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RNA-Seq analysis
RNAseq_Abaylyi_ADP1(Stuani et al, 2014, Metabolomics 10(6):1223-1238) : RNAseq Projects
| Mapping Overview | Raw Read Count | Analysis | IGV |
Quinate_cl1
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 33706175 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 676129 | 2.01 % | |
| Nb of reads mapped at least once | 33030046 | 97.99 % | |
| Nb of reads mapped on rRNA | 4770097 | 14.15 % | |
| Nb of reliable reads | 28102394 | 83.37 % | |
| Nb of reads kept on chromosome ACIAD | 28102394 | 83.37 % | |
| Total read count on genomic objects (except rRNA) for Organism | 28267192 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome ACIAD | 28267192 | 100 % | |
| Download forward / reverse wig file | Download | ||
Quinate_cl2
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 25974068 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 968185 | 3.73 % | |
| Nb of reads mapped at least once | 25005883 | 96.27 % | |
| Nb of reads mapped on rRNA | 3518742 | 13.55 % | |
| Nb of reliable reads | 21339098 | 82.16 % | |
| Nb of reads kept on chromosome ACIAD | 21339098 | 82.16 % | |
| Total read count on genomic objects (except rRNA) for Organism | 20955576 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome ACIAD | 20955576 | 100 % | |
| Download forward / reverse wig file | Download | ||
Succinate_cl1
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 29554580 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 876092 | 2.96 % | |
| Nb of reads mapped at least once | 28678488 | 97.04 % | |
| Nb of reads mapped on rRNA | 1974201 | 6.68 % | |
| Nb of reliable reads | 26486065 | 89.62 % | |
| Nb of reads kept on chromosome ACIAD | 26486065 | 89.62 % | |
| Total read count on genomic objects (except rRNA) for Organism | 25899244 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome ACIAD | 25899244 | 100 % | |
| Download forward / reverse wig file | Download | ||
Succinate_cl2
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 22418081 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 729090 | 3.25 % | |
| Nb of reads mapped at least once | 21688991 | 96.75 % | |
| Nb of reads mapped on rRNA | 1182885 | 5.28 % | |
| Nb of reliable reads | 20302638 | 90.56 % | |
| Nb of reads kept on chromosome ACIAD | 20302638 | 90.56 % | |
| Total read count on genomic objects (except rRNA) for Organism | 19913338 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome ACIAD | 19913338 | 100 % | |
| Download forward / reverse wig file | Download | ||
