MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ABAYE1334	CDS	pqiA-1	1395113	1395730	618	+2	paraquat-inducible protein A (part 1)	5	validated/finished	no	no	0.4078	0.3981	0.40	23229.30	9.11
ABAYE1335	CDS	pqiA-2	1395718	1396524	807	+1	paraquat-inducible protein A (part 2)	1	validated/finished	no	no	0.3804	0.3383	0.49	29966.12	9.33
ABAYE1336	CDS	pqiB	1396499	1398199	1701	+2	paraquat-inducible protein	1	validated/finished	no	no	0.4198	0.3369	0.52	62527.86	6.21
ABAYE1337	CDS		1398138	1398896	759	+3	conserved hypothetical protein; putative signal peptide	3	validated/finished	no	no	0.4163	0.3755	0.44	27414.18	9.68
ABAYE1338	CDS		1398953	1399354	402	-3	conserved hypothetical protein; putative transthyretin domain	5	validated/finished	no	no	0.3806	0.3731	0.47	15117.59	9.13
ABAYE1339	CDS		1399368	1399856	489	-2	conserved hypothetical protein; putative signal peptide	3	validated/finished	no	no	0.4335	0.3804	0.45	17110.72	8.62
ABAYE1340	CDS		1399946	1400632	687	+2	putative Two component heavy metal response transcriptional regulator	1	validated/finished	no	no	0.3828	0.4017	0.46	26532.02	7.93
ABAYE1341	CDS		1400629	1402032	1404	+1	putative heavy metal sensor kinase	3	validated/finished	no	no	0.3782	0.3526	0.51	54088.48	6.40
ABAYE1342	CDS		1402129	1402692	564	+1	Outer membrane lipoprotein Blc	3	automatic/finished	no	no	0.3830	0.3191	0.59	20779.01	9.32
ABAYE1343	CDS	desC	1402812	1403783	972	+3	delta 9 acyl-lipid fatty acid desaturase	1	validated/finished	no	no	0.3961	0.3673	0.53	37889.54	9.28
ABAYE1344	CDS		1403780	1405042	1263	+2	Amine oxidase, flavin-containing	3	automatic/finished	no	no	0.4086	0.3610	0.50	48748.16	5.94
ABAYE1345	CDS		1405064	1405855	792	+2	conserved protein of unknown function	3	automatic/finished	no	no	0.3725	0.3485	0.48	31639.46	9.48
ABAYE1346	CDS	cfa	1405852	1407051	1200	+1	cyclopropane-fatty-acyl-phospholipid synthase	3	validated/finished	no	no	0.3892	0.3425	0.54	45323.22	5.93
ABAYE1347	CDS		1407081	1407860	780	+3	S5A_REDUCTASE domain-containing protein	1	automatic/finished	no	no	0.3769	0.3385	0.54	30554.12	9.60
ABAYE1348	CDS		1407869	1408915	1047	+2	Cyclopropane-fatty-acyl-phospholipid synthase	3	automatic/finished	no	no	0.4031	0.3725	0.54	41057.52	6.36
ABAYE1349	CDS		1408948	1410276	1329	+1	putative two-component system sensor protein (ColS-like)	3	validated/finished	no	no	0.3928	0.3251	0.48	50498.04	8.55
ABAYE1350	CDS		1410273	1410968	696	-2	putative Transcriptional regulatory protein CusR	3	automatic/finished	no	no	0.3980	0.3233	0.51	26250.35	5.63
ABAYE1351	CDS		1410986	1411480	495	-3	Chalcone_isomerase domain-containing protein	4	automatic/finished	no	no	0.3434	0.3091	0.52	18863.92	9.54
ABAYE1352	CDS		1411447	1412019	573	-1	Putative lipoprotein	3	automatic/finished	no	no	0.3874	0.3508	0.46	21422.60	8.82
ABAYE1353	CDS		1412174	1412680	507	-3	putative acetyltransferase; putative modification of 30S ribosomal subunit protein S5 (RIMJ)(acetylation of N-terminal alanine)	1	validated/finished	no	no	0.2998	0.2249	0.59	19599.82	5.86
ABAYE1354	CDS		1412820	1413548	729	+3	putative Aspartate/Glutamate racemase	3	validated/finished	no	no	0.3923	0.3292	0.48	26548.60	5.39
ABAYE1355	CDS		1413563	1414474	912	-3	putative membrane protein	3	validated/finished	no	no	0.3673	0.3421	0.51	33211.50	9.47
ABAYE1356	CDS	sndH	1414825	1416192	1368	+1	L-sorbosone dehydrogenase	1	validated/finished	no	no	0.4364	0.2917	0.50	49427.93	8.17

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ABAYE1334

CDS

pqiA-1

1395113

1395730

618

paraquat-inducible protein A (part 1)

validated/finished

0.4078

0.3981

0.40

23229.30

9.11

ABAYE1335

CDS

pqiA-2

1395718

1396524

807

paraquat-inducible protein A (part 2)

validated/finished

0.3804

0.3383

0.49

29966.12

9.33

ABAYE1336

CDS

pqiB

1396499

1398199

1701

paraquat-inducible protein

validated/finished

0.4198

0.3369

0.52

62527.86

6.21

ABAYE1337

CDS

1398138

1398896

759

conserved hypothetical protein; putative signal peptide

validated/finished

0.4163

0.3755

0.44

27414.18

9.68

ABAYE1338

CDS

1398953

1399354

402

-3

conserved hypothetical protein; putative transthyretin domain

validated/finished

0.3806

0.3731

0.47

15117.59

9.13

ABAYE1339

CDS

1399368

1399856

489

-2

conserved hypothetical protein; putative signal peptide

validated/finished

0.4335

0.3804

0.45

17110.72

8.62

ABAYE1340

CDS

1399946

1400632

687

putative Two component heavy metal response transcriptional regulator

validated/finished

0.3828

0.4017

0.46

26532.02

7.93

ABAYE1341

CDS

1400629

1402032

1404

putative heavy metal sensor kinase

validated/finished

0.3782

0.3526

0.51

54088.48

6.40

ABAYE1342

CDS

1402129

1402692

564

Outer membrane lipoprotein Blc

automatic/finished

0.3830

0.3191

0.59

20779.01

9.32

ABAYE1343

CDS

desC

1402812

1403783

972

delta 9 acyl-lipid fatty acid desaturase

validated/finished

0.3961

0.3673

0.53

37889.54

9.28

ABAYE1344

CDS

1403780

1405042

1263

Amine oxidase, flavin-containing

automatic/finished

0.4086

0.3610

0.50

48748.16

5.94

ABAYE1345

CDS

1405064

1405855

792

conserved protein of unknown function

automatic/finished

0.3725

0.3485

0.48

31639.46

9.48

ABAYE1346

CDS

cfa

1405852

1407051

1200

cyclopropane-fatty-acyl-phospholipid synthase

validated/finished

0.3892

0.3425

0.54

45323.22

5.93

ABAYE1347

CDS

1407081

1407860

780

S5A_REDUCTASE domain-containing protein

automatic/finished

0.3769

0.3385

0.54

30554.12

9.60

ABAYE1348

CDS

1407869

1408915

1047

Cyclopropane-fatty-acyl-phospholipid synthase

automatic/finished

0.4031

0.3725

0.54

41057.52

6.36

ABAYE1349

CDS

1408948

1410276

1329

putative two-component system sensor protein (ColS-like)

validated/finished

0.3928

0.3251

0.48

50498.04

8.55

ABAYE1350

CDS

1410273

1410968

696

-2

putative Transcriptional regulatory protein CusR

automatic/finished

0.3980

0.3233

0.51

26250.35

5.63

ABAYE1351

CDS

1410986

1411480

495

-3

Chalcone_isomerase domain-containing protein

automatic/finished

0.3434

0.3091

0.52

18863.92

9.54

ABAYE1352

CDS

1411447

1412019

573

-1

Putative lipoprotein

automatic/finished

0.3874

0.3508

0.46

21422.60

8.82

ABAYE1353

CDS

1412174

1412680

507

-3

putative acetyltransferase; putative modification of 30S ribosomal subunit protein S5 (RIMJ)(acetylation of N-terminal alanine)

validated/finished

0.2998

0.2249

0.59

19599.82

5.86

ABAYE1354

CDS

1412820

1413548

729

putative Aspartate/Glutamate racemase

validated/finished

0.3923

0.3292

0.48

26548.60

5.39

ABAYE1355

CDS

1413563

1414474

912

-3

putative membrane protein

validated/finished

0.3673

0.3421

0.51

33211.50

9.47

ABAYE1356

CDS

sndH

1414825

1416192

1368

L-sorbosone dehydrogenase

validated/finished

0.4364

0.2917

0.50

49427.93

8.17

Acinetobacter baumannii AYE - chromosome ABAYE.1 Public

(sequence length : 3936291 bases)