MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ABAYE1210	CDS	rnz	1296002	1296958	957	-3	Ribonuclease Z (RNase Z) (tRNA 3 endonuclease)	3	validated/finished	no	no	0.3762	0.2539	0.52	35784.46	6.44
ABAYE1211	CDS		1297156	1297809	654	-1	conserved protein of unknown function	2	automatic/finished	no	no	0.4113	0.2844	0.66	23882.70	6.35
ABAYE1212	CDS	yaaA	1297909	1298694	786	+1	peroxide stress resistance protein YaaA	3	automatic/finished	no	no	0.3562	0.2901	0.66	30035.21	5.92
ABAYE1214	CDS	thiG	1298892	1299677	786	-2	1-deoxy-D-xylulose 5-phosphate:thiol sulfurtransferase	1	automatic/finished	no	no	0.4135	0.2786	0.63	27761.99	4.96
ABAYE1215	CDS	thiS	1299691	1299888	198	-1	Thiamine biosynthesis protein ThiS	3	automatic/finished	no	no	0.4141	0.3788	0.58	7289.04	5.43
ABAYE1216	CDS		1299902	1300267	366	-3	conserved membrane protein of unknown function	1	automatic/finished	no	no	0.4344	0.4016	0.54	13174.41	9.52
ABAYE1217	CDS	rpoH	1300379	1301245	867	-3	RNA polymerase, sigma 32 (sigma H) factor	1	automatic/finished	no	no	0.4164	0.3322	0.63	32830.84	5.19
ABAYE1218	CDS		1301379	1301624	246	-2	putative enzyme	3	automatic/finished	no	no	0.3415	0.2439	0.61	9322.52	7.07
ABAYE1219	CDS	cspC	1301999	1302211	213	+2	stress protein, member of the CspA family	4	automatic/finished	no	no	0.4413	0.2958	0.76	7880.42	6.94
ABAYE1220	CDS	rhlB	1302315	1303466	1152	+3	ATP-dependent RNA helicase RhlB	1	automatic/finished	no	no	0.3837	0.2656	0.59	43586.46	7.26
ABAYE1221	CDS		1303504	1303884	381	-1	conserved exported protein of unknown function	4	automatic/finished	no	no	0.3543	0.2362	0.59	13281.76	9.00
ABAYE1222	CDS		1304088	1304663	576	+3	Putative NAD(P)H nitroreductase	3	automatic/finished	no	no	0.4219	0.2656	0.57	21018.25	6.53
ABAYE1223	CDS	gpsA	1304698	1305771	1074	+1	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	3	automatic/finished	no	no	0.3994	0.2458	0.62	38534.73	5.56
ABAYE1224	CDS		1305828	1306283	456	+3	Phosphohistidine phosphatase SixA	3	automatic/finished	no	no	0.3904	0.2566	0.52	16778.66	5.62
ABAYE1225	CDS		1306511	1307530	1020	+2	putative integrase/recombinase protein	3	validated/finished	no	no	0.3667	0.3206	0.45	39774.71	9.68
ABAYE1226	CDS		1307527	1307817	291	-1	conserved hypothetical protein	4	validated/finished	no	no	0.4158	0.3505	0.45	10634.86	9.75
ABAYE1227	CDS		1307818	1308081	264	-1	hypothetical protein	4	validated/finished	no	no	0.3371	0.3295	0.48	9816.84	5.75
ABAYE1228	CDS		1308078	1308590	513	-2	hypothetical protein	4	validated/finished	no	no	0.3918	0.3567	0.53	19739.44	5.18
ABAYE1229	CDS		1308583	1308951	369	-1	hypothetical protein; putative phage related protein	4	validated/finished	no	no	0.3767	0.3902	0.46	14403.18	9.26
ABAYE1230	CDS		1308948	1309607	660	-2	conserved hypothetical protein	4	validated/finished	no	no	0.4136	0.4091	0.56	25642.40	6.17
ABAYE1231	CDS		1309604	1310542	939	-3	hypothetical protein	1	validated/finished	no	no	0.4175	0.2556	0.60	34397.52	5.59
ABAYE1232	CDS		1310559	1310741	183	-2	hypothetical protein	5	validated/finished	no	no	0.4208	0.3279	0.48	6929.76	5.19
ABAYE1233	CDS		1310728	1311072	345	-1	hypothetical protein	3	validated/finished	no	no	0.3971	0.3478	0.42	12689.14	9.06
ABAYE1234	CDS		1311026	1311403	378	-3	hypothetical protein; putative exported protein	4	validated/finished	no	no	0.3968	0.3016	0.60	13972.16	4.30
ABAYE1235	CDS		1311611	1311964	354	-3	hypothetical protein	4	validated/finished	no	no	0.3051	0.2373	0.37	13992.07	9.82
ABAYE1236	CDS		1311964	1312659	696	-1	conserved hypothetical protein; putative repressor	1	validated/finished	no	no	0.3693	0.2543	0.49	25511.96	5.38
ABAYE1237	CDS		1312755	1313015	261	+3	hypothetical protein	5	validated/finished	no	no	0.3410	0.2299	0.51	9395.50	9.63
ABAYE1238	CDS		1313025	1313351	327	+3	hypothetical protein	5	validated/finished	no	no	0.4190	0.4220	0.45	12332.88	6.92
ABAYE1239	CDS		1313367	1314227	861	+3	hypothetical protein	4	validated/finished	no	no	0.3821	0.3310	0.55	32556.22	5.68
ABAYE1240	CDS		1314215	1314958	744	+2	conserved hypothetical protein; putative Phage replication protein	4	validated/finished	no	no	0.4395	0.4395	0.53	27942.85	8.18
ABAYE1241	CDS		1314928	1315143	216	+1	hypothetical protein	4	validated/finished	no	no	0.4120	0.5000	0.49	8388.51	6.94
ABAYE1242	CDS		1315140	1315292	153	+3	hypothetical protein	3	validated/finished	no	no	0.4183	0.3725	0.45	5694.44	9.62
ABAYE1243	CDS		1315289	1315795	507	+2	putative Holiday-junction resolvase	5	validated/finished	no	no	0.4043	0.3373	0.49	19161.26	9.18
ABAYE1244	CDS		1315799	1316209	411	+2	hypothetical protein	4	validated/finished	no	no	0.4501	0.4088	0.52	16015.50	6.18
ABAYE1245	CDS		1316206	1316862	657	+1	conserved hypothetical protein; putative phage related protein	3	validated/finished	no	no	0.4384	0.3288	0.54	24538.36	8.71
ABAYE1246	CDS		1316817	1317239	423	+3	hypothetical protein	4	validated/finished	no	no	0.4303	0.4326	0.46	15824.34	4.60
ABAYE1247	CDS		1317232	1317411	180	+1	hypothetical protein	4	validated/finished	no	no	0.4000	0.3667	0.50	6731.46	9.02
ABAYE1248	CDS		1317378	1317662	285	+3	hypothetical protein	4	validated/finished	no	no	0.4140	0.3158	0.47	10403.12	4.44
ABAYE1249	CDS		1317655	1317987	333	+1	hypothetical protein	3	validated/finished	no	no	0.4384	0.3964	0.53	12521.68	5.02
ABAYE1251	CDS		1317991	1318440	450	+1	conserved hypothetical protein	5	validated/finished	no	no	0.4178	0.4067	0.42	17672.12	4.83
ABAYE1252	CDS		1318383	1318742	360	+3	hypothetical protein	5	validated/finished	no	no	0.4361	0.3667	0.48	13596.00	6.07
ABAYE1253	CDS		1318796	1319332	537	+2	hypothetical protein	5	validated/finished	no	no	0.3184	0.3184	0.51	21070.42	4.95
ABAYE1254	CDS		1319407	1319748	342	+1	hypothetical protein	4	validated/finished	no	no	0.4591	0.2982	0.61	12226.85	4.68
ABAYE1255	CDS		1319748	1319978	231	+3	hypothetical protein	2	validated/finished	no	no	0.4502	0.2468	0.58	7599.10	8.94
ABAYE1256	CDS		1319980	1321623	1644	+1	conserved hypothetical protein; putative phage related protein	1	validated/finished	no	no	0.4605	0.3814	0.53	61081.00	5.33
ABAYE1257	CDS		1321620	1322105	486	+3	hypothetical protein; putative exported protein	5	validated/finished	no	no	0.4362	0.4136	0.47	18540.16	5.16
ABAYE1258	CDS		1322098	1322721	624	+1	hypothetical protein	3	validated/finished	no	no	0.4375	0.3462	0.61	23177.16	4.23
ABAYE1259	CDS		1322733	1323632	900	+3	conserved hypothetical protein	4	validated/finished	no	no	0.4189	0.3533	0.68	32619.72	6.15
ABAYE1260	CDS		1323708	1323878	171	+3	hypothetical protein	4	validated/finished	no	no	0.4035	0.3509	0.50	6450.08	4.56
ABAYE1261	CDS		1323944	1324504	561	+2	conserved hypothetical protein; putative phage related protein	3	validated/finished	no	no	0.4296	0.4011	0.52	21207.10	5.09
ABAYE1262	CDS		1324489	1326582	2094	+1	hypothetical protein; putative phage related protein	4	validated/finished	no	no	0.4169	0.3410	0.57	76712.41	5.25
ABAYE1263	CDS		1326572	1327036	465	+2	conserved hypothetical protein; putative phage related acetyltransferase	4	validated/finished	no	no	0.3957	0.3548	0.51	17532.38	5.62
ABAYE1264	CDS		1327039	1327434	396	+1	hypothetical protein	4	validated/finished	no	no	0.4545	0.3561	0.59	13475.46	9.07
ABAYE1265	CDS		1327425	1329476	2052	+3	hypothetical protein	3	validated/finished	no	no	0.4094	0.3480	0.54	76253.62	8.97
ABAYE1266	CDS		1329473	1332337	2865	+2	hypothetical protein; putative phage related protein	4	validated/finished	no	no	0.4283	0.3099	0.55	104012.98	4.77
ABAYE1267	CDS		1332425	1332682	258	+2	hypothetical protein	5	validated/finished	no	no	0.2907	0.2442	0.57	9863.69	6.25
ABAYE1268	CDS		1332747	1335272	2526	+3	conserved hypothetical protein; putative phage related protein	3	validated/finished	no	no	0.4256	0.3373	0.53	92583.76	6.73
ABAYE1269	CDS		1335269	1335628	360	+2	hypothetical protein	3	validated/finished	no	no	0.3361	0.2917	0.47	13796.32	8.93
ABAYE1270	CDS		1335694	1336002	309	+1	hypothetical protein	3	validated/finished	no	no	0.4078	0.2718	0.52	11645.66	5.07
ABAYE1271	CDS		1336002	1337678	1677	+3	conserved hypothetical protein	4	validated/finished	no	no	0.4150	0.3274	0.51	63021.18	6.17
ABAYE1272	CDS		1337688	1340270	2583	+3	hypothetical protein	1	validated/finished	no	no	0.3864	0.2880	0.51	95073.08	5.03
ABAYE1273	CDS		1340323	1340724	402	+1	conserved hypothetical protein; putative membrane protein	4	validated/finished	no	no	0.3856	0.3731	0.54	14259.45	6.79
ABAYE1274	CDS		1340721	1341266	546	+3	conserved hypothetical protein	4	validated/finished	no	no	0.4194	0.3132	0.52	20268.32	8.84
ABAYE1275	CDS		1341376	1341588	213	+1	conserved hypothetical protein	5	validated/finished	no	no	0.3991	0.5070	0.45	7980.90	7.96
ABAYE1276	CDS		1341726	1342865	1140	+3	Type II secretion system protein L	1	automatic/finished	no	no	0.3982	0.3158	0.53	42929.29	5.90
ABAYE1277	CDS		1342865	1343344	480	+2	General secretion pathway, M protein	4	automatic/finished	no	no	0.3604	0.3000	0.57	18297.57	8.97
ABAYE1278	CDS	pyrD	1343434	1344438	1005	+1	dihydroorotate dehydrogenase, type 2	1	automatic/finished	no	no	0.3920	0.2687	0.58	36091.25	6.13
ABAYE1279	CDS		1344502	1345032	531	+1	Colicin V production family protein	1	automatic/finished	no	no	0.4087	0.3107	0.53	19055.62	9.44
ABAYE1280	CDS	purF	1345058	1346599	1542	+2	amidophosphoribosyltransferase	2	automatic/finished	no	no	0.4021	0.2899	0.65	57027.76	5.84

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ABAYE1210

CDS

rnz

1296002

1296958

957

-3

Ribonuclease Z (RNase Z) (tRNA 3 endonuclease)

validated/finished

0.3762

0.2539

0.52

35784.46

6.44

ABAYE1211

CDS

1297156

1297809

654

-1

conserved protein of unknown function

automatic/finished

0.4113

0.2844

0.66

23882.70

6.35

ABAYE1212

CDS

yaaA

1297909

1298694

786

peroxide stress resistance protein YaaA

automatic/finished

0.3562

0.2901

0.66

30035.21

5.92

ABAYE1214

CDS

thiG

1298892

1299677

786

-2

1-deoxy-D-xylulose 5-phosphate:thiol sulfurtransferase

automatic/finished

0.4135

0.2786

0.63

27761.99

4.96

ABAYE1215

CDS

thiS

1299691

1299888

198

-1

Thiamine biosynthesis protein ThiS

automatic/finished

0.4141

0.3788

0.58

7289.04

5.43

ABAYE1216

CDS

1299902

1300267

366

-3

conserved membrane protein of unknown function

automatic/finished

0.4344

0.4016

0.54

13174.41

9.52

ABAYE1217

CDS

rpoH

1300379

1301245

867

-3

RNA polymerase, sigma 32 (sigma H) factor

automatic/finished

0.4164

0.3322

0.63

32830.84

5.19

ABAYE1218

CDS

1301379

1301624

246

-2

putative enzyme

automatic/finished

0.3415

0.2439

0.61

9322.52

7.07

ABAYE1219

CDS

cspC

1301999

1302211

213

stress protein, member of the CspA family

automatic/finished

0.4413

0.2958

0.76

7880.42

6.94

ABAYE1220

CDS

rhlB

1302315

1303466

1152

ATP-dependent RNA helicase RhlB

automatic/finished

0.3837

0.2656

0.59

43586.46

7.26

ABAYE1221

CDS

1303504

1303884

381

-1

conserved exported protein of unknown function

automatic/finished

0.3543

0.2362

0.59

13281.76

9.00

ABAYE1222

CDS

1304088

1304663

576

Putative NAD(P)H nitroreductase

automatic/finished

0.4219

0.2656

0.57

21018.25

6.53

ABAYE1223

CDS

gpsA

1304698

1305771

1074

Glycerol-3-phosphate dehydrogenase [NAD(P)+]

automatic/finished

0.3994

0.2458

0.62

38534.73

5.56

ABAYE1224

CDS

1305828

1306283

456

Phosphohistidine phosphatase SixA

automatic/finished

0.3904

0.2566

0.52

16778.66

5.62

ABAYE1225

CDS

1306511

1307530

1020

putative integrase/recombinase protein

validated/finished

0.3667

0.3206

0.45

39774.71

9.68

ABAYE1226

CDS

1307527

1307817

291

-1

conserved hypothetical protein

validated/finished

0.4158

0.3505

0.45

10634.86

9.75

ABAYE1227

CDS

1307818

1308081

264

-1

hypothetical protein

validated/finished

0.3371

0.3295

0.48

9816.84

5.75

ABAYE1228

CDS

1308078

1308590

513

-2

hypothetical protein

validated/finished

0.3918

0.3567

0.53

19739.44

5.18

ABAYE1229

CDS

1308583

1308951

369

-1

hypothetical protein; putative phage related protein

validated/finished

0.3767

0.3902

0.46

14403.18

9.26

ABAYE1230

CDS

1308948

1309607

660

-2

conserved hypothetical protein

validated/finished

0.4136

0.4091

0.56

25642.40

6.17

ABAYE1231

CDS

1309604

1310542

939

-3

hypothetical protein

validated/finished

0.4175

0.2556

0.60

34397.52

5.59

ABAYE1232

CDS

1310559

1310741

183

-2

hypothetical protein

validated/finished

0.4208

0.3279

0.48

6929.76

5.19

ABAYE1233

CDS

1310728

1311072

345

-1

hypothetical protein

validated/finished

0.3971

0.3478

0.42

12689.14

9.06

ABAYE1234

CDS

1311026

1311403

378

-3

hypothetical protein; putative exported protein

validated/finished

0.3968

0.3016

0.60

13972.16

4.30

ABAYE1235

CDS

1311611

1311964

354

-3

hypothetical protein

validated/finished

0.3051

0.2373

0.37

13992.07

9.82

ABAYE1236

CDS

1311964

1312659

696

-1

conserved hypothetical protein; putative repressor

validated/finished

0.3693

0.2543

0.49

25511.96

5.38

ABAYE1237

CDS

1312755

1313015

261

hypothetical protein

validated/finished

0.3410

0.2299

0.51

9395.50

9.63

ABAYE1238

CDS

1313025

1313351

327

hypothetical protein

validated/finished

0.4190

0.4220

0.45

12332.88

6.92

ABAYE1239

CDS

1313367

1314227

861

hypothetical protein

validated/finished

0.3821

0.3310

0.55

32556.22

5.68

ABAYE1240

CDS

1314215

1314958

744

conserved hypothetical protein; putative Phage replication protein

validated/finished

0.4395

0.53

27942.85

8.18

ABAYE1241

CDS

1314928

1315143

216

hypothetical protein

validated/finished

0.4120

0.5000

0.49

8388.51

6.94

ABAYE1242

CDS

1315140

1315292

153

hypothetical protein

validated/finished

0.4183

0.3725

0.45

5694.44

9.62

ABAYE1243

CDS

1315289

1315795

507

putative Holiday-junction resolvase

validated/finished

0.4043

0.3373

0.49

19161.26

9.18

ABAYE1244

CDS

1315799

1316209

411

hypothetical protein

validated/finished

0.4501

0.4088

0.52

16015.50

6.18

ABAYE1245

CDS

1316206

1316862

657

conserved hypothetical protein; putative phage related protein

validated/finished

0.4384

0.3288

0.54

24538.36

8.71

ABAYE1246

CDS

1316817

1317239

423

hypothetical protein

validated/finished

0.4303

0.4326

0.46

15824.34

4.60

ABAYE1247

CDS

1317232

1317411

180

hypothetical protein

validated/finished

0.4000

0.3667

0.50

6731.46

9.02

ABAYE1248

CDS

1317378

1317662

285

hypothetical protein

validated/finished

0.4140

0.3158

0.47

10403.12

4.44

ABAYE1249

CDS

1317655

1317987

333

hypothetical protein

validated/finished

0.4384

0.3964

0.53

12521.68

5.02

ABAYE1251

CDS

1317991

1318440

450

conserved hypothetical protein

validated/finished

0.4178

0.4067

0.42

17672.12

4.83

ABAYE1252

CDS

1318383

1318742

360

hypothetical protein

validated/finished

0.4361

0.3667

0.48

13596.00

6.07

ABAYE1253

CDS

1318796

1319332

537

hypothetical protein

validated/finished

0.3184

0.51

21070.42

4.95

ABAYE1254

CDS

1319407

1319748

342

hypothetical protein

validated/finished

0.4591

0.2982

0.61

12226.85

4.68

ABAYE1255

CDS

1319748

1319978

231

hypothetical protein

validated/finished

0.4502

0.2468

0.58

7599.10

8.94

ABAYE1256

CDS

1319980

1321623

1644

conserved hypothetical protein; putative phage related protein

validated/finished

0.4605

0.3814

0.53

61081.00

5.33

ABAYE1257

CDS

1321620

1322105

486

hypothetical protein; putative exported protein

validated/finished

0.4362

0.4136

0.47

18540.16

5.16

ABAYE1258

CDS

1322098

1322721

624

hypothetical protein

validated/finished

0.4375

0.3462

0.61

23177.16

4.23

ABAYE1259

CDS

1322733

1323632

900

conserved hypothetical protein

validated/finished

0.4189

0.3533

0.68

32619.72

6.15

ABAYE1260

CDS

1323708

1323878

171

hypothetical protein

validated/finished

0.4035

0.3509

0.50

6450.08

4.56

ABAYE1261

CDS

1323944

1324504

561

conserved hypothetical protein; putative phage related protein

validated/finished

0.4296

0.4011

0.52

21207.10

5.09

ABAYE1262

CDS

1324489

1326582

2094

hypothetical protein; putative phage related protein

validated/finished

0.4169

0.3410

0.57

76712.41

5.25

ABAYE1263

CDS

1326572

1327036

465

conserved hypothetical protein; putative phage related acetyltransferase

validated/finished

0.3957

0.3548

0.51

17532.38

5.62

ABAYE1264

CDS

1327039

1327434

396

hypothetical protein

validated/finished

0.4545

0.3561

0.59

13475.46

9.07

ABAYE1265

CDS

1327425

1329476

2052

hypothetical protein

validated/finished

0.4094

0.3480

0.54

76253.62

8.97

ABAYE1266

CDS

1329473

1332337

2865

hypothetical protein; putative phage related protein

validated/finished

0.4283

0.3099

0.55

104012.98

4.77

ABAYE1267

CDS

1332425

1332682

258

hypothetical protein

validated/finished

0.2907

0.2442

0.57

9863.69

6.25

ABAYE1268

CDS

1332747

1335272

2526

conserved hypothetical protein; putative phage related protein

validated/finished

0.4256

0.3373

0.53

92583.76

6.73

ABAYE1269

CDS

1335269

1335628

360

hypothetical protein

validated/finished

0.3361

0.2917

0.47

13796.32

8.93

ABAYE1270

CDS

1335694

1336002

309

hypothetical protein

validated/finished

0.4078

0.2718

0.52

11645.66

5.07

ABAYE1271

CDS

1336002

1337678

1677

conserved hypothetical protein

validated/finished

0.4150

0.3274

0.51

63021.18

6.17

ABAYE1272

CDS

1337688

1340270

2583

hypothetical protein

validated/finished

0.3864

0.2880

0.51

95073.08

5.03

ABAYE1273

CDS

1340323

1340724

402

conserved hypothetical protein; putative membrane protein

validated/finished

0.3856

0.3731

0.54

14259.45

6.79

ABAYE1274

CDS

1340721

1341266

546

conserved hypothetical protein

validated/finished

0.4194

0.3132

0.52

20268.32

8.84

ABAYE1275

CDS

1341376

1341588

213

conserved hypothetical protein

validated/finished

0.3991

0.5070

0.45

7980.90

7.96

ABAYE1276

CDS

1341726

1342865

1140

Type II secretion system protein L

automatic/finished

0.3982

0.3158

0.53

42929.29

5.90

ABAYE1277

CDS

1342865

1343344

480

General secretion pathway, M protein

automatic/finished

0.3604

0.3000

0.57

18297.57

8.97

ABAYE1278

CDS

pyrD

1343434

1344438

1005

dihydroorotate dehydrogenase, type 2

automatic/finished

0.3920

0.2687

0.58

36091.25

6.13

ABAYE1279

CDS

1344502

1345032

531

Colicin V production family protein

automatic/finished

0.4087

0.3107

0.53

19055.62

9.44

ABAYE1280

CDS

purF

1345058

1346599

1542

amidophosphoribosyltransferase

automatic/finished

0.4021

0.2899

0.65

57027.76

5.84

Sequence	Id	Begin	End	Comments
	RPTR1387019	1313729	1313840	2 repeats
	RPTR1387020	1317981	1318206	1 repeats

Sequence

Begin

End

Comments

RPTR1387019

1313729

1313840

2 repeats

RPTR1387020

1317981

1318206

1 repeats

Acinetobacter baumannii AYE - chromosome ABAYE.1 Public

(sequence length : 3936291 bases)