| 3NIZ8 |
YcdC-like protein, C-terminal region |
ACIAD0026 |
rutR |
DNA-binding transcriptional regulator of the alternative pyrimidine degradation pathway (Rut operon repressor) |
COG1309 |
TetR_C_3, TetR_N |
K09017 |
| 3NJ4A |
Bacterial regulatory proteins, tetR family |
ACIAD0046 |
|
putative transcriptional regulator |
|
TetR_N |
|
| 3NKKM |
Bacterial regulatory proteins, tetR family |
ACIAD0047 |
|
conserved hypothetical protein; putative transcriptional regulator (TetR family) |
|
TetR_N |
|
| 3NJAI |
LysR substrate binding domain |
ACIAD0105 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NTA3 |
FCD |
ACIAD0107 |
lldR |
transcriptional repressor for L-lactate utilization (GntR family) |
COG2186 |
FCD, GntR |
K14348 |
| 3NKY4 |
Lrp/AsnC ligand binding domain |
ACIAD0114 |
dadR |
transcriptional regulator for dadAX gene cluster (AsnC family) |
COG1522 |
AsnC_trans_reg, HTH_24 |
K03719 |
| 3NKAH |
Arabinose-binding domain of AraC transcription regulator, N-term |
ACIAD0124 |
|
putative transcriptional regulator |
|
Arabinose_bd, HTH_18 |
|
| 3NMCP |
FCD |
ACIAD0132 |
|
putative transcriptional regulator (GntR family) |
COG2188 |
FCD, GntR |
K03710 |
| 3NPPB |
helix_turn _helix lactose operon repressor |
ACIAD0135 |
|
putative transcriptional repressor (GalR/LacI family) |
|
LacI, Peripla_BP_3 |
|
| 3NK1B |
Transcriptional regulator PadR-like family |
ACIAD0154 |
|
putative transcriptional regulator |
|
PadR |
|
| 3NJ59 |
helix_turn_helix, arabinose operon control protein |
ACIAD0160 |
|
putative transcriptional regulator (AraC family) |
COG2207 |
HTH_18 |
K07506 |
| 3NTAS |
helix_turn_helix, arabinose operon control protein |
ACIAD0194 |
|
putative transcriptional regulator (AraC family) |
|
HTH_18 |
|
| 3NTAT |
Bacterial regulatory proteins, tetR family |
ACIAD0196 |
|
putative regulator (TetR/AcrR family) |
|
TetR_N |
|
| 3NT7R |
LysR substrate binding domain |
ACIAD0202 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NM2Y |
Bacterial regulatory proteins, tetR family |
ACIAD0217 |
|
putative HTH-type transcription regulator protein (TetR family) |
|
TetR_N |
|
| 3NNHG |
Belongs to the P(II) protein family |
ACIAD0244 |
glnK |
regulatory protein, P-II 2, for nitrogen assimilation by glutamine synthetase, regulates GlnL (NRII) and GlnE (ATase) |
|
P-II |
|
| 3NJDY |
Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes |
ACIAD0246 |
nrdR |
Transcriptional repressor nrdR |
COG1327 |
ATP-cone |
K07738 |
| 3NJJT |
response regulator |
ACIAD0260 |
gacA |
response regulator (Global antibiotic and cyanide control protein, LuxR/UhpA family) |
|
GerE, Response_reg |
|
| 3NIWF |
LytTr DNA-binding domain |
ACIAD0285 |
algR |
alginate biosynthesis regulatory protein |
COG3279 |
LytTR, Response_reg |
K08083 |
| 3NIXF |
Participates in transcription elongation, termination and antitermination |
ACIAD0301 |
nusG |
transcription antitermination protein |
COG0250 |
NusG |
K02601 |
| 3NJ1H |
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates |
ACIAD0307 |
rpoB |
DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit) |
COG0085 |
RNA_pol_Rpb2_1, RNA_pol_Rpb2_2, RNA_pol_Rpb2_3, RNA_pol_Rpb2_45, RNA_pol_Rpb2_6, RNA_pol_Rpb2_7 |
K03043 |
| 3NIMH |
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates |
ACIAD0308 |
rpoC |
DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit) |
COG0086 |
RNA_pol_Rpb1_1, RNA_pol_Rpb1_2, RNA_pol_Rpb1_3, RNA_pol_Rpb1_4, RNA_pol_Rpb1_5 |
K03046 |
| 3NM9S |
LysR substrate binding domain |
ACIAD0323 |
|
putative transcriptional regulator (LysR family) |
COG0583 |
HTH_1, LysR_substrate |
K21645 |
| 3NJBU |
6-O-methylguanine DNA methyltransferase, DNA binding domain |
ACIAD0344 |
ada |
bifunctional protein [Includes: transcriptional regulator of DNA repair (AraC/Xyl family); O6-methylguanine-DNA methyltransferase] |
COG2169, COG0350 |
DNA_binding_1, HTH_18 |
K10778 |
| 3NIRW |
Bacterial transcriptional regulator |
ACIAD0347 |
|
putative transcriptional regulator |
|
IclR |
|
| 3NJ6B |
Belongs to the UPF0301 (AlgH) family |
ACIAD0353 |
|
protein of unknown function UPF0301 |
COG1678 |
DUF179 |
K07735 |
| 3NJKS |
Participates in both transcription termination and antitermination |
ACIAD0368 |
nusA |
transcription termination/antitermination, L factor (N utilization substance protein A) |
COG0195 |
HHH_5, KH_5, NusA_N |
K02600 |
| 3NPD2 |
MerR HTH family regulatory protein |
ACIAD0405 |
|
conserved hypothetical protein |
|
MerR_2 |
K18997 |
| 3NK52 |
LysR substrate binding domain |
ACIAD0434 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NMAS |
WYL domain |
ACIAD0444 |
|
putative transcriptional regulator |
|
HTH_11, WYL |
|
| 3NKV9 |
LysR substrate binding domain |
ACIAD0448 |
|
putative transcriptional regulator (LysR family) |
COG0583 |
HTH_1, LysR_substrate |
K05817 |
| 3NJKP |
LysR substrate binding domain |
ACIAD0457 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NJPX |
Transcriptional regulator |
ACIAD0461 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NJRU |
Arabinose-binding domain of AraC transcription regulator, N-term |
ACIAD0473 |
|
putative transcriptional regulator (AraC family) |
|
Arabinose_bd, HTH_18 |
|
| 3NIMF |
Bacterial transcriptional repressor |
ACIAD0504 |
|
putative transcriptional regulator (TetR-family) |
|
TetR, TetR_N |
|
| 3NJHR |
Putative FMN-binding domain |
ACIAD0622 |
|
conserved hypothetical protein; putative transcriptional regulator |
COG2808 |
FMN_bind_2 |
K07734 |
| 3NIJD |
Transcriptional regulatory protein, C terminal |
ACIAD0627 |
baeR |
transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis |
COG0745 |
Response_reg, Trans_reg_C |
K07664 |
| 3NKR2 |
Arabinose-binding domain of AraC transcription regulator, N-term |
ACIAD0641 |
|
putative transcriptional regulator |
|
Arabinose_bd, HTH_18 |
|
| 3NKPX |
Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released |
ACIAD0657 |
rpoN |
RNA polymerase sigma-54 factor |
COG1508 |
Sigma54_AID, Sigma54_CBD, Sigma54_DBD |
K03092 |
| 3NNZ6 |
Belongs to the BolA IbaG family |
ACIAD0659 |
|
putative toluene tolerance protein Ttg2F |
|
BolA |
|
| 3NIJK |
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
ACIAD0726 |
bfmR |
response regulator in two-component regulatory system (bfmR/bfmS) |
|
Response_reg, Trans_reg_C |
|
| 3NJYX |
LysR substrate binding domain |
ACIAD0746 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NJPN |
Bacterial regulatory proteins, tetR family |
ACIAD0757 |
|
putative transcriptional regulator (TetR-family ) |
|
TetR_N |
|
| 3NN44 |
Response regulator receiver domain |
ACIAD0786 |
pilG |
twitching motility protein |
COG0784 |
Response_reg |
K02657 |
| 3NN3I |
Response regulator receiver domain |
ACIAD0787 |
pilH |
twitching motility protein |
COG0784 |
Response_reg |
K02658 |
| 3NIVN |
LysR substrate binding domain |
ACIAD0813 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NJQF |
FCD domain |
ACIAD0844 |
|
putative transcriptional regulator (GntR-family) |
|
FCD, GntR |
|
| 3NN6W |
This enzyme acetylates the N-terminal alanine of ribosomal protein S18 |
ACIAD0887 |
rimI |
ribosomal-protein-alanine acetyltransferase (Acetylating enzyme for N-terminal of ribosomal protein S18) |
COG0456 |
Acetyltransf_10 |
K03789 |
| 3NKJ7 |
Belongs to the Fur family |
ACIAD0910 |
fur |
negative regulator of ferric iron uptake |
COG0735 |
FUR |
K03711 |
| 3NKY6 |
Sigma-70, region 4 |
ACIAD0935 |
|
putative RNA polymerase sigma factor |
COG1595 |
Sigma70_r2, Sigma70_r4_2 |
K03088 |
| 3NIIV |
LysR substrate binding domain |
ACIAD0967 |
iciA |
inhibitor of replication initiation (transcriptional regulator of dnaA and argK (affects arginine transport) (LysR family)) |
COG0583 |
HTH_1, LysR_substrate |
K05596 |
| 3NINZ |
FCD |
ACIAD0968 |
|
putative transcriptional regulator (GntR-family) |
|
FCD, GntR |
|
| 3NN54 |
Acetyltransferase (GNAT) domain |
ACIAD0974 |
|
putative acetyltransferase |
|
Acetyltransf_1 |
|
| 3NIFR |
FCD |
ACIAD0978 |
vanR |
transcriptional regulator for ferulate or vanillate catabolism (GntR family) |
COG1802 |
FCD, GntR |
K11475 |
| 3NJWG |
helix_turn_helix isocitrate lyase regulation |
ACIAD0985 |
|
putative transcriptional regulator (PcaU-like) |
|
HTH_IclR, IclR |
|
| 3NNTM |
Acetyltransferase (GNAT) domain |
ACIAD1002 |
|
putative acetyltransferase (GNAT family) |
|
Acetyltransf_1 |
|
| 3NK3E |
Repressor involved in choline regulation of the bet genes |
ACIAD1010 |
betI |
repressor of bet genes |
COG1309 |
TetR_C_6, TetR_N |
K02167 |
| 3NKVB |
Transcriptional regulator |
ACIAD1014 |
|
putative transcriptional regulator; putative regulator of acetoin metabolisme |
|
|
|
| 3NJBE |
helix_turn_helix, arabinose operon control protein |
ACIAD1041 |
|
putative transcriptional regulator (AraC family) |
|
HTH_18 |
|
| 3NP0Z |
Cold shock protein domain |
ACIAD1044 |
|
putative cold shock protein |
|
CSD |
|
| 3NIGA |
Transcriptional regulator |
ACIAD1063 |
estR |
esterase operon transcriptional regulator (LysR family) |
COG0583 |
HTH_1, LysR_substrate |
K04761 |
| 3NJE5 |
Transcriptional regulator |
ACIAD1082 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NMI8 |
Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG |
ACIAD1095 |
ureG |
urease accessory protein |
COG0378 |
cobW |
K03189 |
| 3NM05 |
LysR substrate binding domain |
ACIAD1152 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NKAU |
Sigma-70, region 4 |
ACIAD1161 |
|
putative RNA polymerase sigma factor |
COG1595 |
Sigma70_r2, Sigma70_r4_2 |
K03088 |
| 3NMVH |
Autoinducer binding domain |
ACIAD1165 |
|
putative transcriptional regulator, luxR family |
|
Autoind_bind, GerE |
|
| 3NJTY |
Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair |
ACIAD1204 |
hepA |
RNA helicase |
COG0553 |
Helicase_C, RapA_C, SNF2_N |
K03580 |
| 3NJDT |
Bacterial regulatory proteins, tetR family |
ACIAD1206 |
|
putative transcriptional regulator (tetR family) |
COG1309 |
TetR_N |
K22105 |
| 3NJRH |
Transcriptional regulator |
ACIAD1230 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NJS7 |
helix_turn_helix, cAMP Regulatory protein |
ACIAD1262 |
vfr |
cyclic AMP receptor protein |
COG0664 |
Crp, cNMP_binding |
K10914 |
| 3NPJ1 |
Acetyltransferase (GNAT) domain |
ACIAD1264 |
|
putative acyltransferase; putative acyltransferase for phosphonate utilization (PhnO) |
|
Acetyltransf_1 |
|
| 1T0WU |
AsnC family |
ACIAD1283 |
argR |
transcription regulator ArgR |
|
AsnC_trans_reg, HTH_AsnC-type |
|
| 3NTAV |
LysR substrate binding domain |
ACIAD1294 |
|
putative transcriptional regulator (GbuR) |
|
HTH_1, LysR_substrate |
|
| 3NM34 |
Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology |
ACIAD1300 |
|
putative transcriptional regulator |
|
HTH_1, LysR_substrate |
|
| 3NJ2U |
RNA polymerase sigma factor RpoH |
ACIAD1311 |
rpoH |
sigma H (sigma 32) factor of RNA polymerase |
COG0568 |
Sigma70_r1_2, Sigma70_r2, Sigma70_r4 |
K03089 |
| 3NPC2 |
'Cold-shock' DNA-binding domain |
ACIAD1313 |
|
putative cold shock protein (CspA-like) |
|
CSD |
|
| 3NIY4 |
DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA |
ACIAD1314 |
rhlB |
ATP-dependent RNA helicase (DEAD box) |
COG0513 |
DEAD, Helicase_C |
K03732 |
| 3NNGX |
Protein tyrosine kinase |
ACIAD1336 |
|
putative kinase |
|
Pkinase |
|
| 3NKM4 |
Lrp/AsnC ligand binding domain |
ACIAD1344 |
|
putative transcriptional regulator |
|
AsnC_trans_reg, HTH_AsnC-type |
|
| 3NK38 |
Bacterial regulatory proteins, tetR family |
ACIAD1367 |
|
putative transcriptional regulator |
COG1309 |
TetR_N |
K18137 |
| 3NJTK |
Transcriptional regulator |
ACIAD1405 |
iscR |
repressor of the iscRSUA operon, involved in assembly of Fe-S clusters |
COG1959 |
Rrf2 |
K13643 |
| 3NM1G |
Cupin |
ACIAD1410 |
alkR |
transcriptional regulator (XylS/AraC family) |
COG2207 |
Cupin_6, HTH_18 |
K21747 |
| 3NMHN |
Transcriptional regulatory protein, C terminal |
ACIAD1422 |
|
putative 2-component regulatory protein |
|
Response_reg, Trans_reg_C |
|
| 3NT7Q |
LysR substrate binding domain |
ACIAD1425 |
salR |
transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NJDJ |
Sigma-54 interaction domain |
ACIAD1431 |
areR |
sigma(54)-dependent transcriptionnal regulator for areCBA operon |
COG3284 |
HTH_8, Sigma54_activat |
K21405 |
| 3NJTH |
Transcriptional regulator |
ACIAD1435 |
benR |
transcriptional regulator of benzoate degradation (LysR family) |
COG0583 |
HTH_1, LysR_substrate |
K21757 |
| 3NJTH |
Transcriptional regulator |
ACIAD1445 |
catM |
HTH-type transcriptional regulator catM (Cat operon transcriptional regulator) (LysR family) |
COG0583 |
HTH_1, LysR_substrate |
K21756 |
| 3NNDT |
HxlR-like helix-turn-helix |
ACIAD1453 |
|
putative transcriptional regulator |
|
HxlR |
|
| 3NJ7F |
Arabinose-binding domain of AraC transcription regulator, N-term |
ACIAD1455 |
|
putative transcriptional regulator protein (AraC family) |
|
Arabinose_bd, HTH_18 |
|
| 3NIVG |
FCD |
ACIAD1462 |
|
putative transcriptional regulator (GntR family) |
COG2186 |
FCD, GntR |
K05799 |
| 3NINI |
ECF sigma factor |
ACIAD1469 |
|
putative RNA polymerase sigma factor (iron regulated) |
COG1595 |
Sigma70_r2, Sigma70_r4_2 |
K03088 |
| 3NTMK |
Sigma-54 interaction domain |
ACIAD1519 |
|
putative sigma-54 dependent transcriptional regulator |
|
Sigma54_activat |
|
| 3NKPJ |
LysR substrate binding domain |
ACIAD1539 |
TcuR |
putative transcriptional regulator (LysR family) |
COG0583 |
HTH_1, LysR_substrate |
K13794 |
| 3NMKS |
LysR substrate binding domain |
ACIAD1543 |
|
putative transcriptional regulator (LysR family) |
COG0583 |
HTH_1, LysR_substrate |
K13794 |
| 3NM3H |
HxlR-like helix-turn-helix |
ACIAD1545 |
|
conserved hypothetical protein |
|
HxlR |
|
| 3NNRE |
helix_turn_helix multiple antibiotic resistance protein |
ACIAD1559 |
|
putative transcriptional regulator (MarR family) |
|
|
|
| 1RJPK |
AraC Family |
ACIAD1576 |
|
putative transcriptional regulator (AraC family) |
|
HTH_18 |
|
| 3NQC5 |
Bacterial regulatory proteins, tetR family |
ACIAD1581 |
|
putative transcriptional regulator (TetR family) |
|
TetR_N |
|
| 3NM4K |
Crp-like helix-turn-helix domain |
ACIAD1591 |
|
putative transcriptional regulator |
|
HTH_Crp_2, cNMP_binding |
|
| 3NN18 |
Crp-like helix-turn-helix domain |
ACIAD1599 |
|
putative transcriptional regulator |
|
HTH_Crp_2, cNMP_binding |
|
| 3NT53 |
LysR substrate binding domain |
ACIAD1602 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NIIJ |
Arabinose-binding domain of AraC transcription regulator, N-term |
ACIAD1610 |
|
putative transcriptional regulator (AraC family) |
|
Arabinose_bd, HTH_18 |
|
| 3NTAY |
AraC-binding-like domain |
ACIAD1622 |
|
putative transcriptional regulator (AraC family) (nitrilase regulator) |
|
AraC_binding_2, HTH_18 |
|
| 3NT06 |
Sigma-54 interaction domain |
ACIAD1624 |
|
putative transcriptional regulator protein with Sigma-54 factor interaction domain. |
|
HTH_8, Sigma54_activat |
|
| 3NNKB |
Helix-turn-helix XRE-family like proteins |
ACIAD1638 |
|
putative transcription regulator protein |
|
HTH_3 |
|
| 3NJUQ |
helix_turn_helix ASNC type |
ACIAD1648 |
lrp |
leucine-responsive regulatory protein |
COG1522 |
AsnC_trans_reg, HTH_AsnC-type |
K03719 |
| 3NKCS |
NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form |
ACIAD1650 |
npdA |
NAD-dependent deacetylase (Regulatory protein sirtuin family) |
COG0846 |
SIR2 |
K12410 |
| 3NJ3A |
Virulence activator alpha C-term |
ACIAD1653 |
|
putative transcriptional regulator, PadR family |
|
PadR, Vir_act_alpha_C |
|
| 3NIKU |
LysR substrate binding domain |
ACIAD1656 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NTGP |
HD domain |
ACIAD1657 |
|
conserved hypothetical protein |
|
|
|
| 3NK0E |
LysR substrate binding domain |
ACIAD1659 |
|
putative transcriptional regulator (LysR family); putative glycine cleavage system transcriptional activator (Gcv operon activator)(GcvA) |
|
HTH_1, LysR_substrate |
|
| 3NKPU |
LysR substrate binding domain |
ACIAD1675 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NJ66 |
helix_turn_helix isocitrate lyase regulation |
ACIAD1684 |
dcaS |
transcriptional regulator (IclR family) |
|
HTH_IclR, IclR |
|
| 3NJ66 |
helix_turn_helix isocitrate lyase regulation |
ACIAD1688 |
dcaR |
transcriptional regulator (IclR family) |
|
HTH_IclR, IclR |
|
| 3NK62 |
helix_turn_helix isocitrate lyase regulation |
ACIAD1702 |
pcaU |
regulatory protein for pca operon (activator) |
COG1414 |
HTH_IclR, IclR |
K02624 |
| 3NT4U |
helix_turn_helix isocitrate lyase regulation |
ACIAD1718 |
pobR |
p-hydroxybenzoate hydroxylase transcriptional activator |
COG1414 |
HTH_IclR, IclR |
K02624 |
| 3NKYG |
helix_turn_helix multiple antibiotic resistance protein |
ACIAD1728 |
hcaR |
Repressor protein of the Hydroxycinnamate (hca) catabolic genes |
|
MarR |
|
| 3NM7F |
Bacterial regulatory proteins, tetR family |
ACIAD1729 |
|
putative transcriptional regulator (TetR/AcrR family) |
|
TetR_N |
|
| 3NM1H |
LysR substrate binding domain |
ACIAD1745 |
|
putative transcriptional regulator (LysR family) |
COG0583 |
HTH_1, LysR_substrate |
K21645 |
| 3NNUR |
helix_turn_helix multiple antibiotic resistance protein |
ACIAD1747 |
|
putative transcriptionnal regulator (MarR family) |
|
MarR |
|
| 3NNZT |
Helix-turn-helix |
ACIAD1748 |
|
putative transcriptional regulator (Cro/CI family) |
|
HTH_3 |
|
| 3NKBH |
LysR substrate binding domain |
ACIAD1762 |
mdcR |
transcriptional regulator for malonate utilization (LysR family) |
COG0583 |
HTH_1, LysR_substrate |
K13928 |
| 3NNTZ |
Sigma-70, region 4 |
ACIAD1778 |
fecI |
alternative RNAP sigma factor required for fecA promoter recognition and ferric citrate transport; activated by FecR |
COG1595 |
Sigma70_r2, Sigma70_r4_2 |
K03088 |
| 3NQ0R |
'Cold-shock' DNA-binding domain |
ACIAD1787 |
csp |
cold shock-like protein |
COG1278 |
CSD |
K03704 |
| 3NP09 |
Helix-turn-helix XRE-family like proteins |
ACIAD1802 |
|
putative transcriptional regulator |
|
HTH_3 |
|
| 3NSDC |
Winged helix DNA-binding domain |
ACIAD1811 |
|
putative transcriptional regulator (MarR/EmrR family) |
|
MarR |
|
| 3NS66 |
helix_turn_helix, arabinose operon control protein |
ACIAD1817 |
|
putative transcriptional regulator (AraC family) |
|
HTH_18 |
|
| 1SKGD |
IclR helix-turn-helix domain |
ACIAD1822 |
|
putative transcriptional regulator (IcIR family) |
|
HTH_IclR |
|
| 3NRK3 |
SMP-30/Gluconolaconase/LRE-like region |
ACIAD1825 |
|
putative transcriptional regulator; putative regucalcin family protein |
COG3386 |
SGL |
K13874 |
| 3NMK9 |
AraC-type transcriptional regulator N-terminus |
ACIAD1834 |
|
putative transcription regulator (AraC family) |
|
AraC_N, HTH_18 |
|
| 3NTMP |
AraC-type transcriptional regulator N-terminus |
ACIAD1837 |
|
hypothetical protein |
|
AraC_N, HTH_18 |
|
| 3NTMP |
AraC-type transcriptional regulator N-terminus |
ACIAD1838 |
|
putative transcriptional regulator (AraC family) |
|
AraC_N, HTH_18 |
|
| 3NTKH |
AraC-type transcriptional regulator N-terminus |
ACIAD1839 |
|
putative transcriptional regulator (AraC family) |
|
AraC_N |
|
| 3NTMP |
AraC-type transcriptional regulator N-terminus |
ACIAD1840 |
|
putative transcriptional regulator (AraC family) |
|
HTH_18 |
|
| 3NKIP |
Bacterial regulatory proteins, tetR family |
ACIAD1864 |
|
putative transcriptional regulator (TetR family) |
|
TetR_N |
|
| 3NNVM |
helix_turn_helix, Arsenical Resistance Operon Repressor |
ACIAD1865 |
|
putative transcriptional regulator (ArsR family) |
|
HTH_5 |
|
| 3NIFS |
Arabinose-binding domain of AraC transcription regulator, N-term |
ACIAD1875 |
|
putative transcriptional regulator (AraC family) |
|
Arabinose_bd, HTH_18 |
|
| 3NJQQ |
Bacterial regulatory helix-turn-helix protein, lysR family |
ACIAD1887 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1 |
|
| 3NJAE |
helix_turn_helix gluconate operon transcriptional repressor |
ACIAD1897 |
|
putative transcriptional regulator (GntR family) |
|
Aminotran_1_2, GntR |
|
| 3NIZ6 |
Lecithin retinol acyltransferase |
ACIAD1919 |
|
conserved hypothetical protein |
|
LRAT |
|
| 3NJZM |
Sigma-54 interaction domain |
ACIAD1935 |
|
putative sigma-54 dependent transcriptional regulator |
|
Sigma54_activat |
|
| 3NPBG |
Cold shock protein domain |
ACIAD1948 |
csp |
cold shock-like protein |
COG1278 |
CSD |
K03704 |
| 3NJF3 |
Bacterial regulatory proteins, tetR family |
ACIAD1973 |
|
putative transcriptional regulator |
|
TetR_N |
|
| 3NT4N |
LysR substrate binding domain |
ACIAD1979 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NIQG |
Bacterial transcription activator, effector binding domain |
ACIAD2012 |
|
putative transcriptional regulator (AraC family) |
COG3449, COG2207 |
GyrI-like, HTH_18 |
K13652 |
| 3NJP1 |
Transcriptional regulator |
ACIAD2017 |
|
putative transcriptional regulator |
|
|
|
| 3NJBP |
AraC-like ligand binding domain |
ACIAD2022 |
|
putative transcriptional regulator (AraC/XylS family) |
|
AraC_binding, HTH_18 |
|
| 3NIZN |
helix_turn_helix gluconate operon transcriptional repressor |
ACIAD2032 |
|
putative bifunctional protein [Includes: putative transcriptional regulator (GntR family); putative amino transferase] |
|
Aminotran_1_2, GntR |
|
| 3NKV6 |
transcriptional regulatory protein |
ACIAD2052 |
|
putative transcriptional regulator (YebC like) |
|
Transcrip_reg |
|
| 3NKR0 |
Lrp/AsnC ligand binding domain |
ACIAD2053 |
|
putative transcriptional regulator |
|
AsnC_trans_reg, HTH_24 |
|
| 3NK70 |
AraC-like ligand binding domain |
ACIAD2084 |
|
putative transcriptional regulator (AraC family) |
|
AraC_binding, HTH_18 |
|
| 3NNR8 |
Iron-containing redox enzyme |
ACIAD2105 |
|
conserved hypothetical protein |
|
Haem_oxygenas_2 |
|
| 3NN9E |
AntA/AntB antirepressor |
ACIAD2170 |
|
putative phage anti-repressor protein |
COG3561 |
AntA, ORF11CD3 |
K07741 |
| 1SAG3 |
TIGRFAM addiction module antidote protein, HigA family |
ACIAD2181 |
|
putative proteic killer active protein |
|
HTH_3 |
|
| 3NJV3 |
Transcriptional regulatory protein, C terminal |
ACIAD2239 |
|
putative two-component response regulator |
COG0745 |
Response_reg, Trans_reg_C |
K02483 |
| 3NMG8 |
FCD |
ACIAD2245 |
|
putative transcriptional regulator |
|
FCD, GntR |
|
| 3NSM7 |
Acetyltransferase (GNAT) domain |
ACIAD2293 |
|
putative acetyltransferase |
|
Acetyltransf_1 |
|
| 3NN6Q |
helix_turn_helix multiple antibiotic resistance protein |
ACIAD2333 |
|
putative transcriptional repressor of for multidrug resistance pump (MarR family) |
|
MarR |
|
| 3NT38 |
Arabinose-binding domain of AraC transcription regulator, N-term |
ACIAD2338 |
|
putative transcriptional regulator |
|
Arabinose_bd, HTH_18 |
|
| 3NKAG |
Cro/C1-type HTH DNA-binding domain |
ACIAD2342 |
|
conserved hypothetical protein; putative transcriptional regulator |
|
Cupin_2, HTH_3 |
|
| 3NNXJ |
This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control |
ACIAD2346 |
himD |
integration host factor (IHF),beta subunit, site specific recombination |
COG0776 |
Bac_DNA_binding |
K05788 |
| 3NJ73 |
Transcriptional regulator |
ACIAD2358 |
|
putative transcriptional regulator |
|
TetR_N |
|
| 3NJZB |
Belongs to the ParB family |
ACIAD2366 |
spoOJ |
chromosome partitioning protein |
COG1475 |
ParBc |
K03497 |
| 3NN6T |
Acetyltransferase (GNAT) domain |
ACIAD2379 |
|
putative acetyltransferase |
|
Acetyltransf_1 |
|
| 3NJ6C |
Transcriptional regulator |
ACIAD2384 |
metR |
transcriptional regulator |
COG0583 |
HTH_1, LysR_substrate |
K03576 |
| 3NP6Y |
Helix-turn-helix XRE-family like proteins |
ACIAD2393 |
cpiR |
transcriptional repressor of CpiA |
|
HTH_31 |
|
| 3NIP3 |
WYL domain |
ACIAD2439 |
mdcH |
transcriptional factor |
|
WYL |
|
| 3NNW8 |
Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters |
ACIAD2446 |
fis |
DNA-binding protein for site-specific recombination, transcription of rRNA and tRNA operons and DNA replication |
COG2901 |
HTH_8 |
K03557 |
| 1S2IZ |
Phage antirepressor protein KilAC domain |
ACIAD2479 |
|
hypothetical protein |
|
ANT, Phage_pRha |
|
| 3NKSM |
LysR substrate binding domain |
ACIAD2511 |
|
putative transcriptional regulator (LysR family) |
COG0583 |
HTH_1, LysR_substrate |
K17737 |
| 3NMDI |
LysR substrate binding domain |
ACIAD2522 |
|
putative transcriptional regulator |
|
HTH_1, LysR_substrate |
|
| 1RZ64 |
Transcriptional regulator GntR family |
ACIAD2523 |
|
putative transcriptional regulator (GntR family) |
|
FCD, GntR |
|
| 3NKAG |
Cro/C1-type HTH DNA-binding domain |
ACIAD2530 |
|
putative transcriptional regulator (methylamine catabolism) |
|
Cupin_2, HTH_3 |
|
| 3NT54 |
LysR substrate binding domain |
ACIAD2533 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NM6V |
FCD |
ACIAD2547 |
tgnR |
Trigonelline degradation transcriptional regulator |
|
FCD, GntR |
|
| 3NIID |
DNA-templated transcription, initiation |
ACIAD2571 |
|
conserved hypothetical protein |
|
|
|
| 3NJT2 |
Transcriptional regulator |
ACIAD2597 |
cbl |
transcriptional regulator cysteine biosynthesis (LysR family) |
COG0583 |
HTH_1, LysR_substrate |
K13635 |
| 3NJEX |
Belongs to the sigma-70 factor family. ECF subfamily |
ACIAD2627 |
|
putative RNA polymerase sigma factor |
COG1595 |
Sigma70_r4_2 |
K03088 |
| 3NT35 |
AraC-binding-like domain |
ACIAD2672 |
|
putative transcriptional regulator |
|
AraC_binding_2, HTH_18 |
|
| 3NJZ7 |
AraC-binding-like domain |
ACIAD2678 |
|
putative transcriptional regulator |
|
AraC_binding_2, HTH_18 |
|
| 3NT55 |
LysR substrate binding domain |
ACIAD2727 |
|
putative transcriptional regulator |
|
HTH_1, LysR_substrate |
|
| 3NM3U |
Peptidase S24-like |
ACIAD2729 |
umuD |
component of DNA polymerase V |
COG1974 |
Peptidase_S24 |
K03503 |
| 3NKFY |
Bacterial transcriptional repressor C-terminal |
ACIAD2740 |
|
putative transcriptional regulator (TetR/AcrR family) |
COG1309 |
TetR_C_13, TetR_N |
K16137 |
| 3NIP0 |
LysR substrate binding domain |
ACIAD2742 |
|
putative transcriptional regulator |
|
HTH_1, LysR_substrate |
|
| 3NIUU |
FCD |
ACIAD2759 |
|
putative transcriptional regulator (GntR family) |
|
FCD, GntR |
|
| 3NKPV |
helix_turn_helix, arabinose operon control protein |
ACIAD2778 |
fbsA |
transcriptional regulator (AraC family) |
|
HTH_18 |
|
| 3NKUC |
Bacterial regulatory proteins, tetR family |
ACIAD2793 |
|
putative transcriptional regulator (TetR family) |
|
TetR_N |
|
| 3NIG3 |
Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length |
ACIAD2814 |
greB |
transcription elongation factor and transcript cleavage |
COG0782 |
GreA_GreB, GreA_GreB_N |
K04760 |
| 3NJSA |
helix_turn_helix isocitrate lyase regulation |
ACIAD2817 |
|
putative transcriptional regulator (IcIR family) |
|
HTH_IclR, IclR |
|
| 3NIG3 |
Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length |
ACIAD2825 |
|
fragment of transcription elongation factor (GreB-like) (part 1) |
|
GreA_GreB, GreA_GreB_N |
|
| 3NIG3 |
Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length |
ACIAD2826 |
|
fragment of transcription elongation factor (GreB-like) (part 2) |
COG0782 |
GreA_GreB, GreA_GreB_N |
K04760 |
| 3NKAV |
Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides |
ACIAD2862 |
greA |
transcription elongation factor, cleaves 3' nucleotide of paused mRNA |
COG0782 |
GreA_GreB, GreA_GreB_N |
K03624 |
| 3NN3J |
helix_turn_helix, mercury resistance |
ACIAD2920 |
|
putative transcriptional regulator |
|
MerR_1 |
|
| 3NJ78 |
Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth |
ACIAD2925 |
rpoD |
sigma D (sigma 70) factor of RNA polymerase , major sigma factor during exponential growth |
COG0568 |
Sigma70_ner, Sigma70_r1_1, Sigma70_r1_2, Sigma70_r2, Sigma70_r3, Sigma70_r4 |
K03086 |
| 3NNPJ |
HxlR-like helix-turn-helix |
ACIAD2932 |
|
conserved hypothetical protein; putative transcriptional regulator |
|
HxlR |
|
| 3NIVZ |
Transcriptional regulatory protein, C terminal |
ACIAD2961 |
qseB |
transcriptional regulator |
COG0745 |
Response_reg, Trans_reg_C |
K07666 |
| 3NKT4 |
Transcriptional regulatory protein, C terminal |
ACIAD2973 |
kdpE |
regulator of kdp operon (transcriptional effector) |
COG0745 |
Response_reg, Trans_reg_C |
K07667 |
| 3NK0U |
AsnC-type helix-turn-helix domain |
ACIAD2979 |
|
putative transcriptional regulator (AsnC family) |
|
AsnC_trans_reg, HTH_24 |
|
| 3NJS4 |
Arabinose-binding domain of AraC transcription regulator, N-term |
ACIAD2986 |
|
putative transcriptional regulator (AraC family) (AdiY) |
|
Arabinose_bd, HTH_18 |
|
| 3NJ5N |
Sigma factor PP2C-like phosphatases |
ACIAD3019 |
|
putative two-component response regulator |
|
SpoIIE |
|
| 3NJX8 |
helix_turn_helix multiple antibiotic resistance protein |
ACIAD3022 |
|
putative organic hydroperoxide resistance transcriptional regulator (ohrR) |
|
MarR |
|
| 3NJ6D |
Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template |
ACIAD3038 |
rho |
transcription termination factor |
COG1158 |
ATP-synt_ab, Rho_N, Rho_RNA_bind |
K03628 |
| 3NNXR |
This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control |
ACIAD3040 |
himA |
integration host factor (IHF), alpha subunit, DNA-binding protein, DNA replication |
COG0776 |
Bac_DNA_binding |
K04764 |
| 3NJ4S |
In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance |
ACIAD3068 |
relA |
GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) (ppGpp synthetase I) ((p)ppGpp synthetase) |
COG0317 |
ACT_4, HD_4, RelA_SpoT, TGS |
K00951 |
| 3NMGS |
helix_turn_helix, mercury resistance |
ACIAD3082 |
soxR |
transcriptional activator for superoxide response, contains iron-sulfur center for redox-sensing (MerR family) |
COG0789 |
MerR, MerR-DNA-bind |
K13639 |
| 3NT56 |
LysR substrate binding domain |
ACIAD3129 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NIVN |
LysR substrate binding domain |
ACIAD3169 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NIZA |
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates |
ACIAD3194 |
rpoA |
RNA polymerase, alpha subunit |
COG0202 |
RNA_pol_A_CTD, RNA_pol_A_bac, RNA_pol_L |
K03040 |
| 3NM6H |
LysR substrate binding domain |
ACIAD3225 |
|
putative transcriptional regulator |
|
HTH_1, LysR_substrate |
|
| 3NNKA |
Transcriptional regulator |
ACIAD3227 |
|
putative transcriptional regulator, |
COG1959 |
Rrf2 |
K13771 |
| 3NPCM |
PspC domain |
ACIAD3264 |
|
conserved hypothetical protein |
|
PspC |
|
| 3NJVW |
LysR substrate binding domain |
ACIAD3274 |
|
putative transcriptional regulator (LysR family) |
|
HTH_1, LysR_substrate |
|
| 3NNVY |
Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits |
ACIAD3325 |
rpoZ |
RNA polymerase, omega subunit |
COG1758 |
RNA_pol_Rpb6 |
K03060 |
| 3NIQY |
HD domain |
ACIAD3326 |
|
putative bifunctional protein (SpoT) [Includes: guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; (p)ppGpp synthetase II] |
COG0317 |
HD_4, TGS |
K01139 |
| 3NJ56 |
Tex-like protein N-terminal domain |
ACIAD3386 |
|
putative transcriptional accessory protein |
COG2183 |
HHH_3, S1, Tex_N, Tex_YqgF |
K06959 |
| 3NIN8 |
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
ACIAD3388 |
ompR |
two-component response regulator |
COG0745 |
Response_reg, Trans_reg_C |
K07659 |
| 3NNAC |
FR47-like protein |
ACIAD3391 |
|
putative acyltransferase |
|
Acetyltransf_1 |
|
| 3NN7A |
Acetyltransferase (GNAT) domain |
ACIAD3394 |
|
conserved hypothetical protein |
|
DUF3749 |
|
| 3NJVM |
Protein of unknown function (DUF1294) |
ACIAD3402 |
|
putative cold shock protein |
|
CSD, DUF1294 |
|
| 3NJY0 |
helix_turn_helix, arabinose operon control protein |
ACIAD3406 |
|
conserved hypothetical protein; putative transcriptional regulator (AraC family) |
|
Arabinose_bd, HTH_18 |
|
| 3NIFY |
helix_turn_helix gluconate operon transcriptional repressor |
ACIAD3447 |
|
putative transcriptional regulator (GntR family) |
COG1167 |
Aminotran_1_2, GntR |
K00375 |
| 3NIGU |
Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway |
ACIAD3452 |
|
putative transcriptional activator (TenA family) |
COG0819 |
TENA_THI-4 |
K03707 |
| 3NJDD |
Sigma-70, region 4 |
ACIAD3469 |
|
putative two-component response regulator |
|
GerE, Response_reg |
|
| 3NN8C |
helix_turn_helix ASNC type |
ACIAD3472 |
|
putative transcriptional regulator (Lrp-like) |
|
HTH_24 |
|
| 3NM34 |
Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology |
ACIAD3490 |
|
putative transcriptional regulator |
|
HTH_1, LysR_substrate |
|
| 3NNWX |
Helix-turn-helix domain |
ACIAD3497 |
|
putative transcriptional regulator (ArsR family) |
|
HTH_20 |
|
| 3NTA1 |
transcriptional regulator |
ACIAD3556 |
|
putative transcriptional regulator (TetR family) |
|
TetR_N |
|
| 3NIRG |
phosphate regulon transcriptional regulatory protein PhoB |
ACIAD3557 |
phoB |
positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR |
COG0745 |
Response_reg, Trans_reg_C |
K07657 |
| 3NIY0 |
Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons |
ACIAD3572 |
nusB |
transcription termination, L factor (N utilization substance protein B) |
COG0781 |
NusB |
K03625 |
| 3NN7H |
helix_turn_helix, mercury resistance |
ACIAD3599 |
|
putative transcriptional regulator; putative detoxification transcriptional regulator |
|
MerR_1 |
|
| 3NJ8S |
helix_turn_helix gluconate operon transcriptional repressor |
ACIAD3613 |
|
putative transcriptional regulator |
|
Aminotran_1_2, GntR |
|
| 3NKDK |
LysR substrate binding domain |
ACIAD3615 |
|
putative transcriptional regulator; putative transcriptional activator |
|
HTH_1, LysR_substrate |
|
| 3NJ2F |
Bacterial regulatory proteins, tetR family |
ACIAD3626 |
|
putative transcriptional regulator |
COG1309 |
TetR_N |
K18301 |
| 3NK0Y |
LysR substrate binding domain |
ACIAD3629 |
|
putative transcriptional regulator |
|
HTH_1, LysR_substrate |
|
| 3NJUX |
LysR substrate binding domain |
ACIAD3651 |
|
putative transcriptional regulator |
|
HTH_1, LysR_substrate |
|
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K: INFORMATION STORAGE AND PROCESSING -> Transcription
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