BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 488f7a56c3ddcf01eec7fb56c933e4be.SwissProt.fasta
20 sequences; 4,220 total letters
Query= Z5159
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
P0AGA7 Transcriptional regulatory protein UhpA [Escherichia coli ... 384 7e-142
P0AGA8 Transcriptional regulatory protein UhpA [Escherichia coli ... 384 7e-142
P0AGA9 Transcriptional regulatory protein UhpA [Shigella flexneri] 384 7e-142
P0AGA6 Transcriptional regulatory protein UhpA [Escherichia coli ... 384 7e-142
P27667 Transcriptional regulatory protein UhpA [Salmonella typhim... 378 2e-139
P66797 Response regulator UvrY [Escherichia coli O6:H1 (strain CF... 126 7e-40
P66798 Response regulator UvrY [Escherichia coli O157:H7] 126 7e-40
P0AED6 Response regulator UvrY [Shigella flexneri] 125 1e-39
P0AED5 Response regulator UvrY [Escherichia coli (strain K12)] 125 1e-39
Q1M7A0 Transcriptional regulatory protein MctR [Rhizobium johnsto... 110 9e-34
O34723 Transcriptional regulatory protein DesR [Bacillus subtilis... 108 2e-33
P13800 Transcriptional regulatory protein DegU [Bacillus subtilis... 109 3e-33
P95582 Response regulator GacA [Pseudomonas viridiflava] 106 4e-32
P9WMF8 DNA-binding transcriptional activator DevR/DosR [Mycobacte... 106 4e-32
P9WMF9 DNA-binding transcriptional activator DevR/DosR [Mycobacte... 106 4e-32
P0AF31 Nitrate/nitrite response regulator protein NarL [Shigella ... 105 5e-32
P0AF29 Nitrate/nitrite response regulator protein NarL [Escherich... 105 5e-32
P0AF30 Nitrate/nitrite response regulator protein NarL [Escherich... 105 5e-32
P0AF28 Nitrate/nitrite response regulator protein NarL [Escherich... 105 5e-32
Q52376 Response regulator GacA [Pseudomonas syringae pv. syringae... 105 7e-32
>P0AGA7 Transcriptional regulatory protein UhpA [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=196
Score = 384 bits (986), Expect = 7e-142
Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI
Sbjct 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
Query 61 SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC 120
SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC
Sbjct 61 SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC 120
Query 121 YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL 180
YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL
Sbjct 121 YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL 180
Query 181 GVSNDVELARRMFDGW 196
GVSNDVELARRMFDGW
Sbjct 181 GVSNDVELARRMFDGW 196
>P0AGA8 Transcriptional regulatory protein UhpA [Escherichia coli
O157:H7]
Length=196
Score = 384 bits (986), Expect = 7e-142
Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI
Sbjct 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
Query 61 SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC 120
SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC
Sbjct 61 SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC 120
Query 121 YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL 180
YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL
Sbjct 121 YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL 180
Query 181 GVSNDVELARRMFDGW 196
GVSNDVELARRMFDGW
Sbjct 181 GVSNDVELARRMFDGW 196
>P0AGA9 Transcriptional regulatory protein UhpA [Shigella flexneri]
Length=196
Score = 384 bits (986), Expect = 7e-142
Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI
Sbjct 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
Query 61 SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC 120
SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC
Sbjct 61 SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC 120
Query 121 YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL 180
YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL
Sbjct 121 YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL 180
Query 181 GVSNDVELARRMFDGW 196
GVSNDVELARRMFDGW
Sbjct 181 GVSNDVELARRMFDGW 196
>P0AGA6 Transcriptional regulatory protein UhpA [Escherichia coli
(strain K12)]
Length=196
Score = 384 bits (986), Expect = 7e-142
Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI
Sbjct 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
Query 61 SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC 120
SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC
Sbjct 61 SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC 120
Query 121 YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL 180
YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL
Sbjct 121 YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL 180
Query 181 GVSNDVELARRMFDGW 196
GVSNDVELARRMFDGW
Sbjct 181 GVSNDVELARRMFDGW 196
>P27667 Transcriptional regulatory protein UhpA [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=196
Score = 378 bits (970), Expect = 2e-139
Identities = 191/196 (97%), Positives = 195/196 (99%), Gaps = 0/196 (0%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI
Sbjct 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
Query 61 SGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC 120
SGLELLSQLPKGMATI+LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC
Sbjct 61 SGLELLSQLPKGMATIVLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGC 120
Query 121 YLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEKL 180
YLTPDIA+KLA+GRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANL+EKL
Sbjct 121 YLTPDIAVKLAAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEKL 180
Query 181 GVSNDVELARRMFDGW 196
GVSNDVELA RMFDGW
Sbjct 181 GVSNDVELAHRMFDGW 196
>P66797 Response regulator UvrY [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=218
Score = 126 bits (316), Expect = 7e-40
Identities = 73/200 (37%), Positives = 114/200 (57%), Gaps = 12/200 (6%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MI V L+DDH +VR+G ++L ++VV E G +A+ V V + D+SMP I
Sbjct 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGI 60
Query 61 SGLELLSQLPKGMA---TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117
GLE ++ + A IML+VH L + + AGA G+LSK +P E+++A+ +V +
Sbjct 61 GGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS 120
Query 118 GGCYLTPDIAIKLASGRQDP---------LTKRERQVAEKLAQGMAVKEIAAELGLSPKT 168
G Y+ DIA ++A + +P L++RE Q+ + +G V EI+ +L LSPKT
Sbjct 121 GQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKT 180
Query 169 VHVHRANLMEKLGVSNDVEL 188
V+ +R + KL + DVEL
Sbjct 181 VNSYRYRMFSKLNIHGDVEL 200
>P66798 Response regulator UvrY [Escherichia coli O157:H7]
Length=218
Score = 126 bits (316), Expect = 7e-40
Identities = 73/200 (37%), Positives = 114/200 (57%), Gaps = 12/200 (6%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MI V L+DDH +VR+G ++L ++VV E G +A+ V V + D+SMP I
Sbjct 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGI 60
Query 61 SGLELLSQLPKGMA---TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117
GLE ++ + A IML+VH L + + AGA G+LSK +P E+++A+ +V +
Sbjct 61 GGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS 120
Query 118 GGCYLTPDIAIKLASGRQDP---------LTKRERQVAEKLAQGMAVKEIAAELGLSPKT 168
G Y+ DIA ++A + +P L++RE Q+ + +G V EI+ +L LSPKT
Sbjct 121 GQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKT 180
Query 169 VHVHRANLMEKLGVSNDVEL 188
V+ +R + KL + DVEL
Sbjct 181 VNSYRYRMFSKLNIHGDVEL 200
>P0AED6 Response regulator UvrY [Shigella flexneri]
Length=218
Score = 125 bits (314), Expect = 1e-39
Identities = 73/200 (37%), Positives = 114/200 (57%), Gaps = 12/200 (6%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MI V L+DDH +VR+G ++L ++VV E G +A+ V V + D+SMP I
Sbjct 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGI 60
Query 61 SGLELLSQLPKGMA---TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117
GLE ++ + A IML+VH L + + AGA G+LSK +P E+++A+ +V +
Sbjct 61 GGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS 120
Query 118 GGCYLTPDIAIKLASGRQDP---------LTKRERQVAEKLAQGMAVKEIAAELGLSPKT 168
G Y+ DIA ++A + +P L++RE Q+ + +G V EI+ +L LSPKT
Sbjct 121 GQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKT 180
Query 169 VHVHRANLMEKLGVSNDVEL 188
V+ +R + KL + DVEL
Sbjct 181 VNSYRYRMFSKLNIHGDVEL 200
>P0AED5 Response regulator UvrY [Escherichia coli (strain K12)]
Length=218
Score = 125 bits (314), Expect = 1e-39
Identities = 73/200 (37%), Positives = 114/200 (57%), Gaps = 12/200 (6%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MI V L+DDH +VR+G ++L ++VV E G +A+ V V + D+SMP I
Sbjct 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGI 60
Query 61 SGLELLSQLPKGMA---TIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117
GLE ++ + A IML+VH L + + AGA G+LSK +P E+++A+ +V +
Sbjct 61 GGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYS 120
Query 118 GGCYLTPDIAIKLASGRQDP---------LTKRERQVAEKLAQGMAVKEIAAELGLSPKT 168
G Y+ DIA ++A + +P L++RE Q+ + +G V EI+ +L LSPKT
Sbjct 121 GQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLMITKGQKVNEISEQLNLSPKT 180
Query 169 VHVHRANLMEKLGVSNDVEL 188
V+ +R + KL + DVEL
Sbjct 181 VNSYRYRMFSKLNIHGDVEL 200
>Q1M7A0 Transcriptional regulatory protein MctR [Rhizobium johnstonii
(strain DSM 114642 / LMG 32736 / 3841)]
Length=214
Score = 110 bits (275), Expect = 9e-34
Identities = 71/203 (35%), Positives = 108/203 (53%), Gaps = 13/203 (6%)
Query 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGV--QVCICDISMPD 59
I V LID+H +V G +L ++V G + L GR + QV + DI+MP
Sbjct 7 IRVLLIDNHPLVLDGLKAVLETFDHIEVAGTAGLAQTGLE--IGRQILPQVVLMDINMPK 64
Query 60 ISGLELL----SQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTV 115
+SG++ + ++LP+ +MLS+HDS + ++ GA G++ K S DE+++A+ TV
Sbjct 65 LSGIDAIELFRNELPQARV-VMLSMHDSREYISSSVMHGAAGYILKDVSTDEIVSAIETV 123
Query 116 ATGGCYLTPDIAIKLASGR----QDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHV 171
A GG Y + + L R DPLT RER + + G + KEIA LG++ T
Sbjct 124 AGGGTYFSSGVFDALMGERVEEGSDPLTPRERDILGLIVAGRSNKEIAETLGITSATAET 183
Query 172 HRANLMEKLGVSNDVELARRMFD 194
HR NL +KLG++ L R D
Sbjct 184 HRKNLKKKLGITTTAGLIRYALD 206
>O34723 Transcriptional regulatory protein DesR [Bacillus subtilis
(strain 168)]
Length=199
Score = 108 bits (271), Expect = 2e-33
Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 3/198 (2%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MI++ + +D ++ LL LE D++VV + +G++A+ + R VCI DI MP
Sbjct 1 MISIFIAEDQQMLLGALGSLLNLEDDMEVVGKGTTGQDAVDFVKKRQPDVCIMDIEMPGK 60
Query 61 SGLELLSQL-PKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119
+GLE +L G I+L+ P ++A+ AG +G+L K +EL A+ +V G
Sbjct 61 TGLEAAEELKDTGCKIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGK 120
Query 120 CYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLMEK 179
P++ L S +PLT RE++V E +A G KEIA EL + TV + + ++EK
Sbjct 121 RIYAPELMEDLYS-EANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEK 179
Query 180 LGVSNDVE-LARRMFDGW 196
L V N +E + R GW
Sbjct 180 LEVKNRIEAITRSKEKGW 197
>P13800 Transcriptional regulatory protein DegU [Bacillus subtilis
(strain 168)]
Length=229
Score = 109 bits (272), Expect = 3e-33
Identities = 73/222 (33%), Positives = 110/222 (50%), Gaps = 27/222 (12%)
Query 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDIS 61
+ + +IDDH + R G ++L EP +VVAE G EA + V I DI+MP+++
Sbjct 4 VNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVN 63
Query 62 GLELLSQLPK---GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118
G+E QL + I+LS+HD V AL GARG+L K D LI AV VA G
Sbjct 64 GVEATKQLVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEG 123
Query 119 GCYLTPDIAIKLASGRQ-----------------------DPLTKRERQVAEKLAQGMAV 155
G YL P + L + + LT+RE +V + LA G +
Sbjct 124 GSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSN 183
Query 156 KEIAAELGLSPKTVHVHRANLMEKLGVSNDVE-LARRMFDGW 196
+ I L +S KTV H +N+++K+ V++ + + + +GW
Sbjct 184 RGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGW 225
>P95582 Response regulator GacA [Pseudomonas viridiflava]
Length=214
Score = 106 bits (264), Expect = 4e-32
Identities = 69/201 (34%), Positives = 109/201 (54%), Gaps = 12/201 (6%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MI V ++DDH +VR+G ++L LQVV + SG E+L V + D+ MP I
Sbjct 1 MIRVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVKMPGI 60
Query 61 SGLELLSQLPKG---MATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117
GLE +L + + + ++V + + L AGA G+++K E++ A+ V
Sbjct 61 GGLEATRKLLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFA 120
Query 118 GGCYLTPDIAIKLA---------SGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKT 168
G Y++P IA +LA + D L++RE Q+A + V+ I+ +L LSPKT
Sbjct 121 GQRYISPQIAQQLALKSFQPQVNNSPFDLLSEREIQIALMIVGCQKVQTISDKLCLSPKT 180
Query 169 VHVHRANLMEKLGVSNDVELA 189
V+ +R + EKL +S+DVELA
Sbjct 181 VNTYRYRIFEKLSISSDVELA 201
>P9WMF8 DNA-binding transcriptional activator DevR/DosR [Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh)]
Length=217
Score = 106 bits (264), Expect = 4e-32
Identities = 73/202 (36%), Positives = 109/202 (54%), Gaps = 14/202 (7%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
M+ V L+DDH +VR G LLG +P+L VV E GS EA+A +P V + D+ +PD
Sbjct 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60
Query 61 SGLE----LLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVA 116
+G+E LLS++P I+ S A+++ A+ AGA G++ K EL AV V
Sbjct 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLD-AILAGASGYVVKDIKGMELARAVKDVG 119
Query 117 TGGCYLTPDIAIKL------ASGRQDP---LTKRERQVAEKLAQGMAVKEIAAELGLSPK 167
G L A L A+ +QDP LT +ER + L++G+ K+IA + L+ K
Sbjct 120 AGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEK 179
Query 168 TVHVHRANLMEKLGVSNDVELA 189
TV + + L+ KLG+ + A
Sbjct 180 TVKNYVSRLLAKLGMERRTQAA 201
>P9WMF9 DNA-binding transcriptional activator DevR/DosR [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=217
Score = 106 bits (264), Expect = 4e-32
Identities = 73/202 (36%), Positives = 109/202 (54%), Gaps = 14/202 (7%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
M+ V L+DDH +VR G LLG +P+L VV E GS EA+A +P V + D+ +PD
Sbjct 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAARPDVAVLDVRLPDG 60
Query 61 SGLE----LLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVA 116
+G+E LLS++P I+ S A+++ A+ AGA G++ K EL AV V
Sbjct 61 NGIELCRDLLSRMPDLRCLILTSYTSDEAMLD-AILAGASGYVVKDIKGMELARAVKDVG 119
Query 117 TGGCYLTPDIAIKL------ASGRQDP---LTKRERQVAEKLAQGMAVKEIAAELGLSPK 167
G L A L A+ +QDP LT +ER + L++G+ K+IA + L+ K
Sbjct 120 AGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEK 179
Query 168 TVHVHRANLMEKLGVSNDVELA 189
TV + + L+ KLG+ + A
Sbjct 180 TVKNYVSRLLAKLGMERRTQAA 201
>P0AF31 Nitrate/nitrite response regulator protein NarL [Shigella
flexneri]
Length=216
Score = 105 bits (263), Expect = 5e-32
Identities = 66/200 (33%), Positives = 109/200 (55%), Gaps = 13/200 (7%)
Query 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISG 62
T+ LIDDH ++R+G QL+ + PD+ VV E +G + + + + D++MP ++G
Sbjct 8 TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNG 67
Query 63 LELLSQLPKGMAT---IMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119
LE L +L + + ++ SV + V AL GA G+L K P++L+ A+H A G
Sbjct 68 LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 127
Query 120 CY----LTPDIAIKLASGRQ------DPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTV 169
LTP +A L + R + LT RER + + +AQG+ K IA L ++ TV
Sbjct 128 MVLSEALTPVLAASLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTV 187
Query 170 HVHRANLMEKLGVSNDVELA 189
VH ++++K+ + + VE A
Sbjct 188 KVHVKHMLKKMKLKSRVEAA 207
>P0AF29 Nitrate/nitrite response regulator protein NarL [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=216
Score = 105 bits (263), Expect = 5e-32
Identities = 66/200 (33%), Positives = 109/200 (55%), Gaps = 13/200 (7%)
Query 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISG 62
T+ LIDDH ++R+G QL+ + PD+ VV E +G + + + + D++MP ++G
Sbjct 8 TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNG 67
Query 63 LELLSQLPKGMAT---IMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119
LE L +L + + ++ SV + V AL GA G+L K P++L+ A+H A G
Sbjct 68 LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 127
Query 120 CY----LTPDIAIKLASGRQ------DPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTV 169
LTP +A L + R + LT RER + + +AQG+ K IA L ++ TV
Sbjct 128 MVLSEALTPVLAASLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTV 187
Query 170 HVHRANLMEKLGVSNDVELA 189
VH ++++K+ + + VE A
Sbjct 188 KVHVKHMLKKMKLKSRVEAA 207
>P0AF30 Nitrate/nitrite response regulator protein NarL [Escherichia
coli O157:H7]
Length=216
Score = 105 bits (263), Expect = 5e-32
Identities = 66/200 (33%), Positives = 109/200 (55%), Gaps = 13/200 (7%)
Query 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISG 62
T+ LIDDH ++R+G QL+ + PD+ VV E +G + + + + D++MP ++G
Sbjct 8 TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNG 67
Query 63 LELLSQLPKGMAT---IMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119
LE L +L + + ++ SV + V AL GA G+L K P++L+ A+H A G
Sbjct 68 LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 127
Query 120 CY----LTPDIAIKLASGRQ------DPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTV 169
LTP +A L + R + LT RER + + +AQG+ K IA L ++ TV
Sbjct 128 MVLSEALTPVLAASLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTV 187
Query 170 HVHRANLMEKLGVSNDVELA 189
VH ++++K+ + + VE A
Sbjct 188 KVHVKHMLKKMKLKSRVEAA 207
>P0AF28 Nitrate/nitrite response regulator protein NarL [Escherichia
coli (strain K12)]
Length=216
Score = 105 bits (263), Expect = 5e-32
Identities = 66/200 (33%), Positives = 109/200 (55%), Gaps = 13/200 (7%)
Query 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISG 62
T+ LIDDH ++R+G QL+ + PD+ VV E +G + + + + D++MP ++G
Sbjct 8 TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNG 67
Query 63 LELLSQLPKGMAT---IMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119
LE L +L + + ++ SV + V AL GA G+L K P++L+ A+H A G
Sbjct 68 LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 127
Query 120 CY----LTPDIAIKLASGRQ------DPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTV 169
LTP +A L + R + LT RER + + +AQG+ K IA L ++ TV
Sbjct 128 MVLSEALTPVLAASLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTV 187
Query 170 HVHRANLMEKLGVSNDVELA 189
VH ++++K+ + + VE A
Sbjct 188 KVHVKHMLKKMKLKSRVEAA 207
>Q52376 Response regulator GacA [Pseudomonas syringae pv. syringae
(strain B728a)]
Length=214
Score = 105 bits (262), Expect = 7e-32
Identities = 68/201 (34%), Positives = 109/201 (54%), Gaps = 12/201 (6%)
Query 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDI 60
MI V ++DDH +VR+G ++L LQVV + SG E+L V + D+ MP I
Sbjct 1 MIKVLVVDDHDLVRTGITRMLADIDGLQVVGQADSGEESLKKARELKPDVVLMDVKMPGI 60
Query 61 SGLELLSQLPKG---MATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117
GLE ++ + + + ++V + + L AGA G+++K E++ A+ V
Sbjct 61 GGLEATRKMLRSHPDIKVVAVTVCEEDPFPTRLLQAGAAGYMTKGAGLAEMVQAIRLVFA 120
Query 118 GGCYLTPDIAIKLA---------SGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKT 168
G Y++P IA +LA + D L++RE Q+A + V+ I+ +L LSPKT
Sbjct 121 GQRYISPQIAQQLALKSFQPQVNNSPFDLLSEREIQIALMIVGCQKVQTISDKLCLSPKT 180
Query 169 VHVHRANLMEKLGVSNDVELA 189
V+ +R + EKL +S+DVELA
Sbjct 181 VNTYRYRIFEKLSISSDVELA 201
Lambda K H a alpha
0.323 0.138 0.403 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 530400
Database: 488f7a56c3ddcf01eec7fb56c933e4be.SwissProt.fasta
Posted date: May 20, 2024 5:26 AM
Number of letters in database: 4,220
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
