BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: fb63de6df40b923294a39115f444d9ae.SwissProt.fasta
           2 sequences; 540 total letters



Query= Z5813

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P39308 Uncharacterized protein YjfZ [Escherichia coli (strain K12)]   546     0.0  
P39374 Uncharacterized protein YjiC [Escherichia coli (strain K12)]   174     1e-57


>P39308 Uncharacterized protein YjfZ [Escherichia coli (strain 
K12)]
Length=264

 Score = 546 bits (1408),  Expect = 0.0
 Identities = 262/264 (99%), Positives = 264/264 (100%), Gaps = 0/264 (0%)

Query  1    MTLPTTIYSFPAYLSRFSSTDKPVKLKFHQYARATLLSNRGRDHNCDGRRTVEIHKLDLS  60
            MTLPTTIYSFPAYLSRFSSTDKPVKLKFHQYARATLLSNRGRDHNCDGRRTVEIHKLDLS
Sbjct  1    MTLPTTIYSFPAYLSRFSSTDKPVKLKFHQYARATLLSNRGRDHNCDGRRTVEIHKLDLS  60

Query  61   DWQAFNKLATKCNAYDGVTMNGDNSFGWNHEATLDNIHAQKYNKAYAGARLTAELKYLLQ  120
            DWQAFNKLAT+CNAYDG+TMNGDNSFGWNHEATLDNIHAQKYNKAYAGARLTAELKYLLQ
Sbjct  61   DWQAFNKLATRCNAYDGITMNGDNSFGWNHEATLDNIHAQKYNKAYAGARLTAELKYLLQ  120

Query  121  DVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVVTLPAQMPNCWSSELPTIDLYIDQL  180
            DVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVVTLPAQMPNCWSSELPTIDLYIDQL
Sbjct  121  DVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVVTLPAQMPNCWSSELPTIDLYIDQL  180

Query  181  RTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLSSSAAIYSGLGFERVPQERDISCAR  240
            RTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLSSSAAIYSGLGFERVPQERDISCAR
Sbjct  181  RTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLSSSAAIYSGLGFERVPQERDISCAR  240

Query  241  MYLTPANHPDLWTQENGEWIYLRN  264
            MYLTPANHPDLWTQENGEWIYLRN
Sbjct  241  MYLTPANHPDLWTQENGEWIYLRN  264


>P39374 Uncharacterized protein YjiC [Escherichia coli (strain 
K12)]
Length=276

 Score = 174 bits (440),  Expect = 1e-57
 Identities = 93/226 (41%), Positives = 133/226 (59%), Gaps = 4/226 (2%)

Query  40   RGRDHNCDGRRTVEIHKLDLSD--WQAFNKLATKCNAYDGVTMNGDNSF-GWNHEATLDN  96
            RG +HN DG+  VEI KLD+S   W  FN +   C   DG+T  G   +      + LD 
Sbjct  50   RGNNHNYDGKSVVEIRKLDISKEPWP-FNYVTGACRESDGITTTGRMLYRNLKITSALDE  108

Query  97   IHAQKYNKAYAGARLTAELKYLLQDVESFEPNSKYTIHEVVLGPGYGTPDYTGQTIGYVV  156
            I+     KA+A   L   L+  L     F+P   YT+HE+ LGPG   P Y G TIGY+ 
Sbjct  109  IYGGICKKAHATTELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYIS  168

Query  157  TLPAQMPNCWSSELPTIDLYIDQLRTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLS  216
            TLPA     W++E P ID+YIDQ+ TVTGV+N+ GF +AALLNA  +L +D  IG+ +  
Sbjct  169  TLPASQAKRWTNEQPRIDIYIDQIMTVTGVANSSGFALAALLNANIELGNDPIIGIEAYP  228

Query  217  SSAAIYSGLGFERVPQERDISCARMYLTPANHPDLWTQENGEWIYL  262
             +A I++ +G++ +P + +    RM L P++ P+L+  +NGEW Y+
Sbjct  229  GTAEIHAKMGYKVIPGDENAPLKRMTLQPSSLPELFELKNGEWNYI  274



Lambda      K        H        a         alpha
   0.320    0.136    0.421    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 112800


  Database: fb63de6df40b923294a39115f444d9ae.SwissProt.fasta
    Posted date:  May 20, 2024  1:24 PM
  Number of letters in database: 540
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40