Comparative Genomics

Z4933 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: dc88993036a85c0028ad2e70e8ab6963.TrEMBL.fasta
           16 sequences; 3,419 total letters



Query= Z4933

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q8X5M9 Transcriptional response regulator [Escherichia coli O157:H7]  394     6e-146
A0A0H3PTZ6 Transcriptional regulator, LuxR family [Escherichia co...  394     6e-146
C3SNM8 Transcriptional regulator [Escherichia coli]                   394     6e-146
A0A0K9TGP8 LuxR family regulatory protein [Escherichia coli M114]     393     2e-145
E1IT68 Transcriptional regulator, LuxR family [Escherichia coli M...  393     2e-145
F4TLV8 Putative HTH-type transcriptional regulator YhjB [Escheric...  393     2e-145
Q9KHT3 Putative response regulator [Pseudomonas putida]               73.2    1e-19 
A8DA11 Response regulator [Anabaena sp. (strain L31)]                 69.7    3e-18 
O05210 FlcA [Azospirillum brasilense]                                 63.5    5e-16 
A3KLC2 DNA-binding response regulator [Bacillus amyloliquefaciens]    62.4    1e-15 
Q5QSL6 DNA-binding response regulator [Bacillus licheniformis]        61.2    4e-15 
Q3LHN5 Two component response regulater [Bacillus subtilis]           60.5    7e-15 
A0A1B1V557 Putative response regulator [Streptomyces albogriseolus]   58.2    4e-14 
A7LGM2 Putative transcriptional regulator [Salmonella enterica su...  57.8    6e-14 
B2CY47 CsgD [Escherichia coli]                                        57.8    6e-14 
Q9AP49 Positive regulator AgmR [Pseudomonas putida]                   57.8    6e-14 


>Q8X5M9 Transcriptional response regulator [Escherichia coli O157:H7]
Length=200

 Score = 394 bits (1013),  Expect = 6e-146
 Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%)

Query  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60
            MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF
Sbjct  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60

Query  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120
            CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
Sbjct  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120

Query  121  IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180
            IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
Sbjct  121  IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180

Query  181  YRRLEVKNRTQAAMMLNISS  200
            YRRLEVKNRTQAAMMLNISS
Sbjct  181  YRRLEVKNRTQAAMMLNISS  200


>A0A0H3PTZ6 Transcriptional regulator, LuxR family [Escherichia 
coli O157:H7 (strain EC869)]
Length=200

 Score = 394 bits (1013),  Expect = 6e-146
 Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%)

Query  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60
            MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF
Sbjct  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60

Query  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120
            CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
Sbjct  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120

Query  121  IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180
            IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
Sbjct  121  IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180

Query  181  YRRLEVKNRTQAAMMLNISS  200
            YRRLEVKNRTQAAMMLNISS
Sbjct  181  YRRLEVKNRTQAAMMLNISS  200


>C3SNM8 Transcriptional regulator [Escherichia coli]
Length=200

 Score = 394 bits (1013),  Expect = 6e-146
 Identities = 200/200 (100%), Positives = 200/200 (100%), Gaps = 0/200 (0%)

Query  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60
            MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF
Sbjct  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60

Query  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120
            CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
Sbjct  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120

Query  121  IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180
            IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
Sbjct  121  IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180

Query  181  YRRLEVKNRTQAAMMLNISS  200
            YRRLEVKNRTQAAMMLNISS
Sbjct  181  YRRLEVKNRTQAAMMLNISS  200


>A0A0K9TGP8 LuxR family regulatory protein [Escherichia coli M114]
Length=200

 Score = 393 bits (1010),  Expect = 2e-145
 Identities = 199/200 (99%), Positives = 200/200 (100%), Gaps = 0/200 (0%)

Query  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60
            MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF
Sbjct  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60

Query  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120
            CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
Sbjct  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120

Query  121  IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180
            +MFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
Sbjct  121  MMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180

Query  181  YRRLEVKNRTQAAMMLNISS  200
            YRRLEVKNRTQAAMMLNISS
Sbjct  181  YRRLEVKNRTQAAMMLNISS  200


>E1IT68 Transcriptional regulator, LuxR family [Escherichia coli 
MS 145-7]
Length=200

 Score = 393 bits (1010),  Expect = 2e-145
 Identities = 199/200 (99%), Positives = 200/200 (100%), Gaps = 0/200 (0%)

Query  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60
            MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF
Sbjct  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60

Query  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120
            CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
Sbjct  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120

Query  121  IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180
            +MFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
Sbjct  121  MMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180

Query  181  YRRLEVKNRTQAAMMLNISS  200
            YRRLEVKNRTQAAMMLNISS
Sbjct  181  YRRLEVKNRTQAAMMLNISS  200


>F4TLV8 Putative HTH-type transcriptional regulator YhjB [Escherichia 
coli M718]
Length=200

 Score = 393 bits (1010),  Expect = 2e-145
 Identities = 199/200 (99%), Positives = 200/200 (100%), Gaps = 0/200 (0%)

Query  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60
            MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF
Sbjct  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60

Query  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120
            CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
Sbjct  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120

Query  121  IMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180
            +MFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
Sbjct  121  MMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL  180

Query  181  YRRLEVKNRTQAAMMLNISS  200
            YRRLEVKNRTQAAMMLNISS
Sbjct  181  YRRLEVKNRTQAAMMLNISS  200


>Q9KHT3 Putative response regulator [Pseudomonas putida]
Length=216

 Score = 73.2 bits (178),  Expect = 1e-19
 Identities = 46/154 (30%), Positives = 80/154 (52%), Gaps = 6/154 (4%)

Query  49   LVMLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVE  108
            LV+LD +  G + +  L     Q+P++ V++ +       + +   F     +P+ ST+E
Sbjct  54   LVLLDLNMPGAYGFSGLVLLRGQYPQIPVVMVSAQEEAAVVVKSREFGASGFIPKSSTLE  113

Query  109  TFALAVNSAAMGIMFLPG------DWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEI  162
                AV     G ++ P       D     +   + L SL+ +Q  +LTM+  G  NK+I
Sbjct  114  VIQDAVRKVLDGEVWWPPQAFERVDVSAEAKAASEGLASLTPQQFRVLTMVCEGLLNKQI  173

Query  163  GRALNISTGTVKAHLESLYRRLEVKNRTQAAMML  196
               LN+S  T+KAH+ +++R+L V+ RTQAA++L
Sbjct  174  AYELNVSEATIKAHVTAIFRKLGVRTRTQAALLL  207


>A8DA11 Response regulator [Anabaena sp. (strain L31)]
Length=228

 Score = 69.7 bits (169),  Expect = 3e-18
 Identities = 56/216 (26%), Positives = 101/216 (47%), Gaps = 29/216 (13%)

Query  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDG--  58
            ++I++ +   +F  G+ + LQQ      I  A   +     ++  P  +V+LD    G  
Sbjct  6    VKILLVEDDELFRLGLLVRLQQETGLEIIAEAEDGETALDFIKQQPVDVVLLDVGLPGLG  65

Query  59   --EFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNS  116
              E C  + Q    Q P++ +LI  +   K  + ++I         +    E   LA+ S
Sbjct  66   GIETCKQIKQ----QNPQLPILILTSHSQKPLISKLIEAGAQGYCLKGIVAEKLVLALRS  121

Query  117  AAMGIMFLPGDWRTTPEKDIKD--------------LKS---LSARQREILTMLAAGESN  159
             A G  +    W  T  ++I+               +KS   L+ R+ EIL++LA G++N
Sbjct  122  VAAGASW----WDETATREIRSSIAASQSQPSTENLIKSDHPLTGRELEILSLLAQGKTN  177

Query  160  KEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM  195
            +EI  AL I+ GTV+ H+ ++  +L+V +R QA ++
Sbjct  178  QEIATALYITPGTVRVHVHAILHKLDVSDRHQAVVL  213


>O05210 FlcA [Azospirillum brasilense]
Length=215

 Score = 63.5 bits (153),  Expect = 5e-16
 Identities = 55/208 (26%), Positives = 97/208 (47%), Gaps = 14/208 (7%)

Query  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLE-SYPEALVMLDGDQDGE  59
            M+I++ D   +F  G++  L+Q         A   DE+ Q+   +    +V++D      
Sbjct  1    MKILIGDDHLLFREGLRRLLEQLHGDAIFVEAGTFDEVLQQCRVAGGFDVVLMDLHMPNW  60

Query  60   FCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAM  119
              +  L++     P V V++ +       ++  +       +P+ S+V+    A+N    
Sbjct  61   PGFDGLREVQSLQPGVPVVVISASEALSDIRGALDHGATGYIPKSSSVKVMMGALNLVFS  120

Query  120  GIMFLPGDWRT--TPEKDI-----------KDLKSLSARQREILTMLAAGESNKEIGRAL  166
            G +++P    T  T   D            +    L+ RQRE+L  L AG+SNK+I   L
Sbjct  121  GGIYVPPGALTAATAASDAAPRRGRLDGADRSAYGLTQRQREVLDCLRAGKSNKQIAYEL  180

Query  167  NISTGTVKAHLESLYRRLEVKNRTQAAM  194
             +S GTVK H+ ++++ L VKNRTQA +
Sbjct  181  GLSEGTVKIHVTAIFKSLGVKNRTQAVI  208


>A3KLC2 DNA-binding response regulator [Bacillus amyloliquefaciens]
Length=229

 Score = 62.4 bits (150),  Expect = 1e-15
 Identities = 52/216 (24%), Positives = 99/216 (46%), Gaps = 21/216 (10%)

Query  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60
            + IV+ D   +F  G+K  L        +      DE  + +E Y   +V++D +     
Sbjct  4    VNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVN  63

Query  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120
                 ++ V  +PE KV+I +   ++ ++   +       + ++   +T   AV   A G
Sbjct  64   GVEATKQLVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEG  123

Query  121  IMFLP--------GDWRTT--------PEKDI-----KDLKSLSARQREILTMLAAGESN  159
              +L          ++R          P+ ++     + L  L+ R+ E+L MLA G+SN
Sbjct  124  GSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSN  183

Query  160  KEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM  195
            + IG +L IS  TVK H+ ++ +++ V +RTQA ++
Sbjct  184  RGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVV  219


>Q5QSL6 DNA-binding response regulator [Bacillus licheniformis]
Length=229

 Score = 61.2 bits (147),  Expect = 4e-15
 Identities = 51/216 (24%), Positives = 96/216 (44%), Gaps = 21/216 (10%)

Query  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60
            + IV+ D   +F  G+K  L        +      DE  + +E Y   +V++D +     
Sbjct  4    VNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVN  63

Query  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120
                 ++ V  +PE KV+I +   ++ ++   +       + ++   +T   AV   A G
Sbjct  64   GVEATKQLVDLYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEG  123

Query  121  IMFLP--------GDWRTTPEKDI-------------KDLKSLSARQREILTMLAAGESN  159
              +L          ++R      +             + L  L+ R+ E+L MLA G+SN
Sbjct  124  GSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIRRPLHILTRRECEVLQMLADGKSN  183

Query  160  KEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM  195
            + IG +L IS  TVK H+ ++ +++ V +RTQA ++
Sbjct  184  RGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVV  219


>Q3LHN5 Two component response regulater [Bacillus subtilis]
Length=229

 Score = 60.5 bits (145),  Expect = 7e-15
 Identities = 51/216 (24%), Positives = 98/216 (45%), Gaps = 21/216 (10%)

Query  1    MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF  60
            + IV+ D   +F  G+K  L        +      DE  + +E Y   +V++D +     
Sbjct  4    VNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVN  63

Query  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120
                 ++ V  +PE KV+I +   ++ ++   +       + ++   +T   AV   A G
Sbjct  64   GVEATKQLVELYPESKVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEG  123

Query  121  IMFLP--------GDWRTT--------PEKDI-----KDLKSLSARQREILTMLAAGESN  159
              +L          ++R          P+ ++     + L  L+ R+ E+L MLA G+SN
Sbjct  124  GSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQMLADGKSN  183

Query  160  KEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMM  195
            + IG +L IS   VK H+ ++ +++ V +RTQA ++
Sbjct  184  RGIGESLFISEKAVKNHVSNILQKINVNDRTQAVVV  219


>A0A1B1V557 Putative response regulator [Streptomyces albogriseolus]
Length=220

 Score = 58.2 bits (139),  Expect = 4e-14
 Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 15/137 (11%)

Query  73   PEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMGIMFL--------  124
            P+V+VLI  T   +  +   +    +  + +DS  +    AV +AA G  +L        
Sbjct  74   PDVRVLILTTFGERENVLRALGHGGVGFLLKDSAPDELIHAVRAAAAGNAYLSPAATRHV  133

Query  125  ------PGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLE  178
                  PG   T  ++  + +  LSAR+R++L +L  G SN + GR L++S  TVK ++ 
Sbjct  134  VDALASPGA-TTRADEARQRVDRLSARERDVLALLGEGLSNADAGRRLHMSEATVKTYVS  192

Query  179  SLYRRLEVKNRTQAAMM  195
             +  +L  +NR QAA++
Sbjct  193  RILTKLGCENRVQAALL  209


>A7LGM2 Putative transcriptional regulator [Salmonella enterica 
subsp. enterica serovar Weltevreden]
Length=216

 Score = 57.8 bits (138),  Expect = 6e-14
 Identities = 29/56 (52%), Positives = 38/56 (68%), Gaps = 0/56 (0%)

Query  142  LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLN  197
            L+ R++EIL  L  G SN EI R+L IS  TVK HL +L++++ VKNRTQA    N
Sbjct  156  LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWAN  211


>B2CY47 CsgD [Escherichia coli]
Length=216

 Score = 57.8 bits (138),  Expect = 6e-14
 Identities = 29/56 (52%), Positives = 38/56 (68%), Gaps = 0/56 (0%)

Query  142  LSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLN  197
            L+ R++EIL  L  G SN EI R+L IS  TVK HL +L++++ VKNRTQA    N
Sbjct  156  LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWAN  211


>Q9AP49 Positive regulator AgmR [Pseudomonas putida]
Length=221

 Score = 57.8 bits (138),  Expect = 6e-14
 Identities = 45/206 (22%), Positives = 89/206 (43%), Gaps = 13/206 (6%)

Query  2    QIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEA-LVMLDGDQDGEF  60
            +I++ D   +F   +   +     G  +   +  D      +++ +  L++LD +  G  
Sbjct  3    KILIADDHPLFREAIHNVISDGFQGSEVMETADLDSALALTQAHDDLDLILLDLNMPGMH  62

Query  61   CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG  120
                L     + P   V+I + +  K+ + + I +  +  + + S       A+     G
Sbjct  63   GLNGLITLRNEAPTTPVVIVSAEQEKQIVLQAITYGAVGFITKSSPRSQMIEAIEQILNG  122

Query  121  IMFLPGD------------WRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNI  168
             ++LP D                P    + L++L+ +Q  +L  +  GESNK+I   L+I
Sbjct  123  NVYLPPDIIRAQKSSTSRRHNDAPSFPPEMLQALTRKQLLVLERMTKGESNKQIAYTLDI  182

Query  169  STGTVKAHLESLYRRLEVKNRTQAAM  194
            +  T KAH+ ++ R+L V NR QA +
Sbjct  183  AETTAKAHVSAILRKLNVHNRVQAIL  208



Lambda      K        H        a         alpha
   0.323    0.135    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 452790


  Database: dc88993036a85c0028ad2e70e8ab6963.TrEMBL.fasta
    Posted date:  May 20, 2024  3:22 PM
  Number of letters in database: 3,419
  Number of sequences in database:  16



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40