Comparative Genomics - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Regions of Genomic Plasticity - PanRGP

Acinetobacter baumannii AYE

PPanGGOLiN version 0.1.4

Genome Cluster Information:

MICGC290

Computed using 68 genomes

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Strict pan-genome components

Component	Families	Genes	Genes (%)
Core-genome		1894	47.09%
Variable-genome		2128	52.91%
Pan-genome	3841	4022	100.00%

PPanGGOLiN pan-genome components

Component	Families	Genes	Genes (%)
Persistent-genome	3027	3069	76.31%
Shell-genome	282	336	8.35%
Cloud-genome	532	617	15.34%
Pan-genome	3841	4022	100.00%

Download gene information for all genomes in MICGC290:

Regions of Genomic Plasticity ^[24]

RGP Id	Gene count	Begin	End	Length	Replicon name	Replicon type	RGP Score	Persistent genes (%)	Shell genes (%)	Cloud genes (%)	Resistance genes	Macromolecular Systems	Integrons	Prophage regions	Defense systems
34	9	3818471	3824751	6280	ABAYE	chromosome	5	22.22	22.22	55.56	0	0	0	0	0
2	6	93507	100444	6937	ABAYE	chromosome	6	0	16.67	83.33	0	0	0	0	1
14	8	1869363	1878801	9438	ABAYE	chromosome	7	11.11	33.33	55.56	0	0	0	0	0
29	8	3103458	3112000	8542	ABAYE	chromosome	8	10	40	50	0	0	0	0	0
23	8	2686595	2695758	9163	ABAYE	chromosome	9	0	22.22	77.78	0	0	0	0	0
25	9	2733154	2742548	9394	ABAYE	chromosome	9	0	66.67	33.33	0	0	0	1	0
19	10	2494161	2507145	12984	ABAYE	chromosome	9	9.09	27.27	63.64	0	0	0	0	0
35	10	3843695	3854735	11040	ABAYE	chromosome	11	0	0	100	0	0	0	0	0
38	11	662	9656	8994	p2ABAUR	plasmid	12	0	75	25	0	0	0	0	0
18	17	2389871	2405713	15842	ABAYE	chromosome	12	20	40	40	0	0	0	0	1
7	6	1057826	1065966	8140	ABAYE	chromosome	15	0	0	100	0	1	0	0	1
11	16	1398953	1412680	13727	ABAYE	chromosome	16	0	100	0	0	0	0	0	0
8	18	1127796	1148694	20898	ABAYE	chromosome	17	9.52	57.14	33.33	0	0	0	0	0
22	23	2648693	2674711	26018	ABAYE	chromosome	23	0	100	0	0	0	0	0	0
21	27	2542549	2561433	18884	ABAYE	chromosome	23	10.34	34.48	55.17	0	0	0	1	0
13	25	1805289	1828396	23107	ABAYE	chromosome	24	7.14	28.57	64.29	0	0	0	0	0
27	21	2904906	2928122	23216	ABAYE	chromosome	25	0	84	16	0	0	0	0	1
30	23	3240248	3263599	23351	ABAYE	chromosome	26	0	61.54	38.46	0	1	0	0	1
15	31	1891198	1915273	24075	ABAYE	chromosome	31	0	12.9	87.1	0	0	0	0	0
4	43	548541	579874	31333	ABAYE	chromosome	43	0	0	100	0	0	0	1	0
26	45	2747038	2774973	27935	ABAYE	chromosome	45	0	62.22	37.78	0	0	0	1	0
9	50	1306511	1341588	35077	ABAYE	chromosome	49	1.96	1.96	96.08	0	0	0	1	0
1	107	746	94245	93499	p3ABAUR	plasmid	105	2.65	6.19	91.15	0	0	0	1	1
33	95	3610132	3696928	86796	ABAYE	chromosome	111	2.56	29.06	68.38	16	0	3	0	0