Comparative Genomics

Z4413 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: ec3676267a7b70dfce3b292b9cd3797b.TrEMBL.fasta
           19 sequences; 6,004 total letters



Query= Z4413

Length=311
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A891SQK9 Transcriptional activator TtdR [Escherichia coli O157:H-]  623     0.0  
A0A0H3PRV9 HTH-type transcriptional activator TtdR [Escherichia c...  623     0.0  
C3SU22 Putative transcriptional regulator LYSR-type [Escherichia ...  623     0.0  
A0A1X3KY59 HTH-type transcriptional activator TtdR [Escherichia c...  621     0.0  
A0A837AJ64 HTH-type transcriptional regulator DmlR [Escherichia c...  621     0.0  
S1ECG4 HTH-type transcriptional activator ttdR [Escherichia coli ...  621     0.0  
U9ZPR2 LysR substrate binding domain protein [Escherichia coli 90...  621     0.0  
A0A8S7E9P5 DNA-binding transcriptional activator TtdR [Escherichi...  620     0.0  
A0A7Z1D2X8 Transcriptional activator TtdR [Shigella sonnei]           619     0.0  
A0A8B6X9F3 LysR family transcriptional regulator [Derxia gummosa ...  248     2e-84
Q5YB94 Putative LysR-type regulator [Sphingomonas sp. TFD44]          158     1e-49
Q9X3Q9 PltR [Pseudomonas fluorescens]                                 146     9e-45
Q6TLK2 PltR [Pseudomonas sp. M18]                                     138     1e-41
O67999 GstR [Bradyrhizobium japonicum]                                135     1e-40
A0A0N9QZF9 AdeL [Acinetobacter baumannii]                             133     1e-39
C6FI39 PnpR [Pseudomonas putida]                                      130     4e-39
F6KSK4 LysR-type regulator [Serratia plymuthica RVH1]                 129     1e-38
G9M5T4 LysR family transcriptional regulator [Ralstonia pickettii]    128     4e-38
T2D2H8 Putative LysR family transcriptional regulator [mixed cult...  127     5e-38


>A0A891SQK9 Transcriptional activator TtdR [Escherichia coli O157:H-]
Length=310

 Score = 623 bits (1606),  Expect = 0.0
 Identities = 309/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)

Query  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60
            MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60

Query  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120
            ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120

Query  121  NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180
            NYPELQVYFELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct  121  NYPELQVYFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180

Query  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240
            QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240

Query  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300
            IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300

Query  301  GKPDEGYQVM  310
            GKPDEGYQVM
Sbjct  301  GKPDEGYQVM  310


>A0A0H3PRV9 HTH-type transcriptional activator TtdR [Escherichia 
coli O157:H7 (strain EC869)]
Length=310

 Score = 623 bits (1606),  Expect = 0.0
 Identities = 309/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)

Query  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60
            MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60

Query  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120
            ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120

Query  121  NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180
            NYPELQVYFELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct  121  NYPELQVYFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180

Query  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240
            QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240

Query  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300
            IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300

Query  301  GKPDEGYQVM  310
            GKPDEGYQVM
Sbjct  301  GKPDEGYQVM  310


>C3SU22 Putative transcriptional regulator LYSR-type [Escherichia 
coli]
Length=310

 Score = 623 bits (1606),  Expect = 0.0
 Identities = 309/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)

Query  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60
            MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60

Query  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120
            ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120

Query  121  NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180
            NYPELQVYFELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct  121  NYPELQVYFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180

Query  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240
            QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240

Query  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300
            IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300

Query  301  GKPDEGYQVM  310
            GKPDEGYQVM
Sbjct  301  GKPDEGYQVM  310


>A0A1X3KY59 HTH-type transcriptional activator TtdR [Escherichia 
coli H420]
Length=310

 Score = 621 bits (1601),  Expect = 0.0
 Identities = 308/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)

Query  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60
            MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60

Query  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120
            ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120

Query  121  NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180
            NYPELQV+FELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct  121  NYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180

Query  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240
            QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240

Query  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300
            IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300

Query  301  GKPDEGYQVM  310
            GKPDEGYQVM
Sbjct  301  GKPDEGYQVM  310


>A0A837AJ64 HTH-type transcriptional regulator DmlR [Escherichia 
coli 2-460-02_S1_C1]
Length=310

 Score = 621 bits (1601),  Expect = 0.0
 Identities = 308/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)

Query  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60
            MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60

Query  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120
            ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120

Query  121  NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180
            NYPELQV+FELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct  121  NYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180

Query  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240
            QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240

Query  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300
            IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300

Query  301  GKPDEGYQVM  310
            GKPDEGYQVM
Sbjct  301  GKPDEGYQVM  310


>S1ECG4 HTH-type transcriptional activator ttdR [Escherichia coli 
KTE73]
Length=310

 Score = 621 bits (1601),  Expect = 0.0
 Identities = 308/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)

Query  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60
            MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60

Query  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120
            ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120

Query  121  NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180
            NYPELQV+FELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct  121  NYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180

Query  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240
            QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240

Query  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300
            IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300

Query  301  GKPDEGYQVM  310
            GKPDEGYQVM
Sbjct  301  GKPDEGYQVM  310


>U9ZPR2 LysR substrate binding domain protein [Escherichia coli 
909945-2]
Length=310

 Score = 621 bits (1601),  Expect = 0.0
 Identities = 308/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)

Query  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60
            MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60

Query  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120
            ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120

Query  121  NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180
            NYPELQV+FELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct  121  NYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180

Query  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240
            QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240

Query  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300
            IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300

Query  301  GKPDEGYQVM  310
            GKPDEGYQVM
Sbjct  301  GKPDEGYQVM  310


>A0A8S7E9P5 DNA-binding transcriptional activator TtdR [Escherichia 
coli]
Length=310

 Score = 620 bits (1598),  Expect = 0.0
 Identities = 307/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)

Query  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60
            MLNSWPLAKDLQVLVEIVHSGSF+AAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct  1    MLNSWPLAKDLQVLVEIVHSGSFTAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60

Query  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120
            ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120

Query  121  NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180
            NYPELQV+FELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct  121  NYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180

Query  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240
            QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240

Query  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300
            IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300

Query  301  GKPDEGYQVM  310
            GKPDEGYQVM
Sbjct  301  GKPDEGYQVM  310


>A0A7Z1D2X8 Transcriptional activator TtdR [Shigella sonnei]
Length=310

 Score = 619 bits (1597),  Expect = 0.0
 Identities = 307/310 (99%), Positives = 309/310 (99%), Gaps = 0/310 (0%)

Query  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60
            MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV
Sbjct  1    MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGV  60

Query  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120
            ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR
Sbjct  61   ALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMR  120

Query  121  NYPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180
            NYPELQV+FELFDRQIDLVQDN DLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP
Sbjct  121  NYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYP  180

Query  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240
            QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG
Sbjct  181  QPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240

Query  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300
            IMLRSEWDVLPFLESGKLV+VLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
Sbjct  241  IMLRSEWDVLPFLESGKLVRVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL  300

Query  301  GKPDEGYQVM  310
            GKPDEGYQVM
Sbjct  301  GKPDEGYQVM  310


>A0A8B6X9F3 LysR family transcriptional regulator [Derxia gummosa 
DSM 723]
Length=312

 Score = 248 bits (632),  Expect = 2e-84
 Identities = 125/294 (43%), Positives = 182/294 (62%), Gaps = 1/294 (0%)

Query  2    LNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVA  61
            +N  P  +DL+V V +     FSAAA  LG +PA+V+KRI +LE  L   L NR+ R VA
Sbjct  1    MNKAPGNEDLRVFVTVARLAGFSAAAQALGVSPAYVSKRIGLLEQQLGARLFNRTPRSVA  60

Query  62   LTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRN  121
            LT  G+R  + A  +L     L+ D+   +  P G +RI  S GFGR  +APA+  L   
Sbjct  61   LTGQGERVLQSAERMLADLDGLLLDLATTRRVPRGELRISTSLGFGRHFVAPALARLTDR  120

Query  122  YPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQ  181
            +P+L V  E+ DR +D+  +  DLD+R+ DEI  +++A  L  N+R+LCAAP Y+ ++ Q
Sbjct  121  HPQLTVRLEVVDRVVDVGAEGFDLDVRVGDEIAPHHVARRLAANRRVLCAAPGYVARHGQ  180

Query  182  PQSLQELSRHDCLVTKERDMTHGIWEL-GNGQEKKSVKVSGHLSSNSGEIVLQWALEGKG  240
            P +   L+ H C+  +ERD+    W L     +   VKV G L++N GEI + WAL+G+G
Sbjct  181  PDTPAALAAHACIAIRERDLPFREWRLRSTAGDDALVKVDGPLATNHGEIAVGWALDGRG  240

Query  241  IMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAA  294
            I+LRS WDV P + +G+L+ +LP++ Q AN+WAVY   L  + KLR CV+FLA+
Sbjct  241  IVLRSLWDVAPLIATGELLHLLPDWTQEANVWAVYPARLGNTAKLRACVDFLAS  294


>Q5YB94 Putative LysR-type regulator [Sphingomonas sp. TFD44]
Length=299

 Score = 158 bits (399),  Expect = 1e-49
 Identities = 94/290 (32%), Positives = 147/290 (51%), Gaps = 6/290 (2%)

Query  7    LAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESG  66
            +  + ++   +V + S + A   LG +P+ V+KR+  LE  L T L+NR+ R ++LTE G
Sbjct  2    IGNEYRLFAAVVDAASLAGAGRALGISPSMVSKRLAALEERLGTRLVNRTTRRLSLTERG  61

Query  67   QRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQ  126
             R ++    IL   +     V+     P G +R+     FGR H+ P +   +  +P+++
Sbjct  62   ARFHDEVTAILASMREAERRVSDRTDHPSGPLRLSLPTSFGRLHVVPHLKAFLDTWPDIE  121

Query  127  VYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQ  186
            +  ++ D   DL  +  D+ IRI   I     AH L  ++R+LCAAP YL+ Y  P+S+ 
Sbjct  122  LTLDMSDGLRDLFAERIDVAIRITAAITSGLTAHHLAPSRRLLCAAPSYLEAYGAPRSIA  181

Query  187  ELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE  246
            +L  H  L    +      W+L      + V+    +++NS E V + AL G GI LRS 
Sbjct  182  DLGHHRLLAATGQLP----WQLDGPSGPRIVRGRSAVNTNSSEAVRELALAGVGIALRSI  237

Query  247  WDVLPFLESGKLVQVLPEYAQS--ANIWAVYREPLYRSMKLRVCVEFLAA  294
            WDV   L   +L+ VLP Y  S    I+AVY      +   R C+EFL A
Sbjct  238  WDVGTELRERELIPVLPAYQGSLETGIYAVYPAGAPPTAAARACIEFLEA  287


>Q9X3Q9 PltR [Pseudomonas fluorescens]
Length=343

 Score = 146 bits (369),  Expect = 9e-45
 Identities = 83/262 (32%), Positives = 138/262 (53%), Gaps = 0/262 (0%)

Query  7    LAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESG  66
            +  D+ + + +  +GSFS     LG  P+ V +RI  LE  L T L NRS + + LTE+G
Sbjct  6    VVNDIDLYISVTKTGSFSETGRLLGIPPSSVMRRINSLEKELETCLFNRSTKCLILTETG  65

Query  67   QRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQ  126
                EHA  I         +V +      G++++     FGR H+AP ++ ++ ++P L+
Sbjct  66   LLFLEHAKNISRCIGHARSEVKEHTASTLGVLKVSAPVAFGRRHVAPLLSRILNHHPGLK  125

Query  127  VYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQ  186
            + F L D+ +D   DN D+ I++        I   L   +R+LCA+PEY++++  PQ+L+
Sbjct  126  IEFSLNDKALDPSIDNVDICIKLGILPDSNLIPTKLADMRRVLCASPEYIRQHGCPQTLE  185

Query  187  ELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSE  246
            +L +H CL+          W+       K +  S  LS NS E+++  AL+G GI+    
Sbjct  186  DLYQHACLIHSTCSNFSLTWQFKVDGLLKKLMPSSRLSVNSSELLVDGALQGIGIIHAPT  245

Query  247  WDVLPFLESGKLVQVLPEYAQS  268
            W V   + SG+LV +L EY ++
Sbjct  246  WLVHEQIASGQLVSLLDEYCEA  267


>Q6TLK2 PltR [Pseudomonas sp. M18]
Length=343

 Score = 138 bits (347),  Expect = 1e-41
 Identities = 83/259 (32%), Positives = 133/259 (51%), Gaps = 2/259 (1%)

Query  10   DLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRC  69
            D  + + +  +GSFS          + V +RI  LE  L T L+NRS + + LTE+G   
Sbjct  9    DFDLYISVALTGSFSETGRVFEMPASSVMRRINNLEEKLETRLINRSTKKLVLTETGALF  68

Query  70   YEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYF  129
             +HA +I     +  +++ +  +   G +R+     FGR HIAP ++ L++  P L++ F
Sbjct  69   LKHARKIPRNINQARNEIKEHTSSAVGTLRVSAPVAFGRRHIAPLVSTLLKKNPGLKLDF  128

Query  130  ELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS  189
             L DR  D V +  DL IR+        I   L   +R+LCA+PEYL K+  P++ +EL 
Sbjct  129  SLNDRIADPVGEKLDLCIRLGILPDSSLICSKLAGLRRVLCASPEYLLKHGLPRTPEELE  188

Query  190  RHDCLVTKERDMTHGIWELGNGQEKKSVKVS--GHLSSNSGEIVLQWALEGKGIMLRSEW  247
            RH CL           W+  +    + +++S    LS NS E++++ AL+G GI+    W
Sbjct  189  RHTCLQHNGCSNASLSWQFSSADITRRIRISPVSRLSVNSAELLVEGALQGLGIIHAPTW  248

Query  248  DVLPFLESGKLVQVLPEYA  266
             V   + SG+LV  L  +A
Sbjct  249  LVHEEVASGRLVTFLDRHA  267


>O67999 GstR [Bradyrhizobium japonicum]
Length=342

 Score = 135 bits (340),  Expect = 1e-40
 Identities = 91/285 (32%), Positives = 147/285 (52%), Gaps = 5/285 (2%)

Query  11   LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY  70
            +   V  V SGS SAAA +L  +   V+++I  LE    T LL R+ R +ALT+ G+  Y
Sbjct  48   MATFVRAVDSGSLSAAARSLPSSLTAVSRQISALEQHFGTRLLVRTTRQLALTDDGRMLY  107

Query  71   EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE  130
            E A  IL + + + + +   +  P G +R+      GR  IAP + + +   P L V   
Sbjct  108  ERAKSILGEVKEIEEALAGSRREPSGRLRVSAPTLMGRLLIAPLLGDFLHACPSLSVDLL  167

Query  131  LFDRQIDLVQDNRDLDIRINDEIPD-YYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELS  189
            L DR ++L++++  L +R+   IPD   +   L + + I CA+P YL +  +PQS  +L 
Sbjct  168  LVDRNVNLIEEDVHLALRVG-RIPDSQLVTRKLAEVQMIHCASPGYLARRGEPQSPSDLP  226

Query  190  RHDCLVTKERDMTHGIWELGNGQEKKS-VKVSGHLSSNSGEIVLQWALEGKGIMLRSEWD  248
            RHDCLV  +       W  G   +  S ++++G L  NS + +   A  G GI+    W 
Sbjct  227  RHDCLVFSDAPGA-ATWRFGRDAKGGSRIRIAGRLWVNSLDALASAAENGAGIVRVPSWQ  285

Query  249  VLPFLESGKLVQVLPEYAQS-ANIWAVYREPLYRSMKLRVCVEFL  292
            V   L  G+L ++L E+  + A + A+Y+     S K+R  ++FL
Sbjct  286  VERQLAEGRLRRLLREHEPAPAPLHALYQPSRLGSAKIRAFIDFL  330


>A0A0N9QZF9 AdeL [Acinetobacter baumannii]
Length=337

 Score = 133 bits (334),  Expect = 1e-39
 Identities = 89/286 (31%), Positives = 144/286 (50%), Gaps = 3/286 (1%)

Query  11   LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY  70
            ++V  ++V + SFS AA +LG   A VT  IQ LE  L   LLNR+ R ++LT  G   Y
Sbjct  1    MRVFNKVVETNSFSLAADSLGLPRASVTTTIQALEKHLQVRLLNRTTRKISLTPDGAVYY  60

Query  71   EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE  130
            +    IL     +       +  P G +RI      GR  + P + +    YP++ +   
Sbjct  61   DRTARILADVADIESSFHDAERGPRGQLRIDVPVSIGRLILIPRLRDFHARYPDIDLVIG  120

Query  131  LFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELSR  190
            L DR +DLV +  D  IR+ +      IA  +   +    A+P YL+KY +P S+++L +
Sbjct  121  LNDRPVDLVGEAVDCAIRVGELKDSSLIARRIGTFQCATAASPIYLEKYGEPTSIEDLQK  180

Query  191  HDCLV--TKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEWD  248
            +   +     R   +  W+       KSV V G +S N G+  +  AL+G GI+    + 
Sbjct  181  NHKAIHFFSSRTGRNFDWDFVVDDLIKSVSVRGRVSVNDGDAYIDLALQGFGIIQGPRYM  240

Query  249  VLPFLESGKLVQVLPEYAQS-ANIWAVYREPLYRSMKLRVCVEFLA  293
            +   LESG L +VLP++  +   I AVY +  + S+K++V V+++A
Sbjct  241  LTNHLESGLLKEVLPQWTPAPMPISAVYLQNRHLSLKVKVFVDWVA  286


>C6FI39 PnpR [Pseudomonas putida]
Length=309

 Score = 130 bits (328),  Expect = 4e-39
 Identities = 76/283 (27%), Positives = 147/283 (52%), Gaps = 2/283 (1%)

Query  11   LQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRCY  70
            ++  V +  +G+F+ AA  LG T + ++ RIQ LE  +   L +RS R V L++ G+  Y
Sbjct  7    VEAFVRVAETGNFAKAALQLGVTRSVISHRIQQLEQFINAPLFHRSTRHVRLSDVGETYY  66

Query  71   EHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVYFE  130
            +   +++  +  L + + +++++P G +RI    GF   H    + E  R YP++++   
Sbjct  67   KECSDMVANFNSLTEHMRELRSKPTGKLRIQMLPGFAIGHFGRMMAEFNRLYPDIEIDVV  126

Query  131  LFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELSR  190
            + DR +D +++  D+  ++   + +  I   L   +R+ C +P+Y  ++  PQ   +L  
Sbjct  127  VNDRVVDPIEEGFDVAFQMFPPLSETLIERKLFSVRRLFCMSPQYAAEFGVPQHPDDLLN  186

Query  191  HDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEWDVL  250
            H  +       +   W   +G E+ ++ + GH+ SNS  ++  +A  G  I+        
Sbjct  187  HK-IAMYAGYPSRNRWVFTHGGEQLNLSLPGHMRSNSVHLLRDYAETGVCIVCLPTLVAS  245

Query  251  PFLESGKLVQVLPEYAQSA-NIWAVYREPLYRSMKLRVCVEFL  292
              L +G+L+ VLPEY+ S+ N  AV+     R++K+R  +EFL
Sbjct  246  DDLLAGRLIPVLPEYSLSSFNFSAVFPATQRRALKVRALIEFL  288


>F6KSK4 LysR-type regulator [Serratia plymuthica RVH1]
Length=319

 Score = 129 bits (325),  Expect = 1e-38
 Identities = 88/302 (29%), Positives = 143/302 (47%), Gaps = 6/302 (2%)

Query  2    LNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVA  61
            +N     + L + +E+   GSFSAAA  LG  P+ + + I  LE+ L  TL  RS RG+ 
Sbjct  20   MNDARYVEHLPIFLEVALQGSFSAAARKLGMVPSSLVRHIDALESALDATLFIRSTRGLM  79

Query  62   LTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRN  121
            LT++G+     A  +L+    +  ++  +   P+G +RI C   FG+++I P +  L   
Sbjct  80   LTDAGEMLKARAAALLSDITDIRAELASLSDVPQGTLRISCLPTFGKTYILPLLPTLAER  139

Query  122  YPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQ  181
            YP+L V  +L +RQ D  Q+  D  IRI ++      A  +   + ++CA+P+Y+ +Y  
Sbjct  140  YPQLFVDLDLTERQTDPTQELLDAAIRIGEQKDSGLYASRIATQRWVMCASPDYIARYGC  199

Query  182  PQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGI  241
            P  L  L  H  +    +       ++ +GQ     + S  L  N      Q AL G GI
Sbjct  200  PGDLNALPEHRLIARYNKQQPACWTQILSGQLLN--RCSMVLRCNDFTAQRQAALLGLGI  257

Query  242  MLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRLG  301
                 W V P +++G+L QVL +  Q      + R     S +L      L    +Q +G
Sbjct  258  TFLPNWVVGPDIQAGRLHQVLEDPRQEQQGIYLLRPVAKISARLSAFTRLL----KQSIG  313

Query  302  KP  303
            +P
Sbjct  314  QP  315


>G9M5T4 LysR family transcriptional regulator [Ralstonia pickettii]
Length=312

 Score = 128 bits (321),  Expect = 4e-38
 Identities = 79/260 (30%), Positives = 124/260 (48%), Gaps = 2/260 (1%)

Query  2    LNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVA  61
            + S   A++L + VE+  SGSFSA A   G   + V ++I  LE  L   L  RS R + 
Sbjct  1    MESARFAENLAIFVEVAQSGSFSAVARQRGMVASSVARQIDTLERELGVPLFTRSTRALV  60

Query  62   LTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRN  121
             T++G   +  A  IL +     D VT ++    G++R+ C   FGR H+ P +  L   
Sbjct  61   RTDAGDLLFARATRILHELSDTRDAVTALEQGVSGLVRVACLPAFGRRHVVPHLGALYAQ  120

Query  122  YPELQVYFELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQ  181
            YP L V   L +R +D V +  D+ IR+  +     IA  ++  + I+CA P YL ++ +
Sbjct  121  YPRLTVELALTERVVDPVVERFDVVIRVGQQADSSLIARCISDQRYIICATPAYLAQHGR  180

Query  182  PQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGI  241
            P    EL RH  +         G  EL       S + +  L  +  +      L+G GI
Sbjct  181  PVHADELRRHRLIDRGHSTSMRGWRELLT--PAHSAQATFALECDDCDARRLSVLQGLGI  238

Query  242  MLRSEWDVLPFLESGKLVQV  261
             L  +W V P + +G+LV++
Sbjct  239  ALMPDWSVGPDIGAGRLVEL  258


>T2D2H8 Putative LysR family transcriptional regulator [mixed 
culture bacterium NP30]
Length=298

 Score = 127 bits (320),  Expect = 5e-38
 Identities = 83/285 (29%), Positives = 145/285 (51%), Gaps = 2/285 (1%)

Query  9    KDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQR  68
            +++Q    +V +GSF  AA  L  +   V++ +  LE  L   LL+R+ R ++LTE G  
Sbjct  5    QEMQTFCAVVDAGSFVKAADALHMSKPAVSRYVADLEARLGVRLLHRTTRRLSLTEEGAV  64

Query  69   CYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQVY  128
                  E+L+  +    +V+       G++R+     FG   +AP        +P++++ 
Sbjct  65   FNTRCRELLSGLEEAEAEVSSRSGAARGLLRVNVPVSFGIQTLAPLWDAFHELHPQVRLN  124

Query  129  FELFDRQIDLVQDNRDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQEL  188
             EL DR +D+V++  DL IRI        I+  L + + +LCA+PEYL KY +P +   L
Sbjct  125  VELSDRVVDVVEEGYDLAIRIATLSSSSLISKRLARTRIVLCASPEYLNKYGEPSNPANL  184

Query  189  SRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEWD  248
            + H  ++     +    WE    +   +VK+   + +N+G+     AL  +GI+L+  + 
Sbjct  185  AEHK-VIGYSYWLDADAWEFEGPEGPVNVKIHPWMFTNNGDTCRAVALAHQGIILQPTFL  243

Query  249  VLPFLESGKLVQVLPEYAQ-SANIWAVYREPLYRSMKLRVCVEFL  292
            V   L +G+LV++LP+Y      I+AVY    + + K+R  V FL
Sbjct  244  VGDDLAAGRLVEILPQYRSIELGIYAVYPTRKHVAPKVRALVNFL  288



Lambda      K        H        a         alpha
   0.322    0.137    0.414    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1349304


  Database: ec3676267a7b70dfce3b292b9cd3797b.TrEMBL.fasta
    Posted date:  May 20, 2024  6:39 AM
  Number of letters in database: 6,004
  Number of sequences in database:  19



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40