BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: efea78fcf73104bec15e7032232f5dc3.SwissProt.fasta
           4 sequences; 140 total letters



Query= Z4955

Length=81
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6BF25 Small toxic polypeptide LdrD [Escherichia coli (strain K12)]   72.8    3e-24
P0DPD1 Small toxic polypeptide LdrC [Escherichia coli (strain K12)]   52.0    6e-16
Q6BF87 Small toxic polypeptide LdrB [Escherichia coli (strain K12)]   52.0    6e-16
P0DPD0 Small toxic polypeptide LdrA [Escherichia coli (strain K12)]   52.0    6e-16


>Q6BF25 Small toxic polypeptide LdrD [Escherichia coli (strain 
K12)]
Length=35

 Score = 72.8 bits (177),  Expect = 3e-24
 Identities = 34/35 (97%), Positives = 34/35 (97%), Gaps = 0/35 (0%)

Query  46  MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK  80
           MT AELGMAFWHDLAAPVIAGILASMIVNWLNKRK
Sbjct  1   MTFAELGMAFWHDLAAPVIAGILASMIVNWLNKRK  35


>P0DPD1 Small toxic polypeptide LdrC [Escherichia coli (strain 
K12)]
Length=35

 Score = 52.0 bits (123),  Expect = 6e-16
 Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 0/35 (0%)

Query  46  MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK  80
           MTLA+  M FWHDLAAP++AGI+ + IV+W   RK
Sbjct  1   MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK  35


>Q6BF87 Small toxic polypeptide LdrB [Escherichia coli (strain 
K12)]
Length=35

 Score = 52.0 bits (123),  Expect = 6e-16
 Identities = 21/35 (60%), Positives = 26/35 (74%), Gaps = 0/35 (0%)

Query  46  MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK  80
           MTLA+  M FWHDLAAP++AGI+ + IV W   RK
Sbjct  1   MTLAQFAMTFWHDLAAPILAGIITAAIVGWWRNRK  35


>P0DPD0 Small toxic polypeptide LdrA [Escherichia coli (strain 
K12)]
Length=35

 Score = 52.0 bits (123),  Expect = 6e-16
 Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 0/35 (0%)

Query  46  MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK  80
           MTLA+  M FWHDLAAP++AGI+ + IV+W   RK
Sbjct  1   MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK  35



Lambda      K        H        a         alpha
   0.331    0.142    0.465    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 7100


  Database: efea78fcf73104bec15e7032232f5dc3.SwissProt.fasta
    Posted date:  May 31, 2024  8:37 AM
  Number of letters in database: 140
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40