Experimental Data - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

CM4_methanol_replicate_1 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	30337270	100 %	Reads quality
Nb of unmapped reads	420063	1.38 %
Nb of reads mapped at least once	29917207	98.62 %
Nb of reads mapped on rRNA	5556852	18.32 %
Nb of reliable reads	23434494	77.25 %
Nb of reads kept on chromosome Mchl_R NC_011757	22681499	74.76 %
Nb of reads kept on plasmid Mchl_ NC_011758	477802	1.57 %
Nb of reads kept on plasmid Mchl_ NC_011760	275193	0.91 %
Total read count on genomic objects (except rRNA) for Organism	24805483	100 %
Total read count on genomic objects (except rRNA) into chromosome Mchl_R NC_011757	24079717	97.07 %
Total read count on genomic objects (except rRNA) into plasmid Mchl_ NC_011758	453572	1.83 %
Total read count on genomic objects (except rRNA) into plasmid Mchl_ NC_011760	272194	1.1 %
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CM4_methanol_replicate_2 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	37414003	100 %	Reads quality
Nb of unmapped reads	661233	1.77 %
Nb of reads mapped at least once	36752770	98.23 %
Nb of reads mapped on rRNA	5346471	14.29 %
Nb of reliable reads	29990940	80.16 %
Nb of reads kept on chromosome Mchl_R NC_011757	28755791	76.86 %
Nb of reads kept on plasmid Mchl_ NC_011758	716167	1.91 %
Nb of reads kept on plasmid Mchl_ NC_011760	518982	1.39 %
Total read count on genomic objects (except rRNA) for Organism	30754922	100 %
Total read count on genomic objects (except rRNA) into chromosome Mchl_R NC_011757	29576632	96.17 %
Total read count on genomic objects (except rRNA) into plasmid Mchl_ NC_011758	671001	2.18 %
Total read count on genomic objects (except rRNA) into plasmid Mchl_ NC_011760	507289	1.65 %
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CM4_chloromethane_replicate_1 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	53790411	100 %	Reads quality
Nb of unmapped reads	1970643	3.66 %
Nb of reads mapped at least once	51819768	96.34 %
Nb of reads mapped on rRNA	9996510	18.58 %
Nb of reliable reads	40319843	74.96 %
Nb of reads kept on chromosome Mchl_R NC_011757	27881224	51.83 %
Nb of reads kept on plasmid Mchl_ NC_011758	11710188	21.77 %
Nb of reads kept on plasmid Mchl_ NC_011760	728431	1.35 %
Total read count on genomic objects (except rRNA) for Organism	40032663	100 %
Total read count on genomic objects (except rRNA) into chromosome Mchl_R NC_011757	29569574	73.86 %
Total read count on genomic objects (except rRNA) into plasmid Mchl_ NC_011758	9748314	24.35 %
Total read count on genomic objects (except rRNA) into plasmid Mchl_ NC_011760	714775	1.79 %
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CM4_chloromethane_replicate_2 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	36665352	100 %	Reads quality
Nb of unmapped reads	932370	2.54 %
Nb of reads mapped at least once	35732982	97.46 %
Nb of reads mapped on rRNA	9302341	25.37 %
Nb of reliable reads	25405638	69.29 %
Nb of reads kept on chromosome Mchl_R NC_011757	18898723	51.54 %
Nb of reads kept on plasmid Mchl_ NC_011758	6140787	16.75 %
Nb of reads kept on plasmid Mchl_ NC_011760	366128	1 %
Total read count on genomic objects (except rRNA) for Organism	26108997	100 %
Total read count on genomic objects (except rRNA) into chromosome Mchl_R NC_011757	20345432	77.92 %
Total read count on genomic objects (except rRNA) into plasmid Mchl_ NC_011758	5403983	20.7 %
Total read count on genomic objects (except rRNA) into plasmid Mchl_ NC_011760	359582	1.38 %
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DM4_methanol_replicate_1 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	48154448	100 %	Reads quality
Nb of unmapped reads	423210	0.88 %
Nb of reads mapped at least once	47731238	99.12 %
Nb of reads mapped on rRNA	5898637	12.25 %
Nb of reliable reads	40481130	84.07 %
Nb of reads kept on chromosome METDI	39349468	81.72 %
Nb of reads kept on plasmid p1METDI	988445	2.05 %
Nb of reads kept on plasmid p2METDI	143217	0.3 %
Total read count on genomic objects (except rRNA) for Organism	38348851	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	37744242	98.42 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	469405	1.22 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	135204	0.35 %
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DM4_methanol_replicate_2 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	38757418	100 %	Reads quality
Nb of unmapped reads	818256	2.11 %
Nb of reads mapped at least once	37939162	97.89 %
Nb of reads mapped on rRNA	8921898	23.02 %
Nb of reliable reads	27865125	71.90 %
Nb of reads kept on chromosome METDI	27318393	70.49 %
Nb of reads kept on plasmid p1METDI	470298	1.21 %
Nb of reads kept on plasmid p2METDI	76434	0.2 %
Total read count on genomic objects (except rRNA) for Organism	25813280	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	25490409	98.75 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	250214	0.97 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	72657	0.28 %
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DM4_dichloromethane_replicate_1 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	43101981	100 %	Reads quality
Nb of unmapped reads	2156706	5.00 %
Nb of reads mapped at least once	40945275	95.00 %
Nb of reads mapped on rRNA	14962708	34.71 %
Nb of reliable reads	25367570	58.85 %
Nb of reads kept on chromosome METDI	24942666	57.87 %
Nb of reads kept on plasmid p1METDI	372629	0.86 %
Nb of reads kept on plasmid p2METDI	52275	0.12 %
Total read count on genomic objects (except rRNA) for Organism	23833454	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	23580430	98.94 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	203689	0.85 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	49335	0.21 %
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DM4_dichloromethane_replicate_2 SSAHA2 version 2.5.1 dir mRNAseq solexa

Total read number	32066920	100 %	Reads quality
Nb of unmapped reads	1594150	4.97 %
Nb of reads mapped at least once	30472770	95.03 %
Nb of reads mapped on rRNA	6446913	20.10 %
Nb of reliable reads	23388807	72.94 %
Nb of reads kept on chromosome METDI	23011780	71.76 %
Nb of reads kept on plasmid p1METDI	323860	1.01 %
Nb of reads kept on plasmid p2METDI	53167	0.17 %
Total read count on genomic objects (except rRNA) for Organism	21990594	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	21758947	98.95 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	182520	0.83 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	49127	0.22 %
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