Genomic Tools

OG ID	OG function	Label	Gene	Product	COG	PFAM short name	KO
3NNUZ	Fimbrial protein	ACIAD0119		putative major fimbrial subunit protein precursor	COG3539		K07345
3NN8Q	Pili assembly chaperone PapD, C-terminal domain	ACIAD0120		putative pili assembly chaperone, required for type 1 fimbriae	COG3121	PapD_C, PapD_N	K07346
3NM2C	usher protein	ACIAD0121		putative outer membrane usher protein (probable fimbrial usher protein)	COG3188	PapC_C, PapC_N, Usher	K07347
3NMY6	Fimbrial protein	ACIAD0122		putative fimbrial subunit, outer membrane protein		Fimbrial
3NJK6	Bacterial type II and III secretion system protein	ACIAD0294		putative general secretion pathway protein	COG1450	Secretin, Secretin_N	K02453
3NJ15	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue	ACIAD0360	pilD	type 4 prepilin-like proteins leader peptide processing enzyme (Protein secretion protein XCPA)[Includes: Leader peptidase (Prepilin peptidase); N-methyltransferase ]	COG1989	DiS_P_DiS, Peptidase_A24	K02654
3NIQS	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB	ACIAD0362	pilB	type 4 fimbrial biogenesis protein	COG2804	T2SSE, T2SSE_N	K02652
3NPU7	Fimbrial protein	ACIAD0387	acuA	fimbrial protein AcuA
3NM2C	usher protein	ACIAD0389	acuC	fimbrial usher AcuC	COG3188	PapC_N, Usher	K07347
3NT5Q	Tetratricopeptide repeat	ACIAD0558	pilF	type 4 fimbrial biogenesis protein	COG3063	TPR_16	K02656
3NMDE	Type II transport protein GspH	ACIAD0695		putative type 4 fimbrial biogenesis protein FimT	COG2165	GspH, N_methyl	K08084
3NT3W	Two component signalling adaptor domain	ACIAD0788	pilI	twitching motility protein	COG0835	CheW	K02659
3NIKD	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).	ACIAD0789	pilJ	type IV pilus biogenesis protein	COG0840		K02660
3NKGE	Type II/IV secretion system protein	ACIAD0911	pilU	twitching motility protein	COG2805	T2SSE	K02670
3NJ7T	twitching motility protein	ACIAD0912	pilT	twitching motility protein	COG2805	T2SSE	K02669
3NJR5	Type II secretion system (T2SS), protein E, N-terminal domain	ACIAD2241		putative secretion pathway ATPase	COG2804	T2SSE, T2SSE_N	K02454
3NNHX	Type II secretion system (T2SS), protein I	ACIAD2356	xcpV	general secretion pathway protein I precursor (PilD-dependent protein pddC)	COG2165	N_methyl, T2SSI	K02458
3NNKH	PilZ domain	ACIAD2360	pilZ	type 4 fimbrial biogenesis protein	COG3215	PilZ	K02676
3NTK1	Domain of unknown function (DUF4845)	ACIAD2582		conserved hypothetical protein; putative signal peptide		DUF4845
3NTMV	TIGRFAM Outer membrane protein	ACIAD2866	bap	biofilm associated protein
3NJFB	COG0457 FOG TPR repeat	ACIAD2901		conserved hypothetical protein; putative signal peptide		TPR_19
3NIQS	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB	ACIAD3024	xcpR	general secretion pathway protein E (Type II traffic warden ATPase)	COG2804	T2SSE	K02454
3NNR0	Type IV minor pilin ComP, DNA uptake sequence receptor	ACIAD3314	comF	type IV pilus assembly protein ComF	COG2165	ComP_DUS, N_methyl	K02655
3NP0M	Prokaryotic N-terminal methylation motif	ACIAD3315	comE	type IV pilus assembly protein ComE	COG2165	ComP_DUS, N_methyl	K02655
3NKHS	Tfp pilus assembly protein tip-associated adhesin PilY1	ACIAD3316	comC	competence factor involved in DNA binding and uptake	COG3419	Neisseria_PilC	K02674
3NMPE	Type IV Pilus-assembly protein W	ACIAD3318	comB	pilin like competence factor		N_methyl, PilW	K02672
3NTIK	type IV pilus modification protein PilV	ACIAD3319		putative type 4 fimbrial biogenesis protein (PilV)	COG2165	N_methyl	K02671
3NNBB	Prokaryotic N-terminal methylation motif	ACIAD3321	FimU	type IV pilus assembly protein FimU	COG2165	GspH, N_methyl	K08085
3NKPQ	Outer membrane usher protein	ACIAD3334		putative usher protein involved in fimbrial biogenesis (PapC/CsuD)	COG3188	Usher	K07347
3NPSI	pilus assembly protein major pilin PilA	ACIAD3338	comP	competence factor involved in DNA binding and uptake	COG2165	N_methyl, Pilin	K02650
3NJEN	Pilus assembly protein, PilP	ACIAD3356	pilP	type IV pilus assembly protein PilP	COG3168	PilP	K02665
3NJ8W	Pilus assembly protein, PilO	ACIAD3357		putative membrane protein (ComO)	COG3167	PilO	K02664
3NIH9	Fimbrial assembly protein (PilN)	ACIAD3359		putative membrane protein (ComN)	COG3166	PilN	K02663
3NKVX	Type IV pilus assembly protein PilM;	ACIAD3360		putative membrane protein (ComM)	COG0849	PilM_2	K02662

3NNUZ

Fimbrial protein

ACIAD0119

putative major fimbrial subunit protein precursor

COG3539

K07345

3NN8Q

Pili assembly chaperone PapD, C-terminal domain

ACIAD0120

putative pili assembly chaperone, required for type 1 fimbriae

PapD_C, PapD_N

usher protein

putative outer membrane usher protein (probable fimbrial usher protein)

COG3188

PapC_C, PapC_N, Usher

K07347

3NMY6

Fimbrial protein

ACIAD0122

putative fimbrial subunit, outer membrane protein

Fimbrial

3NJK6

Bacterial type II and III secretion system protein

ACIAD0294

putative general secretion pathway protein

COG1450

Secretin, Secretin_N

K02453

3NJ15

Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue

ACIAD0360

pilD

type 4 prepilin-like proteins leader peptide processing enzyme (Protein secretion protein XCPA)[Includes: Leader peptidase (Prepilin peptidase); N-methyltransferase ]

CDSs classified by EGGNOG in COG category N