Comparative Genomics

Z5715 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: ef3e1ecece0f0ca322c94e9f4949bfdb.SwissProt.fasta
           14 sequences; 3,130 total letters



Query= Z5715

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P30843 Transcriptional regulatory protein BasR [Escherichia coli ...  439     8e-163
P36556 Transcriptional regulatory protein BasR [Salmonella typhim...  404     3e-149
Q70FH0 Transcriptional regulatory protein PmrA [Pectobacterium pa...  274     9e-98 
P52076 Transcriptional regulatory protein QseB [Escherichia coli ...  192     1e-65 
Q8XBS3 Transcriptional regulatory protein QseB [Escherichia coli ...  192     2e-65 
P66795 Transcriptional regulatory protein QseB [Salmonella typhim...  191     3e-65 
P66796 Transcriptional regulatory protein QseB [Salmonella typhi]     191     3e-65 
Q9HV32 Response regulator protein PmrA [Pseudomonas aeruginosa (s...  186     5e-63 
P45337 Transcriptional regulatory protein QseB [Haemophilus influ...  175     8e-59 
P0CL17 Transcriptional regulatory protein TctD [Salmonella typhim...  162     8e-54 
E1WA34 Transcriptional regulatory protein TctD [Salmonella typhim...  162     8e-54 
Q8GP20 Swarming motility regulation protein RssB [Serratia marces...  158     3e-52 
Q47456 Transcriptional regulatory protein PcoR [Escherichia coli]     153     5e-50 
O07776 Transcriptional regulatory protein TcrA [Mycobacterium tub...  151     6e-49 


>P30843 Transcriptional regulatory protein BasR [Escherichia coli 
(strain K12)]
Length=222

 Score = 439 bits (1128),  Expect = 8e-163
 Identities = 221/222 (99%), Positives = 221/222 (99%), Gaps = 0/222 (0%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            MKILIVEDDTLLLQGLILAAQTEGYACD VTTARMAEQSLEAGHYSLVVLDLGLPDEDGL
Sbjct  1    MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
            HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN
Sbjct  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
            NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN
Sbjct  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180

Query  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN  222
            WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN
Sbjct  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN  222


>P36556 Transcriptional regulatory protein BasR [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=222

 Score = 404 bits (1039),  Expect = 3e-149
 Identities = 201/222 (91%), Positives = 209/222 (94%), Gaps = 0/222 (0%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            MKILIVEDDTLLLQGLILAAQTEGYACDGV+TAR AE SLE+GHYSL+VLDLGLPDEDGL
Sbjct  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
            HFL RIRQKKYTLPVLILTA DTL D+I GLDVGADDYLVKPFALEELHARIRALLRRHN
Sbjct  61   HFLTRIRQKKYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
            NQGESEL VGNLTLN+GR Q W  G+EL LTPKEYALLSRLMLKAGSPVHREILYNDIYN
Sbjct  121  NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN  180

Query  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEEN  222
            WDNEPSTNTLEVHIHNLRDKVGK+RIRTVRGFGYMLVA EE+
Sbjct  181  WDNEPSTNTLEVHIHNLRDKVGKSRIRTVRGFGYMLVATEES  222


>Q70FH0 Transcriptional regulatory protein PmrA [Pectobacterium 
parmentieri]
Length=222

 Score = 274 bits (701),  Expect = 9e-98
 Identities = 132/221 (60%), Positives = 174/221 (79%), Gaps = 0/221 (0%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            MK+LIVEDD LL +GL+LA   EGYACD   TA+ A+  + + HYSLV+LDLGLPD+DGL
Sbjct  1    MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDLGLPDDDGL  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
              L+R R+  Y  PVLILTARD + D+++GLDVGADDYL KPFAL EL AR+RAL+RR+ 
Sbjct  61   ALLSRWRKNNYQHPVLILTARDKVDDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
                S++ V N+TL++  +QV +  + ++LTPKE+A+LSRL+LKAG  VHRE+L+ DIY 
Sbjct  121  GSSNSKIQVDNITLDLNNQQVLLDEKPVVLTPKEFAILSRLVLKAGYQVHRELLHQDIYA  180

Query  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVANEE  221
            W+++PS+N+LEVHIHNLR K+GK RIRT+RGFGY+L   E+
Sbjct  181  WNDDPSSNSLEVHIHNLRQKIGKDRIRTLRGFGYLLTKGEQ  221


>P52076 Transcriptional regulatory protein QseB [Escherichia coli 
(strain K12)]
Length=219

 Score = 192 bits (489),  Expect = 1e-65
 Identities = 100/216 (46%), Positives = 137/216 (63%), Gaps = 0/216 (0%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            M+IL++EDD L+  G+       G++ D  T  R  +++L +  Y  V+LDL LP  DG 
Sbjct  1    MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
              L   R+K    PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR N
Sbjct  61   DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
             Q  +EL  GN+ L+ G+R   + GE L L PKE+ALL  LM  AG  + R+++   +Y 
Sbjct  121  GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT  180

Query  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML  216
            WD E ++N +EVH+H+LR K+G   IRTV G GY L
Sbjct  181  WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL  216


>Q8XBS3 Transcriptional regulatory protein QseB [Escherichia coli 
O157:H7]
Length=219

 Score = 192 bits (487),  Expect = 2e-65
 Identities = 100/216 (46%), Positives = 137/216 (63%), Gaps = 0/216 (0%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            M+IL++EDD L+  G+       G++ D  T  R  +++L +  Y  V+LDL LP  DG 
Sbjct  1    MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
              L   R+K    PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR N
Sbjct  61   DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
             Q  +EL  GN+ L+ G+R   + GE L L PKE+ALL  LM  AG  + R+++   +Y 
Sbjct  121  GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT  180

Query  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML  216
            WD E ++N +EVH+H+LR K+G   IRTV G GY L
Sbjct  181  WDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTL  216


>P66795 Transcriptional regulatory protein QseB [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=219

 Score = 191 bits (486),  Expect = 3e-65
 Identities = 101/216 (47%), Positives = 137/216 (63%), Gaps = 0/216 (0%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            M+IL+VEDDTL+  G+       G++ D  T  R  +++L +  Y  V+LDL LP  DG 
Sbjct  1    MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
              L   R+K    PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR +
Sbjct  61   DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
             Q  SEL  G +TLN G     + GE L L PKE+ALL  L+   G  + R+++   +YN
Sbjct  121  GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN  180

Query  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML  216
            WD++ S+N +EVH+H+LR K+G   IRTV G GY L
Sbjct  181  WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTL  216


>P66796 Transcriptional regulatory protein QseB [Salmonella typhi]
Length=219

 Score = 191 bits (486),  Expect = 3e-65
 Identities = 101/216 (47%), Positives = 137/216 (63%), Gaps = 0/216 (0%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            M+IL+VEDDTL+  G+       G++ D  T  R  +++L +  Y  V+LDL LP  DG 
Sbjct  1    MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
              L   R+K    PVLILTARD L +++ GL +GADDYL KPFAL E+ AR+ AL+RR +
Sbjct  61   DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
             Q  SEL  G +TLN G     + GE L L PKE+ALL  L+   G  + R+++   +YN
Sbjct  121  GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN  180

Query  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML  216
            WD++ S+N +EVH+H+LR K+G   IRTV G GY L
Sbjct  181  WDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTL  216


>Q9HV32 Response regulator protein PmrA [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / 
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=221

 Score = 186 bits (472),  Expect = 5e-63
 Identities = 96/214 (45%), Positives = 131/214 (61%), Gaps = 0/214 (0%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            M+IL+ EDD LL  G+    + EG   + VT    AE +L    + L+VLD+GLP   GL
Sbjct  1    MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
              L  +R +    PVL+LTARD + D++AGLD GADDYL KPF L+EL AR+RAL RR  
Sbjct  61   DILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
             +   +L+ G L L+    QV + G+ + L P+EYALL  L+  +G  + R  L   +Y 
Sbjct  121  GRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG  180

Query  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGY  214
            W  +  +N +EVH+H+LR K+G   IRTVRG GY
Sbjct  181  WSGDVESNAIEVHVHHLRRKLGNQLIRTVRGIGY  214


>P45337 Transcriptional regulatory protein QseB [Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=221

 Score = 175 bits (444),  Expect = 8e-59
 Identities = 94/216 (44%), Positives = 128/216 (59%), Gaps = 0/216 (0%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            M+IL++EDD L+  GL +     G+A D  T  +    +L +  Y  VVLDL LP  DGL
Sbjct  1    MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
              L + R     +PVLILTARDTL +++ GL  GADDYL KPFAL E+ AR++AL+RR  
Sbjct  61   EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
                S +    + L+  +R VW+  + + LT +EY LL   ML     + R  +   + +
Sbjct  121  GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS  180

Query  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML  216
            WD E S+  L+VHI+NLR K+GK  IRTV G GY L
Sbjct  181  WDEEISSGALDVHIYNLRQKLGKQFIRTVHGVGYAL  216


>P0CL17 Transcriptional regulatory protein TctD [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=224

 Score = 162 bits (411),  Expect = 8e-54
 Identities = 93/223 (42%), Positives = 135/223 (61%), Gaps = 3/223 (1%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            M++L+ ED+  L   L  A    G+A D V     A+  L +  Y+L VLD+ +P  DGL
Sbjct  1    MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
              + R+R++  TLPVL+LTAR  + D++ GL+VGADDYL KPF LEEL AR+RALLRR  
Sbjct  61   EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
             Q      +G L  +       + G+ L LTP+E ALL+ LM +   PV R+ L+  +++
Sbjct  121  GQVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS  179

Query  181  WDNEPSTNTLEVHIHNLRDKV--GKARIRTVRGFGYMLVANEE  221
             ++E S  ++E++IH LR K+     RI T+RG GY+L   +E
Sbjct  180  LNDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVLERGDE  222


>E1WA34 Transcriptional regulatory protein TctD [Salmonella typhimurium 
(strain SL1344)]
Length=224

 Score = 162 bits (411),  Expect = 8e-54
 Identities = 93/223 (42%), Positives = 135/223 (61%), Gaps = 3/223 (1%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            M++L+ ED+  L   L  A    G+A D V     A+  L +  Y+L VLD+ +P  DGL
Sbjct  1    MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
              + R+R++  TLPVL+LTAR  + D++ GL+VGADDYL KPF LEEL AR+RALLRR  
Sbjct  61   EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
             Q      +G L  +       + G+ L LTP+E ALL+ LM +   PV R+ L+  +++
Sbjct  121  GQVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS  179

Query  181  WDNEPSTNTLEVHIHNLRDKV--GKARIRTVRGFGYMLVANEE  221
             ++E S  ++E++IH LR K+     RI T+RG GY+L   +E
Sbjct  180  LNDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVLERGDE  222


>Q8GP20 Swarming motility regulation protein RssB [Serratia marcescens]
Length=219

 Score = 158 bits (400),  Expect = 3e-52
 Identities = 91/216 (42%), Positives = 127/216 (59%), Gaps = 0/216 (0%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            M IL+VEDD  L + L  A +  G+    V     AE  L +G + L++LDL LPD DGL
Sbjct  1    MNILLVEDDLQLGKALCRALELAGFNLCWVRLIADAENKLSSGGFDLMLLDLTLPDGDGL  60

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
              L   R     +P++ILTARD +   +  LD GA+D+L KPFAL EL +R++A+ RR  
Sbjct  61   QKLIAWRAAGQNIPIIILTARDRIESLVNSLDSGANDFLAKPFALPELISRVKAVNRRMA  120

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
                    +G L L+    QV +  E L+L+ KEY LL  LM  AG+ V + +L   ++ 
Sbjct  121  GFASQTWSLGALYLDPVNHQVMLDNELLMLSKKEYHLLHELMRCAGTVVRKAVLEQRLFG  180

Query  181  WDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYML  216
              +   +N+LEVH+HNLR K+GK R+ TVRG GY+L
Sbjct  181  HGDSVESNSLEVHMHNLRRKIGKDRVITVRGIGYLL  216


>Q47456 Transcriptional regulatory protein PcoR [Escherichia coli]
Length=226

 Score = 153 bits (386),  Expect = 5e-50
 Identities = 88/228 (39%), Positives = 132/228 (58%), Gaps = 12/228 (5%)

Query  2    KILIVEDDT----LLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDE  57
            +ILIVED+      L QGL+     EGY  D     R    +   G Y L++LD+ LP  
Sbjct  3    RILIVEDEQKTGRYLQQGLV----EEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFL  58

Query  58   DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR  117
            DG   ++ +R+  +  PVL LTA+D + DK+ GL++GADDYL+KPF   EL AR+R LLR
Sbjct  59   DGWQIISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLR  118

Query  118  RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND  177
            R  +Q  +   + ++T++M RR V   G+++ LT KEY LL  L+ + G  + R ++ + 
Sbjct  119  RARSQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSL  178

Query  178  IYNWDNEPSTNTLEVHIHNLRDKVG----KARIRTVRGFGYMLVANEE  221
            ++N + +  TN ++V +  LR K+        I TVRG GY+L   EE
Sbjct  179  VWNMNFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLEIREE  226


>O07776 Transcriptional regulatory protein TcrA [Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=253

 Score = 151 bits (381),  Expect = 6e-49
 Identities = 90/220 (41%), Positives = 126/220 (57%), Gaps = 4/220 (2%)

Query  1    MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL  60
            ++IL+VED+  +   L  A   EG+  D V   R A  +++ G Y  VVLD+ LP  DG 
Sbjct  23   VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF  82

Query  61   HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN  120
               AR+R+++   PVL+LTAR  +TD+IAGLD GADDYL KPF L+EL AR+RAL RR  
Sbjct  83   EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP  142

Query  121  NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN  180
                  L  G+L L+    +VW    E+ L+ KE+ LL  L+ + G    R  L    ++
Sbjct  143  IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD  202

Query  181  WDNEPSTNTLEVHIHNLRDKV----GKARIRTVRGFGYML  216
               E  +N ++V+I  LRDK+    G   + T+RG GY L
Sbjct  203  AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL  242



Lambda      K        H        a         alpha
   0.323    0.140    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 470310


  Database: ef3e1ecece0f0ca322c94e9f4949bfdb.SwissProt.fasta
    Posted date:  May 20, 2024  6:16 AM
  Number of letters in database: 3,130
  Number of sequences in database:  14



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40