639.89

5.67

ABAYE1740

CDS

1805289

1806335

1047

-2

putative transcriptional regulator (AraC family)

validated/finished

0.3620

0.2665

0.48

40175.93

6.60

ABAYE1741

CDS

1806443

1807246

804

putative short chain dehydrogenase

validated/finished

0.4204

0.2575

0.44

28916.19

9.04

ABAYE1742

CDS

1807123

1807989

867

hypothetical protein; putative Acetoacetate decarboxylase domain

validated/finished

0.4268

0.3322

0.47

32386.32

7.88

ABAYE1743

CDS

1807979

1808872

894

conserved hypothetical protein; putative metal-dependent hydrolase

validated/finished

0.3747

0.3389

0.49

35124.36

9.25

ABAYE1744

CDS

1808930

1810159

1230

putative Oxidoreductase, FAD/FMN-binding

validated/finished

0.4398

0.3293

0.44

44587.76

9.42

ABAYE1746

CDS

sndH

1810591

1811898

1308

-1

L-sorbosone dehydrogenase

validated/finished

0.3769

0.2110

0.50

47541.03

9.08

ABAYE1747

CDS

1811911

1812336

426

-1

conserved hypothetical protein; putative membrane protein

validated/finished

0.2864

0.1479

0.41

16186.60

9.26

ABAYE1748

CDS

1812850

1813146

297

-1

conserved hypothetical protein

validated/finished

0.3704

0.2424

0.49

11401.44

5.61

ABAYE1749

CDS

1813186

1813836

651

-1

putative Isochorismatase hydrolase

validated/finished

0.3917

0.2673

0.65

24004.64

6.39

ABAYE1750

CDS

1813980

1814906

927

putative transcriptional regulator (LysR family)

validated/finished

0.3711

0.2783

0.42

35236.44

6.11

ABAYE1751

CDS

gdhB

1815052

1816536

1485

Quinoprotein glucose dehydrogenase-B precursor (Glucose dehydrogenase-B [pyrroloquinoline-quinone]) (Soluble glucose dehydrogenase) (s-GDH)

validated/finished

0.3758

0.2889

0.61

54623.54

8.94

ABAYE1752

CDS

kefBC

1816772

1818610

1839

Glutathione-regulated potassium-efflux system protein

automatic/finished

0.4111

0.3132

0.49

66224.98

5.44

ABAYE1753

CDS

1818655

1819380

726

-1

hypothetical protein; putative signal peptide

validated/finished

0.2920

0.2562

0.56

28305.96

9.43

ABAYE1754

CDS

1819597

1820991

1395

-1

putative metallopeptidase

validated/finished

0.3892

0.2882

0.56

51005.40

7.03

ABAYE1756

CDS

1821780

1822472

693

putative transcriptional regulator (TetR family)

validated/finished

0.3377

0.3203

0.49

26865.64

9.52

ABAYE1757

CDS

1822552

1823067

516

hypothetical protein

validated/finished

0.2578

0.1860

0.50

20337.07

5.25

ABAYE1758

CDS

1823127

1823831

705

hypothetical protein; putative membrane protein

validated/finished

0.2865

0.2340

0.47

27890.44

8.57

ABAYE1759

CDS

1823857

1824336

480

conserved hypothetical protein

validated/finished

0.3646

0.2438

0.46

18327.97

5.72

ABAYE1760

CDS

1824436

1824942

507

conserved hypothetical protein

validated/finished

0.3235

0.2781

0.60

19952.60

4.15

ABAYE1761

CDS

1825009

1825488

480

conserved hypothetical protein

validated/finished

0.3458

0.2438

0.50

18319.78

4.21

ABAYE1763

CDS

1825931

1826242

312

hypothetical protein; putative signal peptide

validated/finished

0.3173

0.2019

0.64

11315.44

9.08

ABAYE1764

fCDS

1826452

1826709

258

fragment of conserved hypothetical protein (part 1)

validated/finished

pseudo

0.3140

0.2209

0.60

10416.50

4.79

ABAYE_ISAba1_7

ISAba1

1826685

1827864

1180

Insertion Sequence ISAba1, IS4 family

automatic/finished

ABAYE1765

fCDS

1826756

1827325

570

transposase of ISAba1, IS4 family (ORF 1)

automatic/finished

frameshift

0.3561

0.3737

0.50

22534.91

10.02

ABAYE1766

fCDS

1827400

1827846

447

transposase of ISAba1, IS4 family (ORF 2)

automatic/finished

frameshift

0.3826

0.3423

0.39

17295.76

9.87

ABAYE1767

fCDS

1827893

1828396

504

fragment of conserved hypothetical protein (part 2)

validated/finished

pseudo

0.3115

0.2381

0.55

19340.14

4.74

ABAYE1768

CDS

1828512

1829852

1341

-2

putative Permease of the major facilitator

validated/finished

0.3863

0.3445

0.54

48977.68

9.56

ABAYE1769

CDS

1829862

1830680

819

-2

conserved hypothetical protein; putative metal-dependent hydrolase

validated/finished

0.3932

0.3590

0.52

31282.32

6.25

ABAYE1770

CDS

1830682

1831971

1290

-1

conserved hypothetical protein; putative membrane protein

validated/finished

0.3837

0.3535

0.50

46270.32

9.42

ABAYE1771

CDS

1832083

1832814

732

putative transcriptional regulator (GntR family)

validated/finished

0.3743

0.3074

0.48

28549.76

6.06

ABAYE1772

CDS

1832908

1833786

879

-1

conserved hypothetical protein; putative regucalcin family protein

validated/finished

0.3914

0.2628

0.51

32921.78

4.77

ABAYE1773

CDS

1834083

1835426

1344

putative Permease of the major facilitator superfamily

validated/finished

0.4070

0.3259

0.48

49090.44

8.74

ABAYE1774

CDS

1835527

1836459

933

-1

putative transcriptional regulator (LysR family)

validated/finished

0.4051

0.3215

0.45

35530.30

6.34

ABAYE1775

CDS

1836559

1836993

435

conserved hypothetical protein; putative membrane protein

validated/finished

0.4253

0.3517

0.42

15273.04

9.87

ABAYE1776

CDS

1837003

1837461

459

conserved hypothetical protein; putative membrane protein

validated/finished

0.3769

0.2876

0.48

16407.14

8.66

Id	Begin	End	Comments
RPTR1387037	1815072	1816536	1 repeats
RPTR1387038	1821278	1822449	6 repeats
RPTR1387039	1826641	1827886	20 repeats

Sequence

Begin

End

Comments

RPTR1387037

1815072

1816536

1 repeats

RPTR1387038

1821278

1822449

6 repeats

RPTR1387039

1826641

1827886

20 repeats

Acinetobacter baumannii AYE - chromosome ABAYE.1 Public

(sequence length : 3936291 bases)