MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ABAYE1055	CDS		1118996	1121119	2124	-3	conserved hypothetical protein	3	validated/finished	no	no	0.3752	0.3220	0.53	80880.97	5.20
ABAYE1056	CDS		1121101	1122849	1749	-1	conserved protein of unknown function	1	automatic/finished	no	no	0.3762	0.3551	0.51	67614.84	8.62
ABAYE1057	CDS	epmB	1122862	1123878	1017	-1	lysine 2,3-aminomutase	3	automatic/finished	no	no	0.3953	0.3333	0.53	38549.14	6.17
ABAYE1058	CDS	efp	1123943	1124521	579	+2	protein chain elongation factor EF-P	2	automatic/finished	no	no	0.4145	0.3316	0.75	21186.16	4.88
ABAYE1059	CDS	cstA	1124688	1126784	2097	+3	carbon starvation protein A	1	automatic/finished	no	no	0.4406	0.3591	0.57	74833.02	8.57
ABAYE1060	CDS		1126784	1127089	306	+2	conserved hypothetical protein	3	validated/finished	no	no	0.3987	0.3725	0.53	11687.32	9.72
ABAYEtRNA21	tRNA		1127257	1127333	77	+1	Val tRNA		automatic/finished	no	no
ABAYE1061	CDS		1127796	1128728	933	+3	putative HTH-type transcriptional regulator (LysR family)	3	validated/finished	no	no	0.3912	0.2733	0.54	34798.61	5.88
ABAYE1062	CDS		1128794	1130092	1299	-3	putative peptidase	1	validated/finished	no	no	0.3857	0.2564	0.60	49263.04	5.45
ABAYE1063	CDS		1130239	1131915	1677	-1	putative Choline/carnitine/betaine transporter family protein	1	validated/finished	no	no	0.3804	0.2665	0.58	61696.06	8.32
ABAYE1064	CDS		1132133	1133830	1698	-3	putative Choline/carnitine/betaine transporter family protein	1	validated/finished	no	no	0.3722	0.2774	0.47	62203.03	8.05
ABAYE1065	CDS		1134158	1135348	1191	+2	putative oxygenase; putative choline monooxygenase	1	validated/finished	no	no	0.3846	0.2771	0.69	45172.68	5.90
ABAYE1066	CDS		1135254	1136780	1527	+3	putative aldehyde dehydrogenase; putative betaine-aldehyde dehydrogenase	1	validated/finished	no	no	0.4322	0.2947	0.60	55277.04	5.63
ABAYE1067	CDS		1136809	1138164	1356	+1	putative Rubredoxin-NAD(+) reductase (RubB-like)	3	validated/finished	no	no	0.4196	0.2589	0.59	49002.78	4.86
ABAYE1068	CDS		1138182	1139498	1317	+3	putative Oxidoreductase	1	validated/finished	no	no	0.4138	0.2551	0.58	48677.58	9.03
ABAYE1069	CDS		1139512	1139865	354	+1	conserved hypothetical protein	1	validated/finished	no	no	0.4068	0.2458	0.59	12942.20	4.93
ABAYE1070	CDS		1140070	1141242	1173	+1	conserved hypothetical protein; putative signal peptide	3	validated/finished	no	no	0.3819	0.2967	0.55	43132.18	5.33
ABAYE1071	CDS		1141319	1141933	615	+2	putative membrane protein	3	validated/finished	no	no	0.3626	0.2585	0.49	22618.12	8.77
ABAYE1072	CDS		1141979	1142887	909	-3	putative Inner membrane protein; putative permease of the drug/metabolite transporter (DMT) superfamily	5	validated/finished	no	no	0.3212	0.2871	0.56	33790.89	9.25
ABAYE1073	CDS		1143046	1143975	930	-1	putative membrane protein	3	validated/finished	no	no	0.3516	0.2903	0.48	34471.21	9.33
ABAYE1074	CDS		1144002	1144208	207	-2	putative Prevent host death protein (Phd-like)	3	validated/finished	no	no	0.3768	0.2609	0.53	7733.38	8.18
ABAYE1075	CDS		1144649	1145206	558	+2	putative transcriptional regulator (LysR family)	4	validated/finished	no	no	0.2814	0.2581	0.46	22049.61	7.31
ABAYE1078	CDS		1145741	1146256	516	+2	hypothetical protein; putative signal peptide	5	validated/finished	no	no	0.2946	0.2093	0.56	19600.79	5.68
ABAYE1079	CDS		1146281	1147369	1089	-3	hypothetical protein	3	validated/finished	no	no	0.3085	0.2176	0.50	42401.82	8.09
ABAYE1080	CDS		1147963	1148694	732	+1	putative HTH-type transcriptional regulator (TerR family)	5	validated/finished	no	no	0.3620	0.3238	0.42	28294.22	9.41
ABAYE1082	CDS		1149129	1149815	687	-2	conserved hypothetical protein	1	validated/finished	no	no	0.4207	0.3188	0.59	25625.42	5.18
ABAYE1083	CDS	thadh	1150059	1151027	969	-2	L-threo-3-hydroxyaspartate ammonia-lyase	4	automatic/finished	no	no	0.4076	0.3034	0.53	34947.70	5.94
ABAYE1084	CDS		1151280	1151903	624	+3	Sensory box protein	3	automatic/finished	no	no	0.4022	0.3510	0.41	23022.41	6.16
ABAYE1085	CDS		1151900	1152760	861	-3	Putative acinetobactin utilization protein (bauF)	3	validated/finished	no	no	0.3995	0.3449	0.49	32795.94	5.58
ABAYE1086	CDS		1153158	1155005	1848	+3	putative acinetobactin biosynthesis protein (basA)	3	validated/Curated	no	no	0.3880	0.3393	0.45	68716.80	5.79
ABAYE1087	CDS		1155076	1157193	2118	-1	putative non-ribosomal peptide synthetase with condensation and peptidyl carrier protein domains (basB)	1	validated/finished	no	no	0.3848	0.2974	0.54	80454.85	5.03
ABAYE1089	CDS	bauD	1157737	1158678	942	+1	Ferric acinetobactin transport system permease protein	5	validated/finished	no	no	0.4161	0.3949	0.42	33991.73	8.93
ABAYE1090	CDS	bauC	1158678	1159625	948	+3	Ferric acinetobactin transport system permease protein	3	validated/finished	no	no	0.3945	0.3766	0.45	35160.03	9.51
ABAYE1091	CDS	bauE	1159574	1160392	819	+2	Ferric acinetobactin transport system ATP-binding protein	5	validated/finished	no	no	0.4261	0.4176	0.46	30721.06	5.62

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ABAYE1055

CDS

1118996

1121119

2124

-3

conserved hypothetical protein

validated/finished

0.3752

0.3220

0.53

80880.97

5.20

ABAYE1056

CDS

1121101

1122849

1749

-1

conserved protein of unknown function

automatic/finished

0.3762

0.3551

0.51

67614.84

8.62

ABAYE1057

CDS

epmB

1122862

1123878

1017

-1

lysine 2,3-aminomutase

automatic/finished

0.3953

0.3333

0.53

38549.14

6.17

ABAYE1058

CDS

efp

1123943

1124521

579

protein chain elongation factor EF-P

automatic/finished

0.4145

0.3316

0.75

21186.16

4.88

ABAYE1059

CDS

cstA

1124688

1126784

2097

carbon starvation protein A

automatic/finished

0.4406

0.3591

0.57

74833.02

8.57

ABAYE1060

CDS

1126784

1127089

306

conserved hypothetical protein

validated/finished

0.3987

0.3725

0.53

11687.32

9.72

ABAYEtRNA21

tRNA

1127257

1127333

Val tRNA

automatic/finished

ABAYE1061

CDS

1127796

1128728

933

putative HTH-type transcriptional regulator (LysR family)

validated/finished

0.3912

0.2733

0.54

34798.61

5.88

ABAYE1062

CDS

1128794

1130092

1299

-3

putative peptidase

validated/finished

0.3857

0.2564

0.60

49263.04

5.45

ABAYE1063

CDS

1130239

1131915

1677

-1

putative Choline/carnitine/betaine transporter family protein

validated/finished

0.3804

0.2665

0.58

61696.06

8.32

ABAYE1064

CDS

1132133

1133830

1698

-3

putative Choline/carnitine/betaine transporter family protein

validated/finished

0.3722

0.2774

0.47

62203.03

8.05

ABAYE1065

CDS

1134158

1135348

1191

putative oxygenase; putative choline monooxygenase

validated/finished

0.3846

0.2771

0.69

45172.68

5.90

ABAYE1066

CDS

1135254

1136780

1527

putative aldehyde dehydrogenase; putative betaine-aldehyde dehydrogenase

validated/finished

0.4322

0.2947

0.60

55277.04

5.63

ABAYE1067

CDS

1136809

1138164

1356

putative Rubredoxin-NAD(+) reductase (RubB-like)

validated/finished

0.4196

0.2589

0.59

49002.78

4.86

ABAYE1068

CDS

1138182

1139498

1317

putative Oxidoreductase

validated/finished

0.4138

0.2551

0.58

48677.58

9.03

ABAYE1069

CDS

1139512

1139865

354

conserved hypothetical protein

validated/finished

0.4068

0.2458

0.59

12942.20

4.93

ABAYE1070

CDS

1140070

1141242

1173

conserved hypothetical protein; putative signal peptide

validated/finished

0.3819

0.2967

0.55

43132.18

5.33

ABAYE1071

CDS

1141319

1141933

615

putative membrane protein

validated/finished

0.3626

0.2585

0.49

22618.12

8.77

ABAYE1072

CDS

1141979

1142887

909

-3

putative Inner membrane protein; putative permease of the drug/metabolite transporter (DMT) superfamily

validated/finished

0.3212

0.2871

0.56

33790.89

9.25

ABAYE1073

CDS

1143046

1143975

930

-1

putative membrane protein

validated/finished

0.3516

0.2903

0.48

34471.21

9.33

ABAYE1074

CDS

1144002

1144208

207

-2

putative Prevent host death protein (Phd-like)

validated/finished

0.3768

0.2609

0.53

7733.38

8.18

ABAYE1075

CDS

1144649

1145206

558

putative transcriptional regulator (LysR family)

validated/finished

0.2814

0.2581

0.46

22049.61

7.31

ABAYE1078

CDS

1145741

1146256

516

hypothetical protein; putative signal peptide

validated/finished

0.2946

0.2093

0.56

19600.79

5.68

ABAYE1079

CDS

1146281

1147369

1089

-3

hypothetical protein

validated/finished

0.3085

0.2176

0.50

42401.82

8.09

ABAYE1080

CDS

1147963

1148694

732

putative HTH-type transcriptional regulator (TerR family)

validated/finished

0.3620

0.3238

0.42

28294.22

9.41

ABAYE1082

CDS

1149129

1149815

687

-2

conserved hypothetical protein

validated/finished

0.4207

0.3188

0.59

25625.42

5.18

ABAYE1083

CDS

thadh

1150059

1151027

969

-2

L-threo-3-hydroxyaspartate ammonia-lyase

automatic/finished

0.4076

0.3034

0.53

34947.70

5.94

ABAYE1084

CDS

1151280

1151903

624

Sensory box protein

automatic/finished

0.4022

0.3510

0.41

23022.41

6.16

ABAYE1085

CDS

1151900

1152760

861

-3

Putative acinetobactin utilization protein (bauF)

validated/finished

0.3995

0.3449

0.49

32795.94

5.58

ABAYE1086

CDS

1153158

1155005

1848

putative acinetobactin biosynthesis protein (basA)

validated/Curated

0.3880

0.3393

0.45

68716.80

5.79

ABAYE1087

CDS

1155076

1157193

2118

-1

putative non-ribosomal peptide synthetase with condensation and peptidyl carrier protein domains (basB)

validated/finished

0.3848

0.2974

0.54

80454.85

5.03

ABAYE1089

CDS

bauD

1157737

1158678

942

Ferric acinetobactin transport system permease protein

validated/finished

0.4161

0.3949

0.42

33991.73

8.93

ABAYE1090

CDS

bauC

1158678

1159625

948

Ferric acinetobactin transport system permease protein

validated/finished

0.3945

0.3766

0.45

35160.03

9.51

ABAYE1091

CDS

bauE

1159574

1160392

819

Ferric acinetobactin transport system ATP-binding protein

validated/finished

0.4261

0.4176

0.46

30721.06

5.62

Id	Begin	End	Comments
RPTR1387011	1127310	1127425	1 repeats
RPTR1387012	1145510	1145624	1 repeats
RPTR1387013	1147529	1148676	6 repeats

Sequence

Begin

End

Comments

RPTR1387011

1127310

1127425

1 repeats

RPTR1387012

1145510

1145624

1 repeats

RPTR1387013

1147529

1148676

6 repeats

Acinetobacter baumannii AYE - chromosome ABAYE.1 Public

(sequence length : 3936291 bases)