BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c992b08007a109c8f969b4bf6685f565.SwissProt.fasta
1 sequences; 259 total letters
Query= Z4749
Length=274
Score E
Sequences producing significant alignments: (Bits) Value
P45753 DNA utilization protein HofM [Escherichia coli (strain K12)] 510 0.0
>P45753 DNA utilization protein HofM [Escherichia coli (strain
K12)]
Length=259
Score = 510 bits (1314), Expect = 0.0
Identities = 250/257 (97%), Positives = 253/257 (98%), Gaps = 0/257 (0%)
Query 10 MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLAHDIIKDGRIVDAQRLAKTLL 69
MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPL +DIIKDGRIVDAQ+LAKTLL
Sbjct 1 MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQQLAKTLL 60
Query 70 PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFD 129
PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFD
Sbjct 61 PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFD 120
Query 130 YSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAW 189
YSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAW
Sbjct 121 YSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAW 180
Query 190 RDNEQWLWATRYRWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL 249
RDNEQWLWATRY WGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL
Sbjct 181 RDNEQWLWATRYSWGRKLAVGMTSAKELAAALSVDPESVAICGEGGFDPWEAVSVRQPPL 240
Query 250 PPPGGDFAIALGWRLGR 266
PPPGGDFAIALG LG+
Sbjct 241 PPPGGDFAIALGLALGK 257
Lambda K H a alpha
0.323 0.135 0.435 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 58266
Database: c992b08007a109c8f969b4bf6685f565.SwissProt.fasta
Posted date: May 20, 2024 12:58 PM
Number of letters in database: 259
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40