BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 71718848e06e0e48ec82fa630de2232e.SwissProt.fasta
2 sequences; 578 total letters
Query= Z5701
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
P16688 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase [... 576 0.0
Q52987 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase [... 451 5e-166
>P16688 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase
[Escherichia coli (strain K12)]
Length=281
Score = 576 bits (1485), Expect = 0.0
Identities = 280/281 (99%), Positives = 281/281 (100%), Gaps = 0/281 (0%)
Query 1 MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQLTASVI 60
MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQLTASVI
Sbjct 1 MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQLTASVI 60
Query 61 GESDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDATVIQTRHRIPETPLTEDQI 120
GESDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDATVIQTRHRIPETPLTEDQI
Sbjct 61 GESDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDATVIQTRHRIPETPLTEDQI 120
Query 121 IIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYEDIARFGHIATTYAYPVKVNGR 180
IIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYEDIARFGHIATTYAYPVKVNGR
Sbjct 121 IIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYEDIARFGHIATTYAYPVKVNGR 180
Query 181 YVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPPFTRVESLDFDDHPFTVQQWDEP 240
YVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPPFTRVESLDFDDHPFTVQQWDEP
Sbjct 181 YVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPPFTRVESLDFDDHPFTVQQWDEP 240
Query 241 CAICGSTHSYLDEVVLDDAGNRMFVCSDTDYCRQQSEAKSQ 281
CAICGSTHSYLDEVVLDDAGNRMFVCSDTDYCRQQSEAK+Q
Sbjct 241 CAICGSTHSYLDEVVLDDAGNRMFVCSDTDYCRQQSEAKNQ 281
>Q52987 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase
[Rhizobium meliloti (strain 1021)]
Length=297
Score = 451 bits (1159), Expect = 5e-166
Identities = 214/275 (78%), Positives = 240/275 (87%), Gaps = 0/275 (0%)
Query 1 MANLSGYNFAYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQLTASVI 60
M +L+ YNFAYLDEQTKRMIRRAILKA+AIPGYQVPF REMPMPYGWGTGG+Q+TAS++
Sbjct 1 MNDLATYNFAYLDEQTKRMIRRAILKAIAIPGYQVPFASREMPMPYGWGTGGVQVTASIL 60
Query 61 GESDVLKVIDQGADDTTNAVSIRNFFKRVTGVNTTERTDDATVIQTRHRIPETPLTEDQI 120
G DVLKVIDQGADDTTNAVSIR FF++V V T RT +AT+IQTRHRIPE L E Q
Sbjct 61 GPDDVLKVIDQGADDTTNAVSIRAFFQKVADVAVTTRTTEATIIQTRHRIPEEQLREGQT 120
Query 121 IIFQVPIPEPLRFIEPRETETRTMHALEEYGVMQVKLYEDIARFGHIATTYAYPVKVNGR 180
+++QVPIPEPLRF+EPRETETR MHALEEYG+M VKLYEDIAR GHIATTYAYPVKV GR
Sbjct 121 LVYQVPIPEPLRFLEPRETETRKMHALEEYGLMHVKLYEDIARNGHIATTYAYPVKVEGR 180
Query 181 YVMDPSPIPKFDNPKMDMMPALQLFGAGREKRIYAVPPFTRVESLDFDDHPFTVQQWDEP 240
YVMDPSP PKFDNPKM M ALQLFGAGREKRIYAVPP+T V SLDF+DHPF VQ++D+P
Sbjct 181 YVMDPSPTPKFDNPKMHMSEALQLFGAGREKRIYAVPPYTEVVSLDFEDHPFEVQKFDKP 240
Query 241 CAICGSTHSYLDEVVLDDAGNRMFVCSDTDYCRQQ 275
CA+CG+ + YLDEVVLDD G RMFVCSDTD+C +
Sbjct 241 CALCGAENVYLDEVVLDDKGGRMFVCSDTDHCEDR 275
Lambda K H a alpha
0.322 0.138 0.422 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 129516
Database: 71718848e06e0e48ec82fa630de2232e.SwissProt.fasta
Posted date: Jun 1, 2024 4:57 PM
Number of letters in database: 578
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
