BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: a31baca455278aea970774999d00b290.SwissProt.fasta
           5 sequences; 1,279 total letters



Query= Z5054

Length=269
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q9R9D6 Lipopolysaccharide core heptose(I) kinase WaaP [Escherichi...  536     0.0   
P25741 Lipopolysaccharide core heptose(I) kinase WaaP [Escherichi...  462     5e-171
Q06995 Lipopolysaccharide core heptose(I) kinase WaaP [Salmonella...  455     4e-168
Q9HUF7 Lipopolysaccharide core heptose(I) kinase WaaP [Pseudomona...  305     7e-109
P27294 Protein InaA [Escherichia coli (strain K12)]                   46.2    5e-10 


>Q9R9D6 Lipopolysaccharide core heptose(I) kinase WaaP [Escherichia 
coli]
Length=265

 Score = 536 bits (1381),  Expect = 0.0
 Identities = 264/265 (99%), Positives = 264/265 (99%), Gaps = 0/265 (0%)

Query  4    MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEI  63
            MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEI
Sbjct  1    MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEI  60

Query  64   IKNLLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAFGEKGMNPLTRTSFIITEDLTPTI  123
            IKNLLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAFGEKGMNPLTRTSFIITEDLTPTI
Sbjct  61   IKNLLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAFGEKGMNPLTRTSFIITEDLTPTI  120

Query  124  SLEDYCADWATNPPDVRVKRMLIKRVATMVHDMHAAGINHRDCYICHFLLHLPFSGKEEE  183
            SLEDYCADWATNPPDVRVKRMLIKRVATMV DMHAAGINHRDCYICHFLLHLPFSGKEEE
Sbjct  121  SLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFSGKEEE  180

Query  184  LKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILK  243
            LKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILK
Sbjct  181  LKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILK  240

Query  244  QEQGLLSQAEAKATKIRERTIRKSL  268
            QEQGLLSQAEAKATKIRERTIRKSL
Sbjct  241  QEQGLLSQAEAKATKIRERTIRKSL  265


>P25741 Lipopolysaccharide core heptose(I) kinase WaaP [Escherichia 
coli (strain K12)]
Length=265

 Score = 462 bits (1189),  Expect = 5e-171
 Identities = 222/265 (84%), Positives = 238/265 (90%), Gaps = 0/265 (0%)

Query  4    MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEI  63
            MVELKEP ATLWRGKD F EVK L GEVFRELETRRTLRFE++GKSYFLKWH+GTTLKEI
Sbjct  1    MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEI  60

Query  64   IKNLLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAFGEKGMNPLTRTSFIITEDLTPTI  123
            IKNLLSLRMPVLGADREW+AIHRL DVGVDTM G+ FGEKG+NPLTR SFIITEDLTPTI
Sbjct  61   IKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTI  120

Query  124  SLEDYCADWATNPPDVRVKRMLIKRVATMVHDMHAAGINHRDCYICHFLLHLPFSGKEEE  183
            SLEDYCADWA NPPD+RVKRMLI RVATMV  MH AGINHRDCYICHFLLHLPF+G+E+E
Sbjct  121  SLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDE  180

Query  184  LKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILK  243
            LKISVIDLHRAQ+R +VPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYF  PL+ IL 
Sbjct  181  LKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILS  240

Query  244  QEQGLLSQAEAKATKIRERTIRKSL  268
             EQ LL+ A  KA +I+ERT RK L
Sbjct  241  LEQNLLNMASVKAERIKERTQRKGL  265


>Q06995 Lipopolysaccharide core heptose(I) kinase WaaP [Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=265

 Score = 455 bits (1170),  Expect = 4e-168
 Identities = 215/265 (81%), Positives = 243/265 (92%), Gaps = 0/265 (0%)

Query  4    MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEI  63
            MVELK P  TLWRGKD FEEVKTLQGEVFRELETRRTLRFE+ GKSYFLKWH+GT+LKEI
Sbjct  1    MVELKAPLTTLWRGKDAFEEVKTLQGEVFRELETRRTLRFELDGKSYFLKWHKGTSLKEI  60

Query  64   IKNLLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAFGEKGMNPLTRTSFIITEDLTPTI  123
            +KNL+SLRMPVLGADREW+AIHRL ++GVDTM+GV FGEKG+NPLTRTSFIITEDLTPTI
Sbjct  61   VKNLISLRMPVLGADREWHAIHRLHELGVDTMHGVGFGEKGVNPLTRTSFIITEDLTPTI  120

Query  124  SLEDYCADWATNPPDVRVKRMLIKRVATMVHDMHAAGINHRDCYICHFLLHLPFSGKEEE  183
            SLEDYCADWA NPPD +VK M+IKRVATMV  MHA GINHRDCYICHFLLHLPF+G+EE+
Sbjct  121  SLEDYCADWAVNPPDAQVKWMIIKRVATMVRKMHAGGINHRDCYICHFLLHLPFTGREED  180

Query  184  LKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILK  243
            LKISVIDLHRAQ+R  VP RWRDKDLIGLYFSSMNIGLTQRDI+RFM+ YF+ PL++IL+
Sbjct  181  LKISVIDLHRAQIRQHVPLRWRDKDLIGLYFSSMNIGLTQRDIFRFMREYFSLPLREILQ  240

Query  244  QEQGLLSQAEAKATKIRERTIRKSL  268
            +E GL+ QA+ KA +I+ERTIRK+L
Sbjct  241  KESGLIHQADVKAARIKERTIRKNL  265


>Q9HUF7 Lipopolysaccharide core heptose(I) kinase WaaP [Pseudomonas 
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=268

 Score = 305 bits (781),  Expect = 7e-109
 Identities = 146/259 (56%), Positives = 188/259 (73%), Gaps = 0/259 (0%)

Query  7    LKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLKWHRGTTLKEIIKN  66
            L+EPF  LW G+DPFE V+ LQG+V+RELE RRTLR E+ G+ YF+K HRG    EI KN
Sbjct  5    LEEPFKRLWNGRDPFEAVEALQGKVYRELEGRRTLRTEVDGRGYFVKIHRGIGWGEIAKN  64

Query  67   LLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAFGEKGMNPLTRTSFIITEDLTPTISLE  126
            LL+ ++PVLGA +EW AI RL + GV TM  VA+GE+G +P  + SFI+TE+L PT+ LE
Sbjct  65   LLTAKLPVLGARQEWQAIRRLHEAGVATMTAVAYGERGSDPARQHSFIVTEELAPTVDLE  124

Query  127  DYCADWATNPPDVRVKRMLIKRVATMVHDMHAAGINHRDCYICHFLLHLPFSGKEEELKI  186
             +  DW   PP  R+KR L++ VA MV DMH AG+NHRDCYICHFLLH       ++ ++
Sbjct  125  VFSQDWRERPPPPRLKRALVEAVARMVGDMHRAGVNHRDCYICHFLLHTDKPVSADDFRL  184

Query  187  SVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILKQEQ  246
            SVIDLHRAQ R   P+RWR+KDL  LYFS+++IGLT+RD  RF++ YF  PL++IL+ E 
Sbjct  185  SVIDLHRAQTRDATPKRWRNKDLAALYFSALDIGLTRRDKLRFLRTYFRRPLREILRDEA  244

Query  247  GLLSQAEAKATKIRERTIR  265
            GLL+  E KA K+ ER  R
Sbjct  245  GLLAWMERKAEKLYERKQR  263


>P27294 Protein InaA [Escherichia coli (strain K12)]
Length=216

 Score = 46.2 bits (108),  Expect = 5e-10
 Identities = 33/121 (27%), Positives = 54/121 (45%), Gaps = 6/121 (5%)

Query  79   REWNAIHRLRDVGVDTMYGVAFGEKGMNPLTRTSFIITEDLTPTISLEDYCADWATNPPD  138
            RE   I  L   GV  +  + FGE         + ++TED+   IS+ D+ A  A +P  
Sbjct  68   REVAVIKELERAGV-IVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYS  126

Query  139  VRVKRMLIKRVATMVHDMHAAGINHRDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRT  198
              V++ ++K VA     MH+    H  CY+ H      +   E   +   +DL +++ R 
Sbjct  127  DEVRQAMLKAVALAFKKMHSINRQHGCCYVRHI-----YVKTEGNAEAGFLDLEKSRRRL  181

Query  199  R  199
            R
Sbjct  182  R  182



Lambda      K        H        a         alpha
   0.327    0.140    0.436    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 258336


  Database: a31baca455278aea970774999d00b290.SwissProt.fasta
    Posted date:  May 20, 2024  12:21 PM
  Number of letters in database: 1,279
  Number of sequences in database:  5



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40