BioProcess
Selection is empty.
1 : Amino acid biosynthesis 1.1 : Aromatic amino acid family 1.2 : Aspartate family 1.3 : Glutamate family 1.4 : Pyruvate family 1.5 : Serine family 1.6 : Histidine family 2 : Purines, pyrimidines, nucleosides, and nucleotides 2.1 : 2'-Deoxyribonucleotide metabolism 2.2 : Nucleotide and nucleoside interconversions 2.3 : Purine ribonucleotide biosynthesis 2.4 : Pyrimidine ribonucleotide biosynthesis 2.5 : Salvage of nucleosides and nucleotides 2.6 : Sugar-nucleotide biosynthesis and conversions 3 : Fatty acid and phospholipid metabolism 3.1 : Biosynthesis 3.2 : Degradation 4 : Biosynthesis of cofactors, prosthetic groups, and carriers 4.1 : Biotin 4.2 : Folic acid 4.3 : Heme, porphyrin, and cobalamin 4.4 : Lipoate 4.5 : Menaquinone and ubiquinone 4.6 : Molybdopterin 4.7 : Pantothenate and coenzyme A 4.8 : Pyridoxine 4.9 : Riboflavin, FMN, and FAD 4.10 : Glutathione and analogs 4.11 : Thiamine 4.12 : Pyridine nucleotides 4.13 : Chlorophyll and bacteriochlorphyll 4.14 : Siderophores 5 : Central intermediary metabolism 5.1 : Amino sugars 5.2 : One-carbon metabolism 5.3 : Phosphorus compounds 5.4 : Polyamine biosynthesis 5.5 : Sulfur metabolism 5.6 : Nitrogen fixation 5.7 : Nitrogen metabolism 5.8 : Electron carrier regeneration 6 : Energy metabolism 6.1 : Aerobic 6.2 : Amino acids and amines 6.3 : Anaerobic 6.4 : ATP-proton motive force interconversion 6.5 : Electron transport 6.6 : Entner-Doudoroff 6.7 : Fermentation 6.8 : Glycolysis/gluconeogenesis 6.9 : Pentose phosphate pathway 6.10 : Pyruvate dehydrogenase 6.11 : Sugars 6.12 : TCA cycle 6.13 : Methanogenesis 6.14 : Biosynthesis and degradation of polysaccharides 6.15 : Photosynthesis 6.16 : Chemoautotrophy 7 : Transport and binding proteins 7.1 : Amino acids, peptides and amines 7.2 : Anions 7.3 : Carbohydrates, organic alcohols, and acids 7.4 : Cations and iron carrying compounds 7.5 : Nucleosides, purines and pyrimidines 7.6 : Porins 7.7 : Unknown substrate 8 : DNA metabolism 8.1 : DNA replication, recombination, and repair 8.2 : Restriction/modification 8.3 : Degradation of DNA 8.4 : Chromosome-associated proteins 9 : Transcription 9.1 : Degradation of RNA 9.2 : DNA-dependent RNA polymerase 9.3 : Transcription factors 9.4 : RNA processing 10 : Protein synthesis 10.1 : tRNA aminoacylation 10.2 : Ribosomal proteins: synthesis and modification 10.3 : tRNA and rRNA base modification 10.4 : Translation factors 11 : Protein fate 11.1 : Protein and peptide secretion and trafficking 11.2 : Protein modification and repair 11.3 : Protein folding and stabilization 11.4 : Degradation of proteins, peptides, and glycopeptides 12 : Regulatory functions 12.1 : DNA interactions 12.2 : RNA interactions 12.3 : Protein interactions 12.4 : Small molecule interactions 13 : Signal transduction 13.1 : Two-component systems 13.2 : PTS 14 : Cell envelope 14.1 : Surface structures 14.2 : Biosynthesis and degradation of murein sacculus and peptidoglycan 14.3 : Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides 15 : Cellular processes 15.1 : Cell division 15.2 : Chemotaxis and motility 15.3 : Cell adhesion 15.4 : Conjugation 15.5 : Detoxification 15.6 : DNA transformation 15.7 : Sporulation and germination 15.8 : Toxin production and resistance 15.9 : Pathogenesis 15.10 : Adaptations to atypical conditions 15.11 : Biosynthesis of natural products 15.12 : Bioluminescence 16 : Biological processes 16.1 : Circulate 16.2 : Construct biomass (Anabolism) 16.3 : Control 16.4 : Excrete 16.5 : Explore 16.6 : Maintain 16.7 : Manage energy 16.8 : Protect 16.9 : Replicate 16.10 : Respire 16.11 : Scavenge (Catabolism) 16.12 : Sense 16.13 : Shape 16.14 : Store 16.15 : Symbiosis 17 : Mobile and extrachromosomal element functions 17.1 : Plasmid functions 17.2 : Prophage functions 17.3 : Transposon functions 18 : Unknown function 18.1 : Enzymes of unknown specificity 19 : Unclassified
Roles
1.7.33 : nucleotide and nucleoside conversions 4.1.B.10 : The Nucleoside-specific Channel-forming Outer Membrane Porin (Tsx) Family 8.1 : prophage genes and phage related functions 8.4 : colicin related
1 : Metabolism 1.1 : Carbon compound utilization 1.1.1 : Carbohydrates/Carbon compounds 1.1.1.1 : D-allose catabolism 1.1.1.2 : 2,5-ketogluconate metabolism 1.1.1.3 : D-arabinose catabolism 1.1.1.4 : D-galactarate catabolism 1.1.1.5 : D-galacturonate catabolism 1.1.1.6 : D-glucarate catabolism 1.1.1.7 : D-glucuronate catabolism 1.1.1.8 : L-arabinose catabolism 1.1.1.9 : L-idonate catabolism 1.1.1.10 : L-lyxose metabolism 1.1.1.11 : Fucose catabolism 1.1.1.12 : Galactitol catabolism 1.1.1.13 : Galactonate catabolism 1.1.1.14 : Lactose degradation 1.1.1.15 : Mannose catabolism 1.1.1.16 : Rhamnose catabolism 1.1.1.17 : Sorbitol degradation 1.1.1.18 : Trehalose degradation, low osmolarity+ 1.1.1.19 : Xylose catabolism 1.1.1.20 : Glycol degradation 1.1.1.21 : Mannitol degradation 1.1.1.22 : Ribose degradation 1.1.1.23 : Galactose degradation 1.1.1.24 : Sorbose degradation 1.1.1.25 : L-ascorbate degradation 1.1.2 : Fatty acids (fatty acid oxidation) 1.1.2.1 : Degradation of short-chain fatty acids 1.1.2.2 : 3-phenylpropionate and 3-(3-hydroxyphenyl)propionate degradation 1.1.2.3 : Propionate degradation 1.1.3 : Amino acids 1.1.3.1 : L-alanine degradation 1.1.3.2 : L-serine degradation 1.1.3.3 : Arginine catabolism 1.1.3.4 : Glutamate degradation 1.1.3.5 : Glycine cleavage 1.1.3.6 : Proline utilization 1.1.3.7 : Threonine catabolism 1.1.3.8 : Tryptophan utilization 1.1.3.9 : L-cysteine catabolism 1.1.3.10 : Lysine cleavage 1.1.3.11 : Histidine degradation 1.1.3.12 : Leucine degradation 1.1.3.13 : Methionine degradation 1.1.3.14 : Valine degradation 1.1.3.15 : Phenylalanine, tyrosine degradation 1.1.4 : Amines 1.1.4.1 : Phenylethylamine degradation 1.1.4.2 : Carnitine degradation 1.1.4.3 : Ornithine degradation 1.1.5 : Others 1.1.5.1 : Phenylacetic acid degradation 1.1.5.2 : Ethanol degradation 1.1.5.3 : Eugenol catabolism 1.1.5.4 : Beta-ketoadipate pathway 1.1.5.5 : Mandelate catabolism 1.2 : Macromolecule degradation 1.2.1 : RNA 1.2.2 : DNA 1.2.3 : Proteins/peptides/glycopeptides 1.2.4 : Polysaccharides 1.2.4.1 : Glycogen catabolism 1.2.4.2 : Chitin catabolism 1.3 : Energy metabolism (carbon) 1.3.1 : Glycolysis 1.3.2 : Pentose phosphate shunt, oxidative branch 1.3.3 : Pyruvate dehydrogenase 1.3.4 : Tricarboxylic acid cycle 1.3.5 : Fermentation 1.3.6 : Aerobic respiration 1.3.7 : Anaerobic respiration 1.3.8 : ATP proton motive force interconversion 1.3.9 : Entner-Doudoroff pathway 1.4 : Energy production/transport 1.4.1 : Electron donor 1.4.2 : Electron acceptor 1.4.3 : Electron carrier 1.5 : Building block biosynthesis 1.5.1 : Amino acids 1.5.1.1 : Glutamate 1.5.1.2 : Glutamine 1.5.1.3 : Arginine 1.5.1.4 : Proline 1.5.1.5 : Aspartate 1.5.1.6 : Asparagine 1.5.1.7 : Lysine, diaminopimelate 1.5.1.8 : Threonine 1.5.1.9 : Methionine 1.5.1.10 : Glycine 1.5.1.11 : Serine 1.5.1.12 : Cysteine 1.5.1.13 : Phenylalanine 1.5.1.14 : Tyrosine 1.5.1.15 : Tryptophan 1.5.1.16 : Histidine 1.5.1.17 : Alanine 1.5.1.18 : Isoleucine/valine 1.5.1.19 : Leucine 1.5.1.20 : Chorismate 1.5.1.21 : Homoserine 1.5.2 : Nucleotide 1.5.2.1 : Purine biosynthesis 1.5.2.2 : Pyrimidine biosynthesis 1.5.2.3 : Purine ribonucleotide biosynthesis 1.5.2.4 : Pyrimidine ribonucleotide/ribonucleoside biosynthesis 1.5.3 : Cofactor, small molecule carrier 1.5.3.1 : Biotin 1.5.3.2 : Folic acid 1.5.3.3 : Lipoate 1.5.3.4 : Molybdenum (molybdopterin) 1.5.3.5 : Coenzyme A 1.5.3.6 : Pyridoxine (vitamin B6) 1.5.3.7 : Nicotinamide adenine dinucleotide (NAD) 1.5.3.8 : Thiamine (Vitamin B1) 1.5.3.9 : Riboflavin (Vitamin B2), FAD, FMN 1.5.3.10 : Glutathione 1.5.3.11 : Menaquinone (MK), ubiquinone (Q) 1.5.3.12 : Heme, porphyrin 1.5.3.13 : Cobalamin (Vitamin B12) 1.5.3.14 : Enterochelin (enterobactin) 1.5.3.15 : Chrysobactin 1.5.3.16 : Achromobactin 1.5.3.19 : Isoprenoid biosynthesis 1.5.3.20 : Tetrahydrobiopterin biosynthesis 1.5.3.21 : Pyochelin biosynthesis 1.5.4 : Fatty acid and phosphatidic acid 1.6 : Macromolecules (cellular constituent) biosynthesis 1.6.1 : Phospholipid 1.6.2 : Colanic acid (M antigen) 1.6.3 : Lipopolysaccharide 1.6.3.1 : O antigen 1.6.3.2 : Core region 1.6.3.3 : Lipid A 1.6.4 : Enterobacterial common antigen (surface glycolipid) 1.6.5 : K antigen 1.6.6 : Osmoregulated periplasmic glucan 1.6.7 : Peptidoglycan (murein) 1.6.9 : Polysaccharides, cytoplasmic 1.6.10 : Lipoprotein 1.6.11 : Glycoprotein 1.6.12 : Flagella 1.6.13 : Fimbria, pili, curli 1.6.15 : Large molecule carriers 1.6.15.1 : Cytochromes 1.6.15.2 : Thioredoxin, glutaredoxin 1.6.15.3 : Biotin carboxyl carrier protein 1.6.15.4 : Acyl carrier protein 1.6.16 : Cellulose biosynthesis 1.7 : Central intermediary metabolism 1.7.1 : Unassigned reversible reactions 1.7.2 : Glyoxylate bypass 1.7.3 : Pentose phosphate shunt, non-oxidative branch 1.7.6 : Glycerol metabolism 1.7.7 : Galactose metabolism 1.7.8 : Gluconeogenesis 1.7.9 : Misc. glucose metabolism 1.7.10 : Sugar nucleotide biosynthesis, conversions 1.7.12 : Amino sugar conversions 1.7.13 : Amino acid conversion 1.7.14 : Polyamine biosynthesis 1.7.15 : 2'-deoxyribonucleotide/ribonucleoside metabolism 1.7.17 : Formyl-tetrahydrofolate biosynthesis 1.7.18 : Betaine biosynthesis 1.7.19 : Incorporation of metal ions 1.7.20 : S-adenosyl methionine biosynthesis 1.7.21 : Glyoxylate degradation 1.7.22 : Carnitine metabolism 1.7.23 : Methylglyoxal metabolism 1.7.24 : Cyanate catabolism 1.7.25 : Glycolate metabolism 1.7.26 : Allantoin assimilation 1.7.27 : Pyridoxal 5'-phosphate salvage 1.7.28 : Pyruvate catabolism 1.7.29 : Acetate catabolism 1.7.31 : Aminobutyrate catabolism 1.7.32 : Putrescine catabolism 1.7.33 : Nucleotide and nucleoside conversions 1.7.34 : Peptidoglycan (murein) turnover, recycling 1.7.35 : Lactate oxidation 1.7.36 : Trehalose biosynthesis 1.7.37 : C1 assimilation, serine pathway 1.7.38 : Methionine salvage pathway 1.8 : Metabolism of other compounds 1.8.1 : Phosphorous metabolism 1.8.2 : Sulfur metabolism 1.8.3 : Nitrogen metabolism 2 : Information transfer 2.1 : DNA related 2.1.1 : DNA replication 2.1.2 : DNA restriction/modification 2.1.3 : DNA recombination 2.1.4 : DNA repair 2.1.5 : DNA degradation 2.2 : RNA related 2.2.2 : Transcription related 2.2.3 : RNA modification 2.2.4 : RNA degradation 2.2.5 : tRNA 2.2.6 : rRNA, stable RNA 2.2.7 : Antisense RNA 2.3 : Protein related 2.3.1 : Amino acid-activation 2.3.2 : Translation 2.3.3 : Posttranslational modification 2.3.4 : Chaperoning, folding 2.3.5 : Export, signal peptide cleavage 2.3.6 : Turnover, degradation 2.3.7 : Nucleoproteins, basic proteins 2.3.8 : Ribosomal proteins 2.3.9 : Non-ribosomal peptide synthetase 3 : Regulation 3.1. : Type of regulation 3.1.1 : DNA structure level 3.1.1.1 : DNA bending, supercoiling, inversion 3.1.1.2 : Methylation 3.1.2 : Transcriptional level 3.1.2.1 : Sigma factors, anti-sigmafactors 3.1.2.2 : Activator 3.1.2.3 : Repressor 3.1.2.4 : Complex regulation 3.1.2.4.1 : More than one signal needed 3.1.2.4.2 : Regulons or multilayer component regulatory systems 3.1.2.4.3 : Two-component regulatory systems (external signal) 3.1.2.4.4 : Quorum sensing 3.1.2.5 : Action unknown 3.1.3 : Posttranscriptional 3.1.3.1 : Translation attenuation and efficiency 3.1.3.2 : Covalent modification, demodification, maturation 3.1.3.3 : Inhibition / activation of enzymes 3.1.3.4 : Proteases, cleavage of compounds 3.1.3.5 : Multilayer regulatory systems 3.1.3.6 : Antisense RNA 3.1.4 : Regulation level unknown 3.3 : Genetic unit regulated 3.3.1 : Operon (regulation of one operon) 3.3.2 : Regulon (a network of operons encoding related functions) 3.3.3 : Stimulon (ie. environmental stimulus) 3.3.4 : Global 3.4 : Trigger (some information added) 3.5 : Trigger modulation (some information added) 4 : Transport 4.1 : Channel-type Transporters 4.1.A. : alpha-type channels 4.1.A.1. : The Voltage-gated Ion Channel (VIC) Superfamily 4.1.A.8. : The Major Intrinsic Protein (MIP) Family 4.1.A.11 : The Chloride Channel (ClC) Family 4.1.B.17 : The Outer Membrane Factor (OMF) Family 4.1.A.22 : The Large Conductance Mechanosensitive Ion Channel (MscL) Family 4.1.A.23 : The Small Conductance Mechanosensitive Ion Channel (MscS) Family 4.1.A.46 : The H+- or Na+-translocating Bacterial Flagellar Motor (Mot) Family 4.1.B : Beta barrel porins (The Outer Membrane Porin (OMP) Functional Superfamily) 4.1.B.1 : The General Bacterial Porin (GBP) Family 4.1.B.3 : The Sugar Porin (SP) Family 4.1.B.9 : The FadL Outer Membrane Protein (FadL) Family 4.1.B.10 : The Nucleoside-specific Channel-forming Outer Membrane Porin (Tsx) Family 4.1.B.14 : The Outer Membrane Receptor (OMR) Family 4.1.B.21 : The OmpG Porin (OmpG) Family 4.2 : Electrochemical potential driven transporters 4.2.A. : Porters (Uni-, Sym- and Antiporters) 4.2.A.1 : The Major Facilitator Superfamily (MFS) 4.2.A.2 : The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family 4.2.A.3 : The Amino Acid-Polyamine-Choline (APC) Family 4.2.A.4 : The Cation Diffusion Facilitator (CDF) Family 4.2.A.6 : The Resistance-Nodulation-Cell Division (RND) Superfamily 4.2.A.7 : The Drug/Metabolite Transporter (DMT) Superfamily 4.2.A.8 : The Gluconate:H+ Symporter (GntP) Family 4.2.A.9 : The Cytochrome oxidase biogenesis (Oxa1) Family 4.2.A.10 : The 2-Keto-3-Deoxygluconate Transporter (KDGT) Family 4.2.A.13 : The C4-Dicarboxylate Uptake (Dcu) Family 4.2.A.14 : The Lactate Permease (LctP) Family 4.2.A.15 : The Betaine/Carnitine/Choline Transporter (BCCT) Family 4.2.A.16 : The Telurite-resistance/Dicarboxylate Transporter (TDT) Family 4.2.A.17 : The Proton-dependent Oligopeptide Transporter (POT) Family 4.2.A.19 : The Ca2+:Cation Antiporter (CaCA) Family 4.2.A.20 : The Inorganic Phosphate Transporter (PiT) Family 4.2.A.21 : The Solute:Sodium Symporter (SSS) Family 4.2.A.23 : The Dicarboxylate/Amino Acid:Cation (Na+ or H+) Symporter (DAACS) Family 4.2.A.25 : The Alanine/Glycine:Cation symporter (AGCS) Family 4.2.A.26 : The Branched Chain Amino Acid:Cation Symporter (LIVCS) Family 4.2.A.27 : The Glutamate:Na+ Symporter (GltS) Family 4.2.A.33 : The NhaA Na+:H+ Antiporter (NhaA) Family 4.2.A.34 : The NhaB Na+:H+ Antiporter (NhaB) Family 4.2.A.36 : The Monovalent Cation:Proton Antiporter-1 (CPA1) Family 4.2.A.37 : The Monovalent Cation:Proton Antiporter-2 (CPA2) Family 4.2.A.38 : The K+ Transporter (Trk) Family 4.2.A.39 : The Nucleobase:Cation Symporter-1 (NCS1) Family 4.2.A.40 : The Nucleobase:Cation Symporter-2 (NCS2) Family 4.2.A.41 : The Concentrative Nucleoside Transporter (CNT) Family 4.2.A.42 : The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family 4.2.A.44 : The Formate-Nitrite Transporter (FNT) Family 4.2.A.45 : The Metal Ion Transporter (MIT) Family 4.2.A.47 : The Divalent Anion:Na+ Symporter (DASS) Family 4.2.A.49 : The Ammonium Transporter (Amt) Family 4.2.A.53 : The Sulfate Permease (SulP) Family 4.2.A.55 : The Manganese (Nramp) Fam. 4.2.A.58 : The Phosphate:Na+ Symporter (PNaS) Family 4.2.A.61 : The C4-dicarboxylate Uptake C (DcuC) Family 4.2.A.64 : The Type V Secretory Pathway or Twin Arginine Targeting (Tat) Family 4.2.A.66 : The Multi Antimicrobial Extrusion (MATE) Family 4.2.A.68 : The p-Aminobenzoyl-glutamate Transporter (AbgT) Family 4.2.A.69 : The Auxin Efflux Carrier (AEC) Family 4.2.A.72 : The K+ uptake permease (KUP) family 4.2.A.75 : The L-lysine exporter (LysE) family 4.2.A.76 : The Resistance to Homoserine/Threonine (RhtB) Family 4.2.C : Ion-gradient driven energizers 4.2.C.1 : TonB Family of Auxiliary Proteins for Energization of OMR-mediated Transport 4.3 : Primary Active Transporters 4.3.A. : Pyrophosphate Bond (ATP; GTP; P2) Hydrolysis-driven Active Transporters 4.3.A.1 : The ATP-binding Cassette (ABC) Superfamily + ABC-type Uptake Permeases 4.3.A.1.a : ATP binding component 4.3.A.1.m : membrane component 4.3.A.1.p : periplasmic binding component 4.3.A.1.am : ATP binding and membrane component 4.3.A.2 : The H+/Na+-translocating F-, V- and A-type ATPase (F-ATPase) Superfamily 4.3.A.3 : The P-type ATPase (P-ATPase) Superfamily 4.3.A.4 : The Arsenite-Antimonite (Ars) Efflux Family 4.3.A.5 : The Type II (General) Secretory Pathway (IISP) Family 4.3.A.6 : The Type III (Virulence-related) Secretory Pathway (IIISP) Family 4.3.A.7 : The Type IV (Conjugal DNA-Protein Transfer) Secretory Pathway (IVSP) Family 4.3.D. : Oxidoreduction-driven Active Transporters 4.3.D.1 : The Proton- or sodium ion-translocating NADH Dehydrogenase (NDH) Family 4.3.D.4 : The Proton-translocating Cytochrome Oxidase (COX) Superfamily 4.4 : Group Translocators 4.4.A : Phosphotransferase Systems (PEP-dependent PTS) 4.4.A.1 : The PTS Glucose-Glucoside (Glc) Family 4.4.A.2 : The PTS Fructose-Mannitol (Fru) Family 4.4.A.3 : The PTS Lactose-N,N'-Diacetylchitobiose-betaucoside (Lac) Family 4.4.A.4 : The PTS Glucitol (Gut) Family 4.4.A.5 : The PTS Galactitol (Gat) Family 4.4.A.6 : The PTS Mannose-Fructose-Sorbose (Man) Family 4.8.A : Accessory Factors Involved in Transport 4.8.A.1 : The Membrane Fusion Protein (MFP) Family 4.8.A.2 : The Secretin Auxiliary Lipoprotein (SAL) Family 4.8.A.3 : MPA1 Family auxillary transport protein 4.8.A.7 : The Phosphotransferase System Enzyme I (EI) Family 4.8.A.8 : The Phosphotransferase System HPr (HPr) Family 4.9.A : Transporters of Unknown Classification 4.9.A.1 : The Polysaccharide Transporter (PST) Family 4.9.A.4 : The Nicotinamide Mononucleotide (NMN) Uptake Permease (PnuC) Family 4.9.A.8 : The Ferrous Iron Uptake (FeoB) Family 4.9.A.13 : The Short Chain Fatty Acid Transporter (scFAT) Family 4.9.A.16 : The Septal DNA Translocator (SDT) Family 4.9.A.17 : The Metal Ion Transporter (MIT) Family 4.9.B : Putative uncharacterized transport protein 4.9.B.3 : The Putative Bacterial Murein Precursor Exporter (MPE) Family 4.9.B.4 : The Putative Efflux Transporter (PET) Family 4.9.B.6 : The Toxic Hok/Gef Protein (Hok/Gef) Family 4.9.B.10 : The 6TMS Putative MarC Transporter (MarC) Family 4.9.B.18 : The SecDF-associated Single Transmembrane Protein (SSTP) Family 4.9.B.21 : The Frataxin (Frataxin) Family 4.9.B.22 : The Putative Permease (PerM) Family 4.9.B.24 : The Testis-Enhanced Gene Transfer (TEGT) Family 4.9.B.25 : The YbbM (YbbM) Family 4.9.B.27 : The YdjX-Z (YdjX-Z) Family 4.9.B.28 : The YqaE (YqaE) Family 4.9.B.29 : The YebN (YebN) Family 4.9.B.31 : The YqiH (YqiH) Family 4.9.B.32 : The Putative Vectorial Glycosyl Polymerization (VGP) Family 4.S : substrate 4.S.1 : (D)-glucarate/galactarate 4.S.10 : allose/ribose 4.S.100 : L-arabinose 4.S.101 : L-arabinose /H+ 4.S.102 : L-arabinose/ isopropyl-beta-D-thiogalactopyranoside 4.S.103 : L-asparagine 4.S.104 : lipooligosaccharides 4.S.105 : lipopolysaccharide 4.S.106 : lipoprotein 4.S.107 : L-lactate 4.S.108 : L-leucine/L-valine/L-iso-leucine 4.S.109 : L-rhamnose/H+ 4.S.11 : alpha-ketoglutarate 4.S.110 : L-threonine/L-serine 4.S.111 : lysine 4.S.112 : lysine/arginine/ornithine 4.S.113 : maltose 4.S.114 : maltose/maltodextrin 4.S.115 : mannitol 4.S.116 : mannose 4.S.117 : mellobiose 4.S.118 : methionine 4.S.119 : methylgalactoside/galactose 4.S.12 : amino acid 4.S.120 : Mg++ 4.S.121 : Mg2+/Ni2+/Co2+ 4.S.122 : microcin B17 4.S.123 : Mn+/H+ 4.S.124 : molybdate 4.S.125 : molybdenum 4.S.126 : multidrug 4.S.127 : multidrug/bicyclomycin 4.S.128 : muropeptide 4.S.129 : myo-inositor 4.S.13 : amino acid/amide 4.S.130 : Na+ 4.S.131 : Na+/ alanine/glycine 4.S.132 : Na+/ H+ 4.S.133 : Na+/Ca+ 4.S.134 : Na+/dicarboxylate 4.S.135 : Na+/glutamate/aspartate 4.S.136 : Na+/H+ 4.S.137 : Na+/leucine/valine/iso-leucine 4.S.138 : Na+/pantothenate 4.S.139 : Na+/proline 4.S.14 : ammonium 4.S.140 : Na+/serine/threonine 4.S.141 : N-acetylgalactosamine 4.S.142 : N-acetylglucosamine 4.S.143 : Ni++ 4.S.144 : nicotinamide mononucleotide 4.S.145 : nitrite 4.S.146 : nucleoside 4.S.147 : nucleoside/H+ 4.S.148 : oligopeptide 4.S.149 : oligopeptides 4.S.15 : antibiotic 4.S.150 : p-aminobenzoyl-glutamate 4.S.151 : Pb/Cd/Zn/Hg 4.S.152 : peptide 4.S.153 : phenylalanine 4.S.154 : phenylalanine/ tyrosine 4.S.155 : phosphate 4.S.156 : polymyxin 4.S.157 : potassium 4.S.158 : proline 4.S.159 : proline/betaine 4.S.16 : arabinose polymer 4.S.160 : protein 4.S.161 : protein/DNA 4.S.162 : purine/xanthine 4.S.163 : putrescine 4.S.164 : putrescine/ornithine 4.S.165 : putrescine/ornitine 4.S.166 : putrescine/spermidine 4.S.167 : serine 4.S.168 : shikimate/dehydroshikimate 4.S.169 : sialic acid 4.S.17 : arginine 4.S.170 : S-methylmethionine 4.S.171 : spermidine/putrescine 4.S.172 : sucrose 4.S.173 : sugar 4.S.174 : sulfate 4.S.175 : taurine 4.S.176 : tellurite 4.S.177 : thiamine 4.S.178 : thiosulfate 4.S.179 : thiosulfate/sulfate 4.S.18 : arginine/ornitine 4.S.180 : threonine 4.S.181 : trehalose 4.S.182 : tripeptide 4.S.183 : tryptophan 4.S.184 : tyrosine 4.S.185 : uracil 4.S.186 : urasil 4.S.187 : vitamin B12 4.S.188 : water 4.S.189 : xanthosine 4.S.19 : arsenite 4.S.190 : xylose/H+ 4.S.191 : Zn 4.S.192 : chrysobactin 4.S.193 : achromobactin 4.S.2 : 2-keto-3-deoxy-D-gluconate 4.S.20 : benzoate 4.S.21 : beta-galactosidase/lactose and glucose 4.S.22 : beta-glucoside 4.S.23 : betaine/choline/glycine 4.S.24 : betaine/choline/glycine transport protein 4.S.25 : Ca+/ H+ 4.S.26 : cadaverine/lysine 4.S.27 : carnitine 4.S.28 : cation 4.S.29 : cellobiose/arbutin/salicin 4.S.3 : 3-hydroxyphenylpropionic acid 4.S.30 : cellobiose/salicin/arbutin 4.S.31 : chloramphenicol 4.S.32 : chloride 4.S.33 : choline 4.S.34 : citrate/succinate 4.S.35 : colicin4 4.S.36 : Cu 4.S.37 : curli subunit 4.S.38 : cyanate 4.S.39 : cysteine 4.S.4 : 3-phenylpropionic acid 4.S.40 : cysteine/O-acetyl-L-serine/cysteine metabolites 4.S.41 : cytosine 4.S.42 : D-alanine/D-serine/glycine 4.S.43 : D-galactonate 4.S.44 : D-glucarate 4.S.45 : D-glucose/trehalose 4.S.46 : dicarboxylate 4.S.47 : dipeptide 4.S.48 : D-ribose 4.S.49 : drug 4.S.5 : alkanesulfonate 4.S.50 : D-xylose 4.S.51 : enterochelin 4.S.52 : fatty acid 4.S.53 : Fe 4.S.54 : Fe++ 4.S.55 : ferric dicitrate 4.S.56 : ferric enterobactin 4.S.57 : ferric hydroxamate 4.S.58 : ferrichrome 4.S.59 : formate 4.S.6 : alkanesulphonate 4.S.60 : formate/oxalate 4.S.61 : fosfidomycin/H+ 4.S.62 : frucose 4.S.63 : fructose 4.S.64 : fucose 4.S.65 : galactitol 4.S.66 : galactose/H+ 4.S.67 : gamma-aminobutyrate 4.S.68 : glucitol/sorbitol 4.S.69 : gluconate 4.S.7 : alklphosphonate 4.S.70 : gluconate/L-idonate 4.S.71 : glucose 4.S.72 : glucose/maltose 4.S.73 : glucuronide 4.S.74 : glutamate/aminobutyric acid 4.S.75 : glutamate/aspartate 4.S.76 : glutamine 4.S.77 : glycerol 4.S.78 : glycerol-3-P 4.S.79 : glycine betaine choline transport 4.S.8 : alkylphosphonate 4.S.80 : glycine/betaine/proline 4.S.81 : group A colicins 4.S.82 : H+ 4.S.83 : H+/acridine 4.S.84 : H+/lactose/glucose 4.S.85 : heme 4.S.86 : hexose phosphate 4.S.87 : hexuronate 4.S.88 : histidine 4.S.89 : histidine/lysine/arginine/ornithine 4.S.9 : allantoin/ion 4.S.90 : homoserine/lactone 4.S.91 : hydrophilic molecule 4.S.92 : hydrophilic molecules 4.S.93 : ion 4.S.94 : ions 4.S.95 : iron dicitrate 4.S.96 : K+ 4.S.97 : K+/H+ 4.S.98 : lactate 4.S.99 : lactose 5 : Cell processes 5.1 : Cell division 5.2 : Cell cycle physiology 5.3 : Motility (incl. chemotaxis, energytaxis, aerotaxis, redoxtaxis) 5.4 : Genetic exchange, recombination 5.5 : Adaptation to stress 5.5.1 : Osmotic pressure 5.5.2 : Temperature extremes 5.5.3 : Starvation response 5.5.4 : pH response 5.5.5 : Dessication 5.5.6 : Other stresses (mechanical, nutritional, oxidative) 5.5.7 : Fe aquisition 5.6 : Protection 5.6.1 : Radiation 5.6.2 : Detoxification (xenobiotic metabolism) 5.6.3 : Cell killing 5.6.4 : Drug resistance/sensitivity 5.8 : SOS response 5.10 : Defense/survival 5.11 : DNA uptake 5.12 : Biofilm production 5.13 : Virulence associated 6 : Cell structure 6.1 : Membrane 6.2 : Peptidoglycan (murein) 6.3 : Surface antigens (ECA, O antigen of LPS) 6.4 : Flagellum 6.5 : Pilus 6.6 : Ribosome 6.7 : Capsule (M and K antigens) 7 : Location of gene products 7.1 : Cytoplasm 7.2 : Periplasmic space 7.3 : Inner membrane 7.4 : Outer membrane 7.5 : Extracellular 8 : extrachromosomal 8.1 : Prophage genes and phage related functions 8.1.1 : DNA packaging, phage assembly 8.1.2 : Replication 8.1.3 : Regulation 8.1.4 : Integration, recombination 8.1.5 : Lysis 8.1.6 : Structural component 8.2 : Plasmid related 8.2.1 : replication and maintenance 8.2.2 : plasmid transfer 8.3 : Transposon related 8.3.1 : transposases 8.3.2 : regulation of mobility 8.4 : Colicin related 9 : DNA sites 10 : cryptic genes
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