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RNA-Seq analysis
TAM_Pluminescens_TT01 (Payelleville et al., 2017, Frontiers in Microbiology, 8, 14 p) : RNAseq Projects
| Mapping Overview | Raw Read Count | Analysis | IGV |
pBB_A
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 16792048 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 424063 | 2.53 % | |
| Nb of reads mapped at least once | 16367985 | 97.47 % | |
| Nb of reads mapped on rRNA | 32808 | 0.20 % | |
| Nb of reliable reads | 15184971 | 90.43 % | |
| Nb of reads kept on chromosome plu PHLUTT01 | 15184971 | 90.43 % | |
| Total read count on genomic objects (except rRNA) for Organism | 14251717 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome plu PHLUTT01 | 14251717 | 100 % | |
| Download forward / reverse wig file | Download | ||
pBB_B-2
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 18367819 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 456793 | 2.49 % | |
| Nb of reads mapped at least once | 17911026 | 97.51 % | |
| Nb of reads mapped on rRNA | 324547 | 1.77 % | |
| Nb of reliable reads | 16533196 | 90.01 % | |
| Nb of reads kept on chromosome plu PHLUTT01 | 16533196 | 90.01 % | |
| Total read count on genomic objects (except rRNA) for Organism | 15327872 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome plu PHLUTT01 | 15327872 | 100 % | |
| Download forward / reverse wig file | Download | ||
pBB_C
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 16839846 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 294509 | 1.75 % | |
| Nb of reads mapped at least once | 16545337 | 98.25 % | |
| Nb of reads mapped on rRNA | 49335 | 0.29 % | |
| Nb of reliable reads | 15694386 | 93.20 % | |
| Nb of reads kept on chromosome plu PHLUTT01 | 15694386 | 93.2 % | |
| Total read count on genomic objects (except rRNA) for Organism | 15212619 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome plu PHLUTT01 | 15212619 | 100 % | |
| Download forward / reverse wig file | Download | ||
Dam_A
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 17982263 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 454857 | 2.53 % | |
| Nb of reads mapped at least once | 17527406 | 97.47 % | |
| Nb of reads mapped on rRNA | 119550 | 0.66 % | |
| Nb of reliable reads | 16187228 | 90.02 % | |
| Nb of reads kept on chromosome plu PHLUTT01 | 16187228 | 90.02 % | |
| Total read count on genomic objects (except rRNA) for Organism | 14946247 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome plu PHLUTT01 | 14946247 | 100 % | |
| Download forward / reverse wig file | Download | ||
Dam_B
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 14266926 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 477804 | 3.35 % | |
| Nb of reads mapped at least once | 13789122 | 96.65 % | |
| Nb of reads mapped on rRNA | 43344 | 0.30 % | |
| Nb of reliable reads | 12741637 | 89.31 % | |
| Nb of reads kept on chromosome plu PHLUTT01 | 12741637 | 89.31 % | |
| Total read count on genomic objects (except rRNA) for Organism | 11956089 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome plu PHLUTT01 | 11956089 | 100 % | |
| Download forward / reverse wig file | Download | ||
Dam_C
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 19694029 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 591731 | 3.00 % | |
| Nb of reads mapped at least once | 19102298 | 97.00 % | |
| Nb of reads mapped on rRNA | 62683 | 0.32 % | |
| Nb of reliable reads | 17524437 | 88.98 % | |
| Nb of reads kept on chromosome plu PHLUTT01 | 17524437 | 88.98 % | |
| Total read count on genomic objects (except rRNA) for Organism | 16497183 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome plu PHLUTT01 | 16497183 | 100 % | |
| Download forward / reverse wig file | Download | ||
4197_A
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 10557545 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 168562 | 1.60 % | |
| Nb of reads mapped at least once | 10388983 | 98.40 % | |
| Nb of reads mapped on rRNA | 28749 | 0.27 % | |
| Nb of reliable reads | 9717014 | 92.04 % | |
| Nb of reads kept on chromosome plu PHLUTT01 | 9717014 | 92.04 % | |
| Total read count on genomic objects (except rRNA) for Organism | 9140242 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome plu PHLUTT01 | 9140242 | 100 % | |
| Download forward / reverse wig file | Download | ||
4197_B
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 21767027 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 292913 | 1.35 % | |
| Nb of reads mapped at least once | 21474114 | 98.65 % | |
| Nb of reads mapped on rRNA | 65524 | 0.30 % | |
| Nb of reliable reads | 20017944 | 91.96 % | |
| Nb of reads kept on chromosome plu PHLUTT01 | 20017944 | 91.96 % | |
| Total read count on genomic objects (except rRNA) for Organism | 18725553 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome plu PHLUTT01 | 18725553 | 100 % | |
| Download forward / reverse wig file | Download | ||
4197_C
bwa Version: 0.7.4-r385 dir mRNAseq solexa
| Total read number | 14497539 | 100 % |
Reads quality
|
|---|---|---|---|
| Nb of unmapped reads | 273778 | 1.89 % | |
| Nb of reads mapped at least once | 14223761 | 98.11 % | |
| Nb of reads mapped on rRNA | 171134 | 1.18 % | |
| Nb of reliable reads | 13219450 | 91.18 % | |
| Nb of reads kept on chromosome plu PHLUTT01 | 13219450 | 91.18 % | |
| Total read count on genomic objects (except rRNA) for Organism | 12484714 | 100 % | |
| Total read count on genomic objects (except rRNA) into chromosome plu PHLUTT01 | 12484714 | 100 % | |
| Download forward / reverse wig file | Download | ||
