Comparative Genomics

Z5570 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 25e6a9cc6e034621f963a29d021795af.SwissProt.fasta
           26 sequences; 4,150 total letters



Query= Z5570

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q3YUY9 Regulator of sigma D [Shigella sonnei (strain Ss046)]          317     9e-117
P0AFX6 Regulator of sigma D [Shigella flexneri]                       317     9e-117
Q0SY05 Regulator of sigma D [Shigella flexneri serotype 5b (strai...  317     9e-117
B2TWI2 Regulator of sigma D [Shigella boydii serotype 18 (strain ...  317     9e-117
P0AFX4 Regulator of sigma D [Escherichia coli (strain K12)]           317     9e-117
Q31U02 Regulator of sigma D [Shigella boydii serotype 4 (strain S...  316     4e-116
B7LUK7 Regulator of sigma D [Escherichia fergusonii (strain ATCC ...  315     7e-116
Q8FB76 Regulator of sigma D [Escherichia coli O6:H1 (strain CFT07...  313     3e-115
Q32AG8 Regulator of sigma D [Shigella dysenteriae serotype 1 (str...  312     9e-115
Q0TA70 Regulator of sigma D [Escherichia coli O6:K15:H31 (strain ...  311     2e-114
A1AIG6 Regulator of sigma D [Escherichia coli O1:K1 / APEC]           311     2e-114
B7MRC1 Regulator of sigma D [Escherichia coli O81 (strain ED1a)]      311     2e-114
B7MIY1 Regulator of sigma D [Escherichia coli O45:K1 (strain S88 ...  311     2e-114
Q1R5W1 Regulator of sigma D [Escherichia coli (strain UTI89 / UPEC)]  311     2e-114
B7UPF0 Regulator of sigma D [Escherichia coli O127:H6 (strain E23...  308     6e-113
A9MHD5 Regulator of sigma D [Salmonella arizonae (strain ATCC BAA...  286     2e-104
B5QYF0 Regulator of sigma D [Salmonella enteritidis PT4 (strain P...  282     1e-102
B5FQL0 Regulator of sigma D [Salmonella dublin (strain CT_02021853)]  282     1e-102
B5F1H8 Regulator of sigma D [Salmonella agona (strain SL483)]         282     1e-102
Q9L9I6 Regulator of sigma D [Salmonella typhimurium (strain LT2 /...  282     1e-102
B5BJR4 Regulator of sigma D [Salmonella paratyphi A (strain AKU_1...  282     1e-102
A9N0K7 Regulator of sigma D [Salmonella paratyphi B (strain ATCC ...  280     6e-102
Q57H60 Regulator of sigma D [Salmonella choleraesuis (strain SC-B...  280     6e-102
B4TQK5 Regulator of sigma D [Salmonella schwarzengrund (strain CV...  280     6e-102
C0Q2S7 Regulator of sigma D [Salmonella paratyphi C (strain RKS45...  280     6e-102
P15275 Transcriptional regulatory protein AlgQ [Pseudomonas aerug...  78.2    2e-22 


>Q3YUY9 Regulator of sigma D [Shigella sonnei (strain Ss046)]
Length=158

 Score = 317 bits (813),  Expect = 9e-117
 Identities = 158/158 (100%), Positives = 158/158 (100%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158


>P0AFX6 Regulator of sigma D [Shigella flexneri]
Length=158

 Score = 317 bits (813),  Expect = 9e-117
 Identities = 158/158 (100%), Positives = 158/158 (100%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158


>Q0SY05 Regulator of sigma D [Shigella flexneri serotype 5b (strain 
8401)]
Length=158

 Score = 317 bits (813),  Expect = 9e-117
 Identities = 158/158 (100%), Positives = 158/158 (100%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158


>B2TWI2 Regulator of sigma D [Shigella boydii serotype 18 (strain 
CDC 3083-94 / BS512)]
Length=158

 Score = 317 bits (813),  Expect = 9e-117
 Identities = 158/158 (100%), Positives = 158/158 (100%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158


>P0AFX4 Regulator of sigma D [Escherichia coli (strain K12)]
Length=158

 Score = 317 bits (813),  Expect = 9e-117
 Identities = 158/158 (100%), Positives = 158/158 (100%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158


>Q31U02 Regulator of sigma D [Shigella boydii serotype 4 (strain 
Sb227)]
Length=158

 Score = 316 bits (809),  Expect = 4e-116
 Identities = 157/158 (99%), Positives = 158/158 (100%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQ+VLSDIGEALEARFVLEDKLILLVLDAARVKHPA
Sbjct  121  LEFQKVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158


>B7LUK7 Regulator of sigma D [Escherichia fergusonii (strain ATCC 
35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / 
LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)]
Length=158

 Score = 315 bits (807),  Expect = 7e-116
 Identities = 157/158 (99%), Positives = 158/158 (100%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVK+PA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKYPA  158


>Q8FB76 Regulator of sigma D [Escherichia coli O6:H1 (strain CFT073 
/ ATCC 700928 / UPEC)]
Length=158

 Score = 313 bits (803),  Expect = 3e-115
 Identities = 157/158 (99%), Positives = 157/158 (99%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMD YDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDDYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158


>Q32AG8 Regulator of sigma D [Shigella dysenteriae serotype 1 
(strain Sd197)]
Length=158

 Score = 312 bits (800),  Expect = 9e-115
 Identities = 156/158 (99%), Positives = 156/158 (99%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNL GIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLGGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLE NGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLESNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158


>Q0TA70 Regulator of sigma D [Escherichia coli O6:K15:H31 (strain 
536 / UPEC)]
Length=158

 Score = 311 bits (797),  Expect = 2e-114
 Identities = 156/158 (99%), Positives = 157/158 (99%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMD YDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDDYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVK+PA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKYPA  158


>A1AIG6 Regulator of sigma D [Escherichia coli O1:K1 / APEC]
Length=158

 Score = 311 bits (797),  Expect = 2e-114
 Identities = 156/158 (99%), Positives = 157/158 (99%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMD YDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDDYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVK+PA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKYPA  158


>B7MRC1 Regulator of sigma D [Escherichia coli O81 (strain ED1a)]
Length=158

 Score = 311 bits (797),  Expect = 2e-114
 Identities = 156/158 (99%), Positives = 157/158 (99%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMD YDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDDYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVK+PA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKYPA  158


>B7MIY1 Regulator of sigma D [Escherichia coli O45:K1 (strain 
S88 / ExPEC)]
Length=158

 Score = 311 bits (797),  Expect = 2e-114
 Identities = 156/158 (99%), Positives = 157/158 (99%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMD YDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDDYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVK+PA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKYPA  158


>Q1R5W1 Regulator of sigma D [Escherichia coli (strain UTI89 / 
UPEC)]
Length=158

 Score = 311 bits (797),  Expect = 2e-114
 Identities = 156/158 (99%), Positives = 157/158 (99%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMD YDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDDYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVK+PA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKYPA  158


>B7UPF0 Regulator of sigma D [Escherichia coli O127:H6 (strain 
E2348/69 / EPEC)]
Length=158

 Score = 308 bits (788),  Expect = 6e-113
 Identities = 155/158 (98%), Positives = 156/158 (99%), Gaps = 0/158 (0%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQLDNLTERVRGSNKLV RWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLDNLTERVRGSNKLVYRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMD YDSSLETAIDHDNY
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDDYDSSLETAIDHDNY  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA  158
            LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVK+PA
Sbjct  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKYPA  158


>A9MHD5 Regulator of sigma D [Salmonella arizonae (strain ATCC 
BAA-731 / CDC346-86 / RSK2980)]
Length=162

 Score = 286 bits (733),  Expect = 2e-104
 Identities = 146/162 (90%), Positives = 149/162 (92%), Gaps = 4/162 (2%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQL+NLTERV GSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLENLTERVGGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQL  AAKIWP LE NTQ+IMDYYDSSLETAIDHDN 
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDSSLETAIDHDNC  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDA----ARVKHPA  158
            LEFQQ LSDIGEALEARFVLEDKLI+LV DA    ARVK PA
Sbjct  121  LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA  162


>B5QYF0 Regulator of sigma D [Salmonella enteritidis PT4 (strain 
P125109)]
Length=162

 Score = 282 bits (721),  Expect = 1e-102
 Identities = 144/162 (89%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQL+NLTERV GSNKLVDRWL VRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQL  AAKIWP LE NTQ+IMDYYD+SLETAIDHDN 
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDA----ARVKHPA  158
            LEFQQ LSDIGEALEARFVLEDKLI+LV DA    ARVK PA
Sbjct  121  LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA  162


>B5FQL0 Regulator of sigma D [Salmonella dublin (strain CT_02021853)]
Length=162

 Score = 282 bits (721),  Expect = 1e-102
 Identities = 144/162 (89%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQL+NLTERV GSNKLVDRWL VRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQL  AAKIWP LE NTQ+IMDYYD+SLETAIDHDN 
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDA----ARVKHPA  158
            LEFQQ LSDIGEALEARFVLEDKLI+LV DA    ARVK PA
Sbjct  121  LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA  162


>B5F1H8 Regulator of sigma D [Salmonella agona (strain SL483)]
Length=162

 Score = 282 bits (721),  Expect = 1e-102
 Identities = 144/162 (89%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQL+NLTERV GSNKLVDRWL VRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQL  AAKIWP LE NTQ+IMDYYD+SLETAIDHDN 
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDA----ARVKHPA  158
            LEFQQ LSDIGEALEARFVLEDKLI+LV DA    ARVK PA
Sbjct  121  LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA  162


>Q9L9I6 Regulator of sigma D [Salmonella typhimurium (strain LT2 
/ SGSC1412 / ATCC 700720)]
Length=162

 Score = 282 bits (721),  Expect = 1e-102
 Identities = 144/162 (89%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQL+NLTERV GSNKLVDRWL VRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQL  AAKIWP LE NTQ+IMDYYD+SLETAIDHDN 
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDA----ARVKHPA  158
            LEFQQ LSDIGEALEARFVLEDKLI+LV DA    ARVK PA
Sbjct  121  LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA  162


>B5BJR4 Regulator of sigma D [Salmonella paratyphi A (strain AKU_12601)]
Length=162

 Score = 282 bits (721),  Expect = 1e-102
 Identities = 144/162 (89%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQL+NLTERV GSNKLVDRWL VRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS
Sbjct  1    MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQL  AAKIWP LE NTQ+IMDYYD+SLETAIDHDN 
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNR  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDA----ARVKHPA  158
            LEFQQ LSDIGEALEARFVLEDKLI+LV DA    ARVK PA
Sbjct  121  LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA  162


>A9N0K7 Regulator of sigma D [Salmonella paratyphi B (strain ATCC 
BAA-1250 / SPB7)]
Length=162

 Score = 280 bits (716),  Expect = 6e-102
 Identities = 143/162 (88%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQL+NLTERV GSNKLVDRWL VRKHLLVAYYNLVGIKPGKESYMRLNEKALD+FCQS
Sbjct  1    MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDNFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQL  AAKIWP LE NTQ+IMDYYD+SLETAIDHDN 
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDA----ARVKHPA  158
            LEFQQ LSDIGEALEARFVLEDKLI+LV DA    ARVK PA
Sbjct  121  LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA  162


>Q57H60 Regulator of sigma D [Salmonella choleraesuis (strain 
SC-B67)]
Length=162

 Score = 280 bits (716),  Expect = 6e-102
 Identities = 143/162 (88%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQL+NLTERV GSNKLVDRWL VRKHLLVAYYNLVGIKPGKESYMRLNEKALD+FCQS
Sbjct  1    MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDNFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQL  AAKIWP LE NTQ+IMDYYD+SLETAIDHDN 
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDA----ARVKHPA  158
            LEFQQ LSDIGEALEARFVLEDKLI+LV DA    ARVK PA
Sbjct  121  LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA  162


>B4TQK5 Regulator of sigma D [Salmonella schwarzengrund (strain 
CVM19633)]
Length=162

 Score = 280 bits (716),  Expect = 6e-102
 Identities = 143/162 (88%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQL+NLTERV GSNKLVDRWL VRKHLLVAYYNLVGIKPGKESYMRLNEKALD+FCQS
Sbjct  1    MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDNFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQL  AAKIWP LE NTQ+IMDYYD+SLETAIDHDN 
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDA----ARVKHPA  158
            LEFQQ LSDIGEALEARFVLEDKLI+LV DA    ARVK PA
Sbjct  121  LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA  162


>C0Q2S7 Regulator of sigma D [Salmonella paratyphi C (strain RKS4594)]
Length=162

 Score = 280 bits (716),  Expect = 6e-102
 Identities = 143/162 (88%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            MLNQL+NLTERV GSNKLVDRWL VRKHLLVAYYNLVGIKPGKESYMRLNEKALD+FCQS
Sbjct  1    MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLNEKALDNFCQS  60

Query  61   LVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQIMDYYDSSLETAIDHDNY  120
            LVDYLSAGHFSIYERILHKLEGNGQL  AAKIWP LE NTQ+IMDYYD+SLETAIDHDN 
Sbjct  61   LVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQRIMDYYDTSLETAIDHDNC  120

Query  121  LEFQQVLSDIGEALEARFVLEDKLILLVLDA----ARVKHPA  158
            LEFQQ LSDIGEALEARFVLEDKLI+LV DA    ARVK PA
Sbjct  121  LEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKRPA  162


>P15275 Transcriptional regulatory protein AlgQ [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=160

 Score = 78.2 bits (191),  Expect = 2e-22
 Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 16/157 (10%)

Query  1    MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLNEKALDDFCQS  60
            ML    N  ER  G ++L+DRWLH R+ L+ A+  L GI+         N + L  FCQ 
Sbjct  1    MLESCRNAQERWGGVHQLIDRWLHERQQLVQAFDALSGIQAPAP-----NAEELQHFCQL  55

Query  61   LVDYLSAGHFSIYERILHKLEGNGQ---LARAAKIWPQLEANTQQIMDYYDSSLETAIDH  117
            L+DY+SAGHF +YE++  + +  G    L  A +I+P+LEA T+  +++ D       D+
Sbjct  56   LLDYVSAGHFEVYEQLTAEGKAFGDQRGLELAKQIFPRLEAITESALNFND-----RCDN  110

Query  118  DNYLEFQQVLSD---IGEALEARFVLEDKLILLVLDA  151
             +  E   ++++   + + L  RF LED LI ++ +A
Sbjct  111  GDCREGACLIAELKVLRQQLHERFELEDCLIEVLHNA  147



Lambda      K        H        a         alpha
   0.324    0.140    0.410    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 382602


  Database: 25e6a9cc6e034621f963a29d021795af.SwissProt.fasta
    Posted date:  May 20, 2024  1:36 PM
  Number of letters in database: 4,150
  Number of sequences in database:  26



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40