BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: e0e6006a201b6abc08265de57ee6448b.SwissProt.fasta
23 sequences; 4,938 total letters
Query= Z4933
Length=201
Score E
Sequences producing significant alignments: (Bits) Value
P37640 Putative HTH-type transcriptional regulator YhjB [Escheric... 393 2e-145
P94439 Transcriptional regulatory protein LnrK [Bacillus subtilis... 69.3 5e-18
P29369 Glycerol metabolism activator [Pseudomonas aeruginosa (str... 65.5 1e-16
O07528 Uncharacterized transcriptional regulatory protein YhcZ [B... 63.9 5e-16
A8R3T0 Glycerol metabolism activator [Pseudomonas putida] 62.4 2e-15
P13800 Transcriptional regulatory protein DegU [Bacillus subtilis... 62.4 2e-15
Q5HEP0 Response regulator protein VraR [Staphylococcus aureus (st... 62.0 2e-15
Q2FX09 Response regulator protein VraR [Staphylococcus aureus (st... 62.0 2e-15
A5IVH2 Oxygen regulatory protein NreC [Staphylococcus aureus (str... 62.0 2e-15
Q2FVM7 Oxygen regulatory protein NreC [Staphylococcus aureus (str... 62.0 2e-15
Q2FEA6 Oxygen regulatory protein NreC [Staphylococcus aureus (str... 62.0 2e-15
A6U4C0 Oxygen regulatory protein NreC [Staphylococcus aureus (str... 62.0 2e-15
A7X623 Oxygen regulatory protein NreC [Staphylococcus aureus (str... 62.0 2e-15
Q6G850 Response regulator protein VraR [Staphylococcus aureus (st... 61.6 3e-15
Q6GFH3 Response regulator protein VraR [Staphylococcus aureus (st... 61.6 3e-15
Q7A4R9 Response regulator protein VraR [Staphylococcus aureus (st... 61.6 3e-15
Q7A2Q1 Response regulator protein VraR [Staphylococcus aureus (st... 61.6 3e-15
P0C0Z1 Response regulator protein VraR [Staphylococcus aureus (st... 61.6 3e-15
Q4L8Q6 Oxygen regulatory protein NreC [Staphylococcus haemolyticu... 61.6 3e-15
Q7WZY4 Oxygen regulatory protein NreC [Staphylococcus carnosus (s... 60.5 9e-15
P54662 Transcriptional regulatory protein DegU [Brevibacillus bre... 60.5 1e-14
P0AF28 Nitrate/nitrite response regulator protein NarL [Escherich... 59.3 2e-14
O34723 Transcriptional regulatory protein DesR [Bacillus subtilis... 57.8 7e-14
>P37640 Putative HTH-type transcriptional regulator YhjB [Escherichia
coli (strain K12)]
Length=200
Score = 393 bits (1010), Expect = 2e-145
Identities = 199/200 (99%), Positives = 200/200 (100%), Gaps = 0/200 (0%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF 60
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF
Sbjct 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF 60
Query 61 CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG 120
CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
Sbjct 61 CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG 120
Query 121 IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL 180
+MFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
Sbjct 121 MMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL 180
Query 181 YRRLEVKNRTQAAMMLNISS 200
YRRLEVKNRTQAAMMLNISS
Sbjct 181 YRRLEVKNRTQAAMMLNISS 200
>P94439 Transcriptional regulatory protein LnrK [Bacillus subtilis
(strain 168)]
Length=220
Score = 69.3 bits (168), Expect = 5e-18
Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 19/211 (9%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF 60
++I++ D Q I G+ LQ R I A E ++K + +V++D
Sbjct 2 IKIIITDDQDIVREGLASLLQLREELDVIATARNGQEAFEKAKELEPDIVLMDIRMPVSN 61
Query 61 CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG 120
+ P VKVL+ T + + E + + +D + +T AV + G
Sbjct 62 GVEGTKLITSSLPSVKVLMLTTFKDSALIAEALEEGASGYLLKDMSADTIVKAVMTVHSG 121
Query 121 IMFLP--------GDWRTTPEKDIK---------DLKSLSARQREILTMLAAGESNKEIG 163
M LP +W+ EK +K +L L+ R+ E+L L G +NKEI
Sbjct 122 GMVLPPELTAQMLNEWKR--EKQLKGINEIEKPNELLDLTEREIEVLAELGYGLNNKEIA 179
Query 164 RALNISTGTVKAHLESLYRRLEVKNRTQAAM 194
L I+ GTVK H+ ++ +L V++RTQAA+
Sbjct 180 EKLYITEGTVKNHVSNIISKLAVRDRTQAAI 210
>P29369 Glycerol metabolism activator [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG
12228 / 1C / PRS 101 / PAO1)]
Length=221
Score = 65.5 bits (158), Expect = 1e-16
Identities = 47/206 (23%), Positives = 97/206 (47%), Gaps = 13/206 (6%)
Query 2 QIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEA-LVMLDGDQDGEF 60
+I++ D +F + + PG + + D + + + L++LD + G
Sbjct 3 KILIADDHPLFREAIHNVIADGFPGSEVMETADLDSALGLTQEHDDLDLILLDLNMPGMH 62
Query 61 CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG 120
L + P + V+I + + +K+ + + I + + + + S A+ G
Sbjct 63 GLNGLMNLRNEAPTIPVVIVSAEQDKQVVLQAITYGAVGFITKSSPRAQMTEAIEQILNG 122
Query 121 IMFLPGD----WRTTPEKDIKD--------LKSLSARQREILTMLAAGESNKEIGRALNI 168
++LP D +++P + + L++L+ +Q +L + GESNK+I L+I
Sbjct 123 NVYLPSDVIRTQKSSPRRSGHEEHGISPELLQALTRKQLLVLERMTKGESNKQIAYNLDI 182
Query 169 STGTVKAHLESLYRRLEVKNRTQAAM 194
+ TVKAH+ ++ R+L+V NR QA +
Sbjct 183 AETTVKAHVSAILRKLKVHNRVQAIL 208
>O07528 Uncharacterized transcriptional regulatory protein YhcZ
[Bacillus subtilis (strain 168)]
Length=214
Score = 63.9 bits (154), Expect = 5e-16
Identities = 51/203 (25%), Positives = 95/203 (47%), Gaps = 11/203 (5%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF 60
M+IV+ D + G++ + + A+ E + +E LV++D
Sbjct 1 MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMD 60
Query 61 CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALA------- 113
++K + QFP+ +++ + ++ + + A +D+ E
Sbjct 61 GIQAIKKAIQQFPDTNIIVLTSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTRQVHGGE 120
Query 114 --VNSAAMGIMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTG 171
+++A M + + PEK+ L+ R++++LT +A G+SNKEI AL IS
Sbjct 121 YKLSTAIMPHVLTHMKNQHDPEKE--KYYQLTRREKDVLTEIANGKSNKEIAAALFISEK 178
Query 172 TVKAHLESLYRRLEVKNRTQAAM 194
TVK H+ +L +LEV +RTQAA+
Sbjct 179 TVKTHVSNLLAKLEVADRTQAAL 201
>A8R3T0 Glycerol metabolism activator [Pseudomonas putida]
Length=221
Score = 62.4 bits (150), Expect = 2e-15
Identities = 47/206 (23%), Positives = 95/206 (46%), Gaps = 13/206 (6%)
Query 2 QIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEA-LVMLDGDQDGEF 60
+I++ D +F + + PG + + D + + L++LD + G
Sbjct 3 KILIADDHPLFREAIHNVITDGFPGSEVMETADLDSALSLTGQHDDLDLILLDLNMPGMH 62
Query 61 CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG 120
L + P + V+I + + +K+ + + I + + + + S A+ G
Sbjct 63 GLGGLINLRNEAPTIPVVIVSAEQDKQVVLQAITYGAVGFITKSSPRSQMTDAIEQILNG 122
Query 121 IMFLPGD----WRTTPEKDIKD--------LKSLSARQREILTMLAAGESNKEIGRALNI 168
++LP D ++T ++ + L++L+ +Q +L + GESNK+I L+I
Sbjct 123 NVYLPPDIIRTQKSTGRRNQSEHAGFAPELLQALTRKQLLVLERMTKGESNKQIAYNLDI 182
Query 169 STGTVKAHLESLYRRLEVKNRTQAAM 194
+ TVKAH+ ++ R+L V NR QA +
Sbjct 183 AETTVKAHVSAILRKLNVHNRVQAIL 208
>P13800 Transcriptional regulatory protein DegU [Bacillus subtilis
(strain 168)]
Length=229
Score = 62.4 bits (150), Expect = 2e-15
Identities = 52/216 (24%), Positives = 99/216 (46%), Gaps = 21/216 (10%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF 60
+ IV+ D +F G+K L + DE + +E Y +V++D +
Sbjct 4 VNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVN 63
Query 61 CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG 120
++ V +PE KV+I + ++ ++ + + ++ +T AV A G
Sbjct 64 GVEATKQLVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEG 123
Query 121 IMFLP--------GDWRTT--------PEKDI-----KDLKSLSARQREILTMLAAGESN 159
+L ++R P+ ++ + L L+ R+ E+L MLA G+SN
Sbjct 124 GSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSN 183
Query 160 KEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM 195
+ IG +L IS TVK H+ ++ +++ V +RTQA ++
Sbjct 184 RGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVV 219
>Q5HEP0 Response regulator protein VraR [Staphylococcus aureus
(strain COL)]
Length=209
Score = 62.0 bits (149), Expect = 2e-15
Identities = 48/171 (28%), Positives = 90/171 (53%), Gaps = 9/171 (5%)
Query 30 QGASQADELWQKLESYPEALVM--LDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKR 87
+GAS + + + E P+ ++M L D DG ++K + P++KVL+ + +
Sbjct 33 EGASGKEAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKDL---PQIKVLMLTSFIEDK 89
Query 88 WLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG-IMFLPG---DWRTTPEKDIKDLKSLS 143
+ + V + + + ++ + A AV + G +F P R +K + + L+
Sbjct 90 EVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLT 149
Query 144 ARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAM 194
R+ EIL ++A G SN+EI A +I+ TVK H+ ++ +LEV++RTQA +
Sbjct 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVI 200
>Q2FX09 Response regulator protein VraR [Staphylococcus aureus
(strain NCTC 8325 / PS 47)]
Length=209
Score = 62.0 bits (149), Expect = 2e-15
Identities = 48/171 (28%), Positives = 90/171 (53%), Gaps = 9/171 (5%)
Query 30 QGASQADELWQKLESYPEALVM--LDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKR 87
+GAS + + + E P+ ++M L D DG ++K + P++KVL+ + +
Sbjct 33 EGASGKEAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKDL---PQIKVLMLTSFIEDK 89
Query 88 WLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG-IMFLPG---DWRTTPEKDIKDLKSLS 143
+ + V + + + ++ + A AV + G +F P R +K + + L+
Sbjct 90 EVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLT 149
Query 144 ARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAM 194
R+ EIL ++A G SN+EI A +I+ TVK H+ ++ +LEV++RTQA +
Sbjct 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVI 200
>A5IVH2 Oxygen regulatory protein NreC [Staphylococcus aureus
(strain JH9)]
Length=217
Score = 62.0 bits (149), Expect = 2e-15
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 13/204 (6%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESY-PEALVMLDGDQDGE 59
M+IV+ D ++ G + L + + A+ E +QK+ Y P+ L+M GE
Sbjct 1 MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGE 60
Query 60 FCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAM 119
K FPE K+LI ++ +L V+ + +++ E LA+ +
Sbjct 61 SGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYK 120
Query 120 GIMF--------LPGDWRTTPEKDIKD----LKSLSARQREILTMLAAGESNKEIGRALN 167
G + L ++ + +D + K LS R+ EIL ++A G NKEI L
Sbjct 121 GETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLF 180
Query 168 ISTGTVKAHLESLYRRLEVKNRTQ 191
+S TV+AH + +L +K++ +
Sbjct 181 VSVKTVEAHKTHIMTKLGLKSKPE 204
>Q2FVM7 Oxygen regulatory protein NreC [Staphylococcus aureus
(strain NCTC 8325 / PS 47)]
Length=217
Score = 62.0 bits (149), Expect = 2e-15
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 13/204 (6%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESY-PEALVMLDGDQDGE 59
M+IV+ D ++ G + L + + A+ E +QK+ Y P+ L+M GE
Sbjct 1 MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGE 60
Query 60 FCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAM 119
K FPE K+LI ++ +L V+ + +++ E LA+ +
Sbjct 61 SGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYK 120
Query 120 GIMF--------LPGDWRTTPEKDIKD----LKSLSARQREILTMLAAGESNKEIGRALN 167
G + L ++ + +D + K LS R+ EIL ++A G NKEI L
Sbjct 121 GETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLF 180
Query 168 ISTGTVKAHLESLYRRLEVKNRTQ 191
+S TV+AH + +L +K++ +
Sbjct 181 VSVKTVEAHKTHIMTKLGLKSKPE 204
>Q2FEA6 Oxygen regulatory protein NreC [Staphylococcus aureus
(strain USA300)]
Length=217
Score = 62.0 bits (149), Expect = 2e-15
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 13/204 (6%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESY-PEALVMLDGDQDGE 59
M+IV+ D ++ G + L + + A+ E +QK+ Y P+ L+M GE
Sbjct 1 MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGE 60
Query 60 FCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAM 119
K FPE K+LI ++ +L V+ + +++ E LA+ +
Sbjct 61 SGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYK 120
Query 120 GIMF--------LPGDWRTTPEKDIKD----LKSLSARQREILTMLAAGESNKEIGRALN 167
G + L ++ + +D + K LS R+ EIL ++A G NKEI L
Sbjct 121 GETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLF 180
Query 168 ISTGTVKAHLESLYRRLEVKNRTQ 191
+S TV+AH + +L +K++ +
Sbjct 181 VSVKTVEAHKTHIMTKLGLKSKPE 204
>A6U4C0 Oxygen regulatory protein NreC [Staphylococcus aureus
(strain JH1)]
Length=217
Score = 62.0 bits (149), Expect = 2e-15
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 13/204 (6%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESY-PEALVMLDGDQDGE 59
M+IV+ D ++ G + L + + A+ E +QK+ Y P+ L+M GE
Sbjct 1 MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGE 60
Query 60 FCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAM 119
K FPE K+LI ++ +L V+ + +++ E LA+ +
Sbjct 61 SGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYK 120
Query 120 GIMF--------LPGDWRTTPEKDIKD----LKSLSARQREILTMLAAGESNKEIGRALN 167
G + L ++ + +D + K LS R+ EIL ++A G NKEI L
Sbjct 121 GETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLF 180
Query 168 ISTGTVKAHLESLYRRLEVKNRTQ 191
+S TV+AH + +L +K++ +
Sbjct 181 VSVKTVEAHKTHIMTKLGLKSKPE 204
>A7X623 Oxygen regulatory protein NreC [Staphylococcus aureus
(strain Mu3 / ATCC 700698)]
Length=217
Score = 62.0 bits (149), Expect = 2e-15
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 13/204 (6%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESY-PEALVMLDGDQDGE 59
M+IV+ D ++ G + L + + A+ E +QK+ Y P+ L+M GE
Sbjct 1 MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGE 60
Query 60 FCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAM 119
K FPE K+LI ++ +L V+ + +++ E LA+ +
Sbjct 61 SGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYK 120
Query 120 GIMF--------LPGDWRTTPEKDIKD----LKSLSARQREILTMLAAGESNKEIGRALN 167
G + L ++ + +D + K LS R+ EIL ++A G NKEI L
Sbjct 121 GETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLF 180
Query 168 ISTGTVKAHLESLYRRLEVKNRTQ 191
+S TV+AH + +L +K++ +
Sbjct 181 VSVKTVEAHKTHIMTKLGLKSKPE 204
>Q6G850 Response regulator protein VraR [Staphylococcus aureus
(strain MSSA476)]
Length=209
Score = 61.6 bits (148), Expect = 3e-15
Identities = 48/171 (28%), Positives = 90/171 (53%), Gaps = 9/171 (5%)
Query 30 QGASQADELWQKLESYPEALVM--LDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKR 87
+GAS + + + E P+ ++M L D DG ++K + P++KVL+ + +
Sbjct 33 EGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDL---PQIKVLMLTSFIEDK 89
Query 88 WLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG-IMFLPG---DWRTTPEKDIKDLKSLS 143
+ + V + + + ++ + A AV + G +F P R +K + + L+
Sbjct 90 EVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLT 149
Query 144 ARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAM 194
R+ EIL ++A G SN+EI A +I+ TVK H+ ++ +LEV++RTQA +
Sbjct 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVI 200
>Q6GFH3 Response regulator protein VraR [Staphylococcus aureus
(strain MRSA252)]
Length=209
Score = 61.6 bits (148), Expect = 3e-15
Identities = 48/171 (28%), Positives = 90/171 (53%), Gaps = 9/171 (5%)
Query 30 QGASQADELWQKLESYPEALVM--LDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKR 87
+GAS + + + E P+ ++M L D DG ++K + P++KVL+ + +
Sbjct 33 EGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDL---PQIKVLMLTSFIEDK 89
Query 88 WLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG-IMFLPG---DWRTTPEKDIKDLKSLS 143
+ + V + + + ++ + A AV + G +F P R +K + + L+
Sbjct 90 EVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLT 149
Query 144 ARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAM 194
R+ EIL ++A G SN+EI A +I+ TVK H+ ++ +LEV++RTQA +
Sbjct 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVI 200
>Q7A4R9 Response regulator protein VraR [Staphylococcus aureus
(strain N315)]
Length=209
Score = 61.6 bits (148), Expect = 3e-15
Identities = 48/171 (28%), Positives = 90/171 (53%), Gaps = 9/171 (5%)
Query 30 QGASQADELWQKLESYPEALVM--LDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKR 87
+GAS + + + E P+ ++M L D DG ++K + P++KVL+ + +
Sbjct 33 EGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDL---PQIKVLMLTSFIEDK 89
Query 88 WLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG-IMFLPG---DWRTTPEKDIKDLKSLS 143
+ + V + + + ++ + A AV + G +F P R +K + + L+
Sbjct 90 EVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLT 149
Query 144 ARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAM 194
R+ EIL ++A G SN+EI A +I+ TVK H+ ++ +LEV++RTQA +
Sbjct 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVI 200
>Q7A2Q1 Response regulator protein VraR [Staphylococcus aureus
(strain Mu50 / ATCC 700699)]
Length=209
Score = 61.6 bits (148), Expect = 3e-15
Identities = 48/171 (28%), Positives = 90/171 (53%), Gaps = 9/171 (5%)
Query 30 QGASQADELWQKLESYPEALVM--LDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKR 87
+GAS + + + E P+ ++M L D DG ++K + P++KVL+ + +
Sbjct 33 EGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDL---PQIKVLMLTSFIEDK 89
Query 88 WLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG-IMFLPG---DWRTTPEKDIKDLKSLS 143
+ + V + + + ++ + A AV + G +F P R +K + + L+
Sbjct 90 EVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLT 149
Query 144 ARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAM 194
R+ EIL ++A G SN+EI A +I+ TVK H+ ++ +LEV++RTQA +
Sbjct 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVI 200
>P0C0Z1 Response regulator protein VraR [Staphylococcus aureus
(strain Mu3 / ATCC 700698)]
Length=209
Score = 61.6 bits (148), Expect = 3e-15
Identities = 48/171 (28%), Positives = 90/171 (53%), Gaps = 9/171 (5%)
Query 30 QGASQADELWQKLESYPEALVM--LDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKR 87
+GAS + + + E P+ ++M L D DG ++K + P++KVL+ + +
Sbjct 33 EGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDL---PQIKVLMLTSFIEDK 89
Query 88 WLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG-IMFLPG---DWRTTPEKDIKDLKSLS 143
+ + V + + + ++ + A AV + G +F P R +K + + L+
Sbjct 90 EVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLT 149
Query 144 ARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAM 194
R+ EIL ++A G SN+EI A +I+ TVK H+ ++ +LEV++RTQA +
Sbjct 150 EREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVI 200
>Q4L8Q6 Oxygen regulatory protein NreC [Staphylococcus haemolyticus
(strain JCSC1435)]
Length=217
Score = 61.6 bits (148), Expect = 3e-15
Identities = 51/204 (25%), Positives = 91/204 (45%), Gaps = 13/204 (6%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQK-LESYPEALVMLDGDQDGE 59
M+IV+ D ++ G + L + + A+ E +QK +E P+ L+M GE
Sbjct 1 MKIVIADDHAVVRTGFSMILNFQEDMEVVATAADGGEAYQKVMEHKPDVLIMDLSMPPGE 60
Query 60 FCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAM 119
K FPE K+LI ++ +L V+ + +++ E LAV +
Sbjct 61 SGLIATSKISESFPETKILILTMYDDEEYLFHVLRNGAKGYILKNAPDEQLLLAVRTVYK 120
Query 120 GIMFLPGDWRTTPEKDIKD------------LKSLSARQREILTMLAAGESNKEIGRALN 167
G ++ T+ + + K LS R+ EIL ++A G NK+I L
Sbjct 121 GETYVDMKLTTSLVNEFVNHKHSDDVSTNDPFKILSKRELEILPLIAKGYGNKDIAEKLF 180
Query 168 ISTGTVKAHLESLYRRLEVKNRTQ 191
+S TV+AH + +L++K++ +
Sbjct 181 VSVKTVEAHKTHIMTKLDLKSKPE 204
>Q7WZY4 Oxygen regulatory protein NreC [Staphylococcus carnosus
(strain TM300)]
Length=217
Score = 60.5 bits (145), Expect = 9e-15
Identities = 49/204 (24%), Positives = 91/204 (45%), Gaps = 13/204 (6%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQK-LESYPEALVMLDGDQDGE 59
M+IV+ D ++ G + L + + A+ E +QK ++ P+ L+M GE
Sbjct 1 MKIVIADDHAVVRTGFSMILNFQDDMEVVDTAADGVEAYQKVMQHQPDVLIMDLSMPPGE 60
Query 60 FCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAM 119
K V FP+ K+LI ++ +L V+ + +++ E AV +
Sbjct 61 SGLIATSKIVESFPDTKILILTMYDDEEYLFHVLRNGAKGYILKNAPDEQLISAVRTVYR 120
Query 120 GIMFLPGDWRTTPEKDIKD------------LKSLSARQREILTMLAAGESNKEIGRALN 167
G ++ T+ + + + LS R+ EIL ++A G NKEI L
Sbjct 121 GDTYIDPKMTTSLVNEFVNNTGQDANSTNDPFRILSKRELEILPLIAKGYGNKEIAEKLF 180
Query 168 ISTGTVKAHLESLYRRLEVKNRTQ 191
+S TV+AH + ++L +K++ +
Sbjct 181 VSVKTVEAHKTHIMQKLNLKSKPE 204
>P54662 Transcriptional regulatory protein DegU [Brevibacillus
brevis]
Length=236
Score = 60.5 bits (145), Expect = 1e-14
Identities = 48/216 (22%), Positives = 95/216 (44%), Gaps = 22/216 (10%)
Query 1 MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF 60
+QIV+ D +F G+K L + + + +E Y ++++D +
Sbjct 10 IQIVIIDDHQLFREGVKRILAMEPEFEVVADGEDGENAVELVEKYNPDVILMDINMPKVN 69
Query 61 CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG 120
+ + ++P+VKVL+ + ++ ++ V+ + ++ + AV A G
Sbjct 70 GVEATRDLIQRYPDVKVLVLSIHDDESYVTHVLKTGASGYLLKEMDADALIEAVKVVAQG 129
Query 121 IMF--------LPGDWRTTPEKDI--------------KDLKSLSARQREILTMLAAGES 158
+ L ++R +D K L L+ R+ E+L ++ G S
Sbjct 130 GAYIHPKVTHNLIKEYRRLVNEDEQESSEIGFKEVEYRKPLHILTRRECEVLQLMTDGYS 189
Query 159 NKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAM 194
N+ IG AL IS TVK H+ ++ +++ V +RTQA +
Sbjct 190 NRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVV 225
>P0AF28 Nitrate/nitrite response regulator protein NarL [Escherichia
coli (strain K12)]
Length=216
Score = 59.3 bits (142), Expect = 2e-14
Identities = 48/204 (24%), Positives = 97/204 (48%), Gaps = 10/204 (5%)
Query 3 IVMFDRQSIFIHGMKISLQQRIPGVSIQG-ASQADELWQKLESYPEALVMLDGDQDGEFC 61
I++ D + G+K L P +++ G AS ++ + ES L++LD + G
Sbjct 9 ILLIDDHPMLRTGVK-QLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNG 67
Query 62 YWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMGI 121
L K + ++++ + ++ + + + +D E A++ AA G
Sbjct 68 LETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 127
Query 122 MFLP--------GDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTV 173
M L R +D+ L+ R+R+IL ++A G NK I R L+I+ TV
Sbjct 128 MVLSEALTPVLAASLRANRATTERDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTV 187
Query 174 KAHLESLYRRLEVKNRTQAAMMLN 197
K H++ + +++++K+R +AA+ ++
Sbjct 188 KVHVKHMLKKMKLKSRVEAAVWVH 211
>O34723 Transcriptional regulatory protein DesR [Bacillus subtilis
(strain 168)]
Length=199
Score = 57.8 bits (138), Expect = 7e-14
Identities = 35/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (3%)
Query 76 KVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMGIMFLPGDWRTTPEKD 135
K++I T + Q I V + +DS E A A+ S G + E
Sbjct 75 KIIILTTFARPGYFQRAIKAGVKGYLLKDSPSEELANAIRSVMNGKRIYAPELM---EDL 131
Query 136 IKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQA 192
+ L+ R++E+L ++A G++ KEI + L+I +GTV+ ++ + +LEVKNR +A
Sbjct 132 YSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEA 188
Lambda K H a alpha
0.323 0.135 0.394 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 631548
Database: e0e6006a201b6abc08265de57ee6448b.SwissProt.fasta
Posted date: May 20, 2024 3:22 PM
Number of letters in database: 4,938
Number of sequences in database: 23
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
