BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: a17d21893372ce2105d5c00d4ef95367.SwissProt.fasta
15 sequences; 4,606 total letters
Query= Z4413
Length=311
Score E
Sequences producing significant alignments: (Bits) Value
Q8XBK9 HTH-type transcriptional activator TtdR [Escherichia coli ... 623 0.0
P45463 HTH-type transcriptional activator TtdR [Escherichia coli ... 621 0.0
Q0TD46 HTH-type transcriptional activator TtdR [Escherichia coli ... 619 0.0
Q1R6S1 HTH-type transcriptional activator TtdR [Escherichia coli ... 617 0.0
Q8FDH0 HTH-type transcriptional activator TtdR [Escherichia coli ... 617 0.0
P76250 HTH-type transcriptional regulator DmlR [Escherichia coli ... 280 4e-97
P52689 Probable HTH-type transcriptional regulator LtrA [Klebsiel... 128 2e-38
P30864 Uncharacterized HTH-type transcriptional regulator YafC [E... 125 2e-37
Q01610 Putative transcriptional regulator [Pseudomonas aeruginosa... 119 9e-35
P43011 Uncharacterized HTH-type transcriptional regulator HI_1364... 108 3e-31
A0A0H2ZDG9 HTH-type transcriptional repressor PA14_22550 [Pseudom... 108 6e-31
P67662 HTH-type transcriptional activator AaeR [Escherichia coli ... 106 4e-30
P37459 Probable HTH-type transcriptional regulator SinR [Salmonel... 90.1 4e-24
P77333 HTH-type transcriptional regulator PgrR [Escherichia coli ... 88.2 2e-23
P77744 HTH-type transcriptional regulator AbgR [Escherichia coli ... 68.2 2e-16
>Q8XBK9 HTH-type transcriptional activator TtdR [Escherichia coli
O157:H7]
Length=310
Score = 623 bits (1606), Expect = 0.0
Identities = 309/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)
Query 1 MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV 60
MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct 1 MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV 60
Query 61 ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR 120
ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct 61 ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR 120
Query 121 NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP 180
NYPELQVYFELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct 121 NYPELQVYFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP 180
Query 181 QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG 240
QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct 181 QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG 240
Query 241 IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL 300
IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct 241 IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL 300
Query 301 GKPDEGYQVM 310
GKPDEGYQVM
Sbjct 301 GKPDEGYQVM 310
>P45463 HTH-type transcriptional activator TtdR [Escherichia coli
(strain K12)]
Length=310
Score = 621 bits (1601), Expect = 0.0
Identities = 308/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)
Query 1 MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV 60
MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct 1 MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV 60
Query 61 ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR 120
ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct 61 ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR 120
Query 121 NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP 180
NYPELQV+FELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct 121 NYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP 180
Query 181 QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG 240
QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct 181 QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG 240
Query 241 IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL 300
IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct 241 IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL 300
Query 301 GKPDEGYQVM 310
GKPDEGYQVM
Sbjct 301 GKPDEGYQVM 310
>Q0TD46 HTH-type transcriptional activator TtdR [Escherichia coli
O6:K15:H31 (strain 536 / UPEC)]
Length=310
Score = 619 bits (1597), Expect = 0.0
Identities = 307/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)
Query 1 MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV 60
MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct 1 MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV 60
Query 61 ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR 120
ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct 61 ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR 120
Query 121 NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP 180
NYPELQV+FELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct 121 NYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP 180
Query 181 QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG 240
QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct 181 QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG 240
Query 241 IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL 300
IMLRSEWDVLPFLESGKLV+VLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct 241 IMLRSEWDVLPFLESGKLVRVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL 300
Query 301 GKPDEGYQVM 310
GKPDEGYQVM
Sbjct 301 GKPDEGYQVM 310
>Q1R6S1 HTH-type transcriptional activator TtdR [Escherichia coli
(strain UTI89 / UPEC)]
Length=310
Score = 617 bits (1591), Expect = 0.0
Identities = 306/310 (99%), Positives = 308/310 (99%), Gaps = 0/310 (0%)
Query 1 MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV 60
MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct 1 MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV 60
Query 61 ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR 120
ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct 61 ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR 120
Query 121 NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP 180
NYPELQV+FELFDRQIDLVQDN DLDIRIND IPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct 121 NYPELQVHFELFDRQIDLVQDNIDLDIRINDAIPDYYIAHLLTKNKRILCAAPEYLQKYP 180
Query 181 QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG 240
QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct 181 QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG 240
Query 241 IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL 300
IMLRSEWDVLPFLESGKLV+VLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct 241 IMLRSEWDVLPFLESGKLVRVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL 300
Query 301 GKPDEGYQVM 310
GKPDEGYQVM
Sbjct 301 GKPDEGYQVM 310
>Q8FDH0 HTH-type transcriptional activator TtdR [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=310
Score = 617 bits (1591), Expect = 0.0
Identities = 306/310 (99%), Positives = 308/310 (99%), Gaps = 0/310 (0%)
Query 1 MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV 60
MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct 1 MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV 60
Query 61 ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR 120
ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct 61 ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR 120
Query 121 NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP 180
NYPELQV+FELFDRQIDLVQDN DLDIRIND IPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct 121 NYPELQVHFELFDRQIDLVQDNIDLDIRINDAIPDYYIAHLLTKNKRILCAAPEYLQKYP 180
Query 181 QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG 240
QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct 181 QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG 240
Query 241 IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL 300
IMLRSEWDVLPFLESGKLV+VLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct 241 IMLRSEWDVLPFLESGKLVRVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL 300
Query 301 GKPDEGYQVM 310
GKPDEGYQVM
Sbjct 301 GKPDEGYQVM 310
>P76250 HTH-type transcriptional regulator DmlR [Escherichia coli
(strain K12)]
Length=307
Score = 280 bits (715), Expect = 4e-97
Identities = 143/291 (49%), Positives = 196/291 (67%), Gaps = 0/291 (0%)
Query 2 LNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVA 61
+N+ PL DL+V + + F+A A LG +PAFV+KRI +LE TL LL+R+ R V
Sbjct 1 MNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVT 60
Query 62 LTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRN 121
+TE G+R YE A IL +++D+++ ++ P+GM+RI SFGFGR +APA+ L +
Sbjct 61 ITEEGERIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALLALAKA 120
Query 122 YPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQ 181
YP+L++ F++ DR +DLV + DLDIRI D+I IA L N RILCA+PE++ ++
Sbjct 121 YPQLELRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARKLATNYRILCASPEFIAQHGA 180
Query 182 PQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGI 241
P+ L +LS CLV KERD G+W+L N + ++KV+G LSSN GEIV QW L+G+GI
Sbjct 181 PKHLTDLSALPCLVIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGI 240
Query 242 MLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFL 292
LRS WDV + SG LVQVLPEY Q AN+WAVY L S K+R+ VEFL
Sbjct 241 ALRSWWDVSENIASGHLVQVLPEYYQPANVWAVYVSRLATSAKVRITVEFL 291
>P52689 Probable HTH-type transcriptional regulator LtrA [Klebsiella
pneumoniae]
Length=309
Score = 128 bits (322), Expect = 2e-38
Identities = 79/291 (27%), Positives = 141/291 (48%), Gaps = 5/291 (2%)
Query 7 LAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESG 66
L DL + V+IV GSFSA A G TP+ V++ + LE + LL R+ R + L+++G
Sbjct 5 LLPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRLSDAG 64
Query 67 QRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQ 126
+ Y+HA ++L ++ +D +T +G + + GR I P + YP++
Sbjct 65 ETIYQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRYPQVD 124
Query 127 VYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQ 186
V L DR +D + D DL +RI D L + ++CA YLQ++ P + Q
Sbjct 125 VCLRLEDRPLDFIDDGIDLALRITDTPSPGLHGKPLMPIRHVICATEAYLQQHGTPYTPQ 184
Query 187 ELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE 246
+L H C+ E W+ + ++V+ G ++N + L + GI
Sbjct 185 DLRAHSCISLGETP-ADARWKFRREGKTETVQTYGRYAANHTAVRLDAVRQHLGIGSLPL 243
Query 247 WDVLPFLESGKLVQVLPEY----AQSANIWAVYREPLYRSMKLRVCVEFLA 293
+ L +G +VQVLPE+ + S ++W ++ + ++R +++L+
Sbjct 244 FTAREALANGDIVQVLPEWEFISSYSGDLWLLWAGDKHMPARMRAMIDYLS 294
>P30864 Uncharacterized HTH-type transcriptional regulator YafC
[Escherichia coli (strain K12)]
Length=304
Score = 125 bits (315), Expect = 2e-37
Identities = 81/288 (28%), Positives = 146/288 (51%), Gaps = 4/288 (1%)
Query 8 AKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQ 67
+++L + V +V SGSFS AA LGQ + V++ ++ LE L +LLNR+ R ++LTE G+
Sbjct 5 SEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLTEEGE 64
Query 68 RCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQV 127
R + IL + ++ + + P G++RI + + P I YPE+ +
Sbjct 65 RYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYPEVTL 124
Query 128 YFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQE 187
+ I+L++ D+ IR A L + R + A+P+Y+ +Y +P+++ +
Sbjct 125 SLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLFNSYRKIIASPDYISRYGKPETIDD 184
Query 188 LSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEW 247
L +H CL E + W + + + +V LSSNSGE + Q L G GI S++
Sbjct 185 LKQHICLGFTE-PASLNTWPIAR-SDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLSDY 242
Query 248 DVLPFLESGKLVQVLPEYAQSANI--WAVYREPLYRSMKLRVCVEFLA 293
+ + G+LV+++ + + AVY S ++R ++FL+
Sbjct 243 MIDKEIARGELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLS 290
Score = 20.8 bits (42), Expect = 0.55
Identities = 12/31 (39%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query 2 LNSWPLAKDLQVLVEIVHSGSFSAAAATLGQ 32
LN+WP+A+ L E+ + G S + TL Q
Sbjct 199 LNTWPIARSDGQLHEVKY-GLSSNSGETLKQ 228
>Q01610 Putative transcriptional regulator [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=306
Score = 119 bits (297), Expect = 9e-35
Identities = 77/261 (30%), Positives = 133/261 (51%), Gaps = 8/261 (3%)
Query 10 DLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRC 69
DL V + G+F+ AAA LG T + +++ I LE L LL R+ R V+ T +G+R
Sbjct 8 DLLSFVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSPTAAGERL 67
Query 70 YEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYF 129
+ + +D+++ ++ +P G +RI C R+ + P +T L+ YP+++V F
Sbjct 68 LNAIGNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEYPDIKVEF 127
Query 130 ELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRI-LCAAPEYLQKYPQPQSLQEL 188
++ D+V D D +R+ D I IA + R+ + AAP Y +P+P+S ++L
Sbjct 128 DINYGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPKPRSPRDL 187
Query 189 SRHDCLVTKERDMTHG----IWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLR 244
H+C+ + M G W+ +V+V G L N+ ++ AL G GI
Sbjct 188 VDHNCINMR---MQSGGGLYAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLGIAWL 244
Query 245 SEWDVLPFLESGKLVQVLPEY 265
E + P +E G+L++VL +
Sbjct 245 PEEEFAPHIEEGRLLRVLENW 265
>P43011 Uncharacterized HTH-type transcriptional regulator HI_1364
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd)]
Length=288
Score = 108 bits (271), Expect = 3e-31
Identities = 77/278 (28%), Positives = 128/278 (46%), Gaps = 4/278 (1%)
Query 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70
+ + +++ + SF+ AA + A +K + LE L T LL R+ R + TE+G Y
Sbjct 7 ISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEAGMMYY 66
Query 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE 130
+ IL +TQ+ + +G + I FG IAP + M +P L + E
Sbjct 67 QRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHLHIEVE 126
Query 131 LFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELSR 190
D++IDL+ + DL +RI ++ + A+P YL+ PQ+ +L
Sbjct 127 FNDKKIDLLSEGYDLALRIGYMEDSSLVSRKIGTTTVHFAASPNYLETNGIPQTPDDLEH 186
Query 191 HDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEWDVL 250
H+ L+ K M W + + K+ + SNSG +L A G GI ++ +
Sbjct 187 HNGLLYKNA-MNQVNWVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIANLPKFILG 245
Query 251 PFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRV 287
E G+L+++LPEY Q I VY P R + ++V
Sbjct 246 RAFEKGELIEILPEYKQQKLEIHVVY--PNRRHLPIKV 281
>A0A0H2ZDG9 HTH-type transcriptional repressor PA14_22550 [Pseudomonas
aeruginosa (strain UCBPP-PA14)]
Length=317
Score = 108 bits (271), Expect = 6e-31
Identities = 80/286 (28%), Positives = 134/286 (47%), Gaps = 6/286 (2%)
Query 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70
+ V++V +GSF+ AA LG A V++R+ LE L LLNR+ R ++LT G +
Sbjct 7 MATFVKVVDAGSFTRAADALGLPKARVSQRVSDLEKHLGVRLLNRTTRALSLTHDGSAYF 66
Query 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE 130
+ +L Q L + P G +R+ R IAP + + YP +Q+
Sbjct 67 DKCQVLLQQIDELEATLRGGTATPIGRLRVDSLITIARWVIAPRLHDFQARYPRIQLRLS 126
Query 131 LFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQK---YPQPQSLQE 187
DR +L++D D IR IA L + L A+PEYL P L +
Sbjct 127 SSDRISNLLEDGIDCTIRGGALKDSSMIARHLCDIQMGLYASPEYLASIGGVDSPNDLSQ 186
Query 188 LSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEW 247
R +ER+ +WEL +G E+ V+ + + ++ + + G GI + +
Sbjct 187 FRRLSWFSGRERNPF--MWELESGPERFVVQSGDGMQFDEPDVAISACMAGSGICPGAPF 244
Query 248 DVLPFLESGKLVQVLPE-YAQSANIWAVYREPLYRSMKLRVCVEFL 292
V F+ +GKLV VLP+ + +A + +Y + S+++R V ++
Sbjct 245 AVAGFVRAGKLVPVLPQWHFSAAPVHVIYPGSRHLSVRVRCFVNWV 290
>P67662 HTH-type transcriptional activator AaeR [Escherichia coli
(strain K12)]
Length=309
Score = 106 bits (265), Expect = 4e-30
Identities = 76/285 (27%), Positives = 130/285 (46%), Gaps = 2/285 (1%)
Query 9 KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68
K + V ++V GSF+AAA L + + +++ + LE+ L LLNRS R + LTE+G+
Sbjct 5 KRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEAGRI 64
Query 69 CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVY 128
Y+ +L + Q + + + P G +RIGCS ++ +A ++++ YP L V
Sbjct 65 YYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGLSVN 124
Query 129 FELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQEL 188
DL+ D D+ IR+ + L ++CAA YL +Y P+ +L
Sbjct 125 LVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADL 184
Query 189 SRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEWD 248
S H L R G + + G +N +++W G GI
Sbjct 185 SSHSWLEYSVRPDNEFELIAPEGISTRLIP-QGRFVTNDPMTLVRWLTAGAGIAYVPLMW 243
Query 249 VLPFLESGKLVQVLPEYAQSAN-IWAVYREPLYRSMKLRVCVEFL 292
V+ + G+L +LP Y ++A+Y E +K++V + L
Sbjct 244 VINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINSL 288
>P37459 Probable HTH-type transcriptional regulator SinR [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=315
Score = 90.1 bits (222), Expect = 4e-24
Identities = 79/301 (26%), Positives = 139/301 (46%), Gaps = 29/301 (10%)
Query 9 KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR 68
+D + +++ G+ S AA L + + V+K + LEN++ TLL R + + LT +GQ
Sbjct 11 RDWMIFIKVAEVGNLSRAARELDISISAVSKSLSRLENSIEVTLLRRDSHHLELTGAGQT 70
Query 69 CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAIT----------EL 118
Y I + +Q L+D++ P+ +IR F APAI E
Sbjct 71 AYASMKRITSSFQSLLDEL----RNPDKIIRGSIKFS------APAIVCEFLANKWIWEF 120
Query 119 MRNYPELQVYFELFDRQIDLVQDNRDLD---IRINDEIPDYYIAHLLTKNKRILCAAPEY 175
+YP+ ++Y + +R D + + D + + + ++ K +LCA+P+Y
Sbjct 121 TASYPDTKIYLDSRERS-DFFSKSLEFDELVFKSGIIESEDLVYRKISPLKLVLCASPKY 179
Query 176 LQKYPQPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVK--VSGHLSSNSGEIVLQ 233
++KY + +L H +V G L E ++ V+ HLSSN+ VL
Sbjct 180 IRKYGRISHPGDLENH-IIVGLHNHGLSGPLTLFRQDESYTISGAVNVHLSSNNLLSVLN 238
Query 234 WALEGKGI-MLRSEWDVLPFLESGKLVQVLPEY-AQSANIWAVYREPLYRSMKLRVCVEF 291
LEGKGI ++ W +L++ +L +LPE+ I+ V+R Y S + + F
Sbjct 239 LVLEGKGINLMTPAWLATKYLKNNELEIILPEWRVPDLPIYLVWRHRQYYSPLFQRFLSF 298
Query 292 L 292
+
Sbjct 299 I 299
Score = 17.7 bits (34), Expect = 5.2
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query 126 QVYFELFDRQIDLVQD---NRDLDIRINDE 152
Q Y LF R + ++D NR +ND+
Sbjct 286 QYYSPLFQRFLSFIEDKWNNRPQIDFLNDD 315
>P77333 HTH-type transcriptional regulator PgrR [Escherichia coli
(strain K12)]
Length=299
Score = 88.2 bits (217), Expect = 2e-23
Identities = 63/262 (24%), Positives = 123/262 (47%), Gaps = 10/262 (4%)
Query 10 DLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRC 69
DL V + SF+ AAA L + +++ ++ +E L LL R+ R V TE+G
Sbjct 8 DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAG--- 64
Query 70 YEHALEILTQYQRLVDD----VTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPEL 125
EH L +L +D ++ ++ RP G IRI ++ + PA+ ++++PE+
Sbjct 65 -EHLLSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEI 123
Query 126 QVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKN-KRILCAAPEYLQKYPQPQS 184
+ + D+V + D +R+ E+ IA + + + +P+Y + P S
Sbjct 124 DIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTS 183
Query 185 LQELSRHDCL-VTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIML 243
+ +L H + + T W L G + V++ G L N+ ++++ A++G G+
Sbjct 184 VSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAY 243
Query 244 RSEWDVLPFLESGKLVQVLPEY 265
V ++ KL++VL ++
Sbjct 244 LPYDQVERAIKEKKLIRVLDKF 265
>P77744 HTH-type transcriptional regulator AbgR [Escherichia coli
(strain K12)]
Length=302
Score = 68.2 bits (165), Expect = 2e-16
Identities = 46/167 (28%), Positives = 81/167 (49%), Gaps = 8/167 (5%)
Query 11 LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY 70
++ VE+ GS A+ L + ++K IQ LE LA L R ++GV LT++G+ Y
Sbjct 10 IRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVTLTDAGESFY 69
Query 71 EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE 130
+HA IL + + +D+ Q + + G I IG RS + I+ + +P+++V
Sbjct 70 QHASLILEELRAAQEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQHPQVKVRI- 128
Query 131 LFDRQIDLVQDNR--DLDIRINDEIP-----DYYIAHLLTKNKRILC 170
+ + + ++ + R +LD IN ++ LL K I C
Sbjct 129 MEGQLVSMINELRQGELDFTINTYYQGPYDHEFTFEKLLEKQFAIFC 175
Lambda K H a alpha
0.322 0.137 0.414 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1045646
Database: a17d21893372ce2105d5c00d4ef95367.SwissProt.fasta
Posted date: May 31, 2024 4:56 AM
Number of letters in database: 4,606
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
