Experimental Data - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

DM4-M1+5PP bwa Version: 0.7.4-r385 dir mRNAseq solexa

Total read number	7354094	100 %	Reads quality
Nb of unmapped reads	6718324	91.35 %
Nb of reads mapped at least once	635770	8.65 %
Nb of reads mapped on rRNA	46254	0.63 %
Nb of reliable reads	545664	7.42 %
Nb of reads kept on chromosome METDI	515331	7.01 %
Nb of reads kept on plasmid p2METDI	18489	0.25 %
Nb of reads kept on plasmid p1METDI	11844	0.16 %
Total read count on genomic objects (except rRNA) for Organism	346399	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	334189	96.48 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	7589	2.19 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	4621	1.33 %
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DM4-M2+5PP bwa Version: 0.7.4-r385 dir mRNAseq solexa

Total read number	6338202	100 %	Reads quality
Nb of unmapped reads	6033222	95.19 %
Nb of reads mapped at least once	304980	4.81 %
Nb of reads mapped on rRNA	16656	0.26 %
Nb of reliable reads	255164	4.03 %
Nb of reads kept on chromosome METDI	240805	3.8 %
Nb of reads kept on plasmid p2METDI	9138	0.14 %
Nb of reads kept on plasmid p1METDI	5221	0.08 %
Total read count on genomic objects (except rRNA) for Organism	162229	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	156555	96.5 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	3466	2.14 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	2208	1.36 %
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DM4-D1+5PP bwa Version: 0.7.4-r385 dir mRNAseq solexa

Total read number	5420769	100 %	Reads quality
Nb of unmapped reads	4663502	86.03 %
Nb of reads mapped at least once	757267	13.97 %
Nb of reads mapped on rRNA	18702	0.35 %
Nb of reliable reads	697034	12.86 %
Nb of reads kept on chromosome METDI	641290	11.83 %
Nb of reads kept on plasmid p2METDI	46277	0.85 %
Nb of reads kept on plasmid p1METDI	9467	0.17 %
Total read count on genomic objects (except rRNA) for Organism	418523	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	409127	97.75 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	6260	1.5 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	3136	0.75 %
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DM4-D2+5PP bwa Version: 0.7.4-r385 dir mRNAseq solexa

Total read number	7879715	100 %	Reads quality
Nb of unmapped reads	7282243	92.42 %
Nb of reads mapped at least once	597472	7.58 %
Nb of reads mapped on rRNA	19371	0.25 %
Nb of reliable reads	534522	6.78 %
Nb of reads kept on chromosome METDI	517894	6.57 %
Nb of reads kept on plasmid p1METDI	8728	0.11 %
Nb of reads kept on plasmid p2METDI	7900	0.1 %
Total read count on genomic objects (except rRNA) for Organism	313298	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	303254	96.79 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	6164	1.97 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	3880	1.24 %
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DM4-M1-5PP bwa Version: 0.7.4-r385 dir mRNAseq solexa

Total read number	7524484	100 %	Reads quality
Nb of unmapped reads	1836985	24.41 %
Nb of reads mapped at least once	5687499	75.59 %
Nb of reads mapped on rRNA	1452302	19.30 %
Nb of reliable reads	4013036	53.33 %
Nb of reads kept on chromosome METDI	3886277	51.65 %
Nb of reads kept on plasmid p1METDI	105154	1.4 %
Nb of reads kept on plasmid p2METDI	21605	0.29 %
Total read count on genomic objects (except rRNA) for Organism	3478497	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	3377688	97.1 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	83283	2.39 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	17526	0.5 %
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DM4-M2-5PP bwa Version: 0.7.4-r385 dir mRNAseq solexa

Total read number	5361732	100 %	Reads quality
Nb of unmapped reads	1379065	25.72 %
Nb of reads mapped at least once	3982667	74.28 %
Nb of reads mapped on rRNA	915836	17.08 %
Nb of reliable reads	2912642	54.32 %
Nb of reads kept on chromosome METDI	2819178	52.58 %
Nb of reads kept on plasmid p1METDI	77122	1.44 %
Nb of reads kept on plasmid p2METDI	16342	0.3 %
Total read count on genomic objects (except rRNA) for Organism	2646748	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	2571711	97.16 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	62167	2.35 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	12870	0.49 %
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DM4-D1-5PP bwa Version: 0.7.4-r385 dir mRNAseq solexa

Total read number	4385046	100 %	Reads quality
Nb of unmapped reads	2138852	48.78 %
Nb of reads mapped at least once	2246194	51.22 %
Nb of reads mapped on rRNA	171185	3.90 %
Nb of reliable reads	1977272	45.09 %
Nb of reads kept on chromosome METDI	1947375	44.41 %
Nb of reads kept on plasmid p1METDI	22387	0.51 %
Nb of reads kept on plasmid p2METDI	7510	0.17 %
Total read count on genomic objects (except rRNA) for Organism	1863641	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	1841391	98.81 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	17676	0.95 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	4574	0.25 %
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DM4-D2-5PP bwa Version: 0.7.4-r385 dir mRNAseq solexa

Total read number	4736151	100 %	Reads quality
Nb of unmapped reads	1702066	35.94 %
Nb of reads mapped at least once	3034085	64.06 %
Nb of reads mapped on rRNA	533083	11.26 %
Nb of reliable reads	2401563	50.71 %
Nb of reads kept on chromosome METDI	2352335	49.67 %
Nb of reads kept on plasmid p1METDI	37837	0.8 %
Nb of reads kept on plasmid p2METDI	11391	0.24 %
Total read count on genomic objects (except rRNA) for Organism	2091481	100 %
Total read count on genomic objects (except rRNA) into chromosome METDI	2052879	98.15 %
Total read count on genomic objects (except rRNA) into plasmid p1METDI	29610	1.42 %
Total read count on genomic objects (except rRNA) into plasmid p2METDI	8992	0.43 %
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