BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 0203b3be0c1bb7fb9f338a7a38a28fc5.SwissProt.fasta
20 sequences; 6,652 total letters
Query= Z3823
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
P77269 ABC transporter periplasmic-binding protein YphF [Escheric... 628 0.0
P0AEE7 D-galactose/methyl-galactoside binding periplasmic protein... 76.3 7e-19
P0AEE6 D-galactose/methyl-galactoside binding periplasmic protein... 76.3 7e-19
P0AEE5 D-galactose/methyl-galactoside binding periplasmic protein... 76.3 7e-19
P36949 Ribose import binding protein RbsB [Bacillus subtilis (str... 75.5 1e-18
P23905 D-galactose/methyl-galactoside binding periplasmic protein... 72.8 1e-17
P23925 D-galactose/methyl-galactoside binding periplasmic protein... 72.4 1e-17
A0QYB5 D-threitol-binding protein [Mycolicibacterium smegmatis (s... 67.8 6e-16
B1G898 D-apiose import binding protein [Paraburkholderia graminis... 62.0 4e-14
Q5PJE4 Autoinducer 2-binding protein LsrB [Salmonella paratyphi A... 62.0 5e-14
Q57HE0 Autoinducer 2-binding protein LsrB [Salmonella choleraesui... 62.0 5e-14
Q8ZKQ1 Autoinducer 2-binding protein LsrB [Salmonella typhimurium... 62.0 5e-14
Q8Z2X8 Autoinducer 2-binding protein LsrB [Salmonella typhi] 61.2 8e-14
A9MZG4 Autoinducer 2-binding protein LsrB [Salmonella paratyphi B... 61.2 8e-14
P45047 D-xylose-binding periplasmic protein [Haemophilus influenz... 59.7 3e-13
P37387 D-xylose-binding periplasmic protein [Escherichia coli (st... 56.6 3e-12
P76142 Autoinducer 2-binding protein LsrB [Escherichia coli (stra... 55.1 9e-12
A0QYB3 Xylitol-binding protein [Mycolicibacterium smegmatis (stra... 50.8 2e-10
Q2PBM5 Autoinducer 2-binding protein LsrB [Photorhabdus temperata] 49.3 7e-10
P49308 Putative rhizopine-binding protein [Rhizobium meliloti] 46.2 6e-09
>P77269 ABC transporter periplasmic-binding protein YphF [Escherichia
coli (strain K12)]
Length=327
Score = 628 bits (1619), Expect = 0.0
Identities = 325/327 (99%), Positives = 326/327 (99%), Gaps = 0/327 (0%)
Query 1 MPKKMRTTRNLLLMATLLGSALFARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60
MP KMRTTRNLLLMATLLGSALFARAA+KEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV
Sbjct 1 MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSV 60
Query 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120
QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT
Sbjct 61 QVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNT 120
Query 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180
CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK
Sbjct 121 CINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRK 180
Query 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240
GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR
Sbjct 181 GFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVR 240
Query 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300
NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK
Sbjct 241 NQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEK 300
Query 301 VIQVPIDLYTKTEDGKQWLATHVDGLP 327
VIQVPIDLYTKTEDGKQWLATHVDGLP
Sbjct 301 VIQVPIDLYTKTEDGKQWLATHVDGLP 327
>P0AEE7 D-galactose/methyl-galactoside binding periplasmic protein
MglB [Shigella flexneri]
Length=332
Score = 76.3 bits (186), Expect = 7e-19
Identities = 78/319 (24%), Positives = 148/319 (46%), Gaps = 26/319 (8%)
Query 9 RNLLLMATLLGSALF---ARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLI 65
+ +L ++ ++ S LF A AAD + + IY + + VR+ ++ AK ++ VQL+
Sbjct 3 KKVLTLSAVMASMLFGAAAHAADTRIGV-TIYKYDDNFMSVVRKAIEQDAK-AAPDVQLL 60
Query 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125
++Q D SK++ +D L+A+ V A+ ++ V + + +A +PV+ +N ++K
Sbjct 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120
Query 126 GVDKYVSAYLVG-DPLEFGKKLGNAAADYFIA------NKIDQPKIAVINCEAFEVCVQR 178
+D Y AY VG D E G G+ A ++ A NK Q + ++ E +
Sbjct 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180
Query 179 RKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKL--IISTPDLN---AIMGESGGATL 233
R + + + G + Q T + +K+ +S P+ N ++ + +
Sbjct 181 RTTY-VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239
Query 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV-DISGKKMGNAVFAQTLKVI 292
GAV+A++ N++ I VFG D E +++ + V+ D + + A+ L
Sbjct 240 GAVEALKAHNKS-SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298
Query 293 NKQADG------EKVIQVP 305
ADG KV++VP
Sbjct 299 KGAADGTNWKIDNKVVRVP 317
>P0AEE6 D-galactose/methyl-galactoside binding periplasmic protein
MglB [Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC)]
Length=332
Score = 76.3 bits (186), Expect = 7e-19
Identities = 78/319 (24%), Positives = 148/319 (46%), Gaps = 26/319 (8%)
Query 9 RNLLLMATLLGSALF---ARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLI 65
+ +L ++ ++ S LF A AAD + + IY + + VR+ ++ AK ++ VQL+
Sbjct 3 KKVLTLSAVMASMLFGAAAHAADTRIGV-TIYKYDDNFMSVVRKAIEQDAK-AAPDVQLL 60
Query 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125
++Q D SK++ +D L+A+ V A+ ++ V + + +A +PV+ +N ++K
Sbjct 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120
Query 126 GVDKYVSAYLVG-DPLEFGKKLGNAAADYFIA------NKIDQPKIAVINCEAFEVCVQR 178
+D Y AY VG D E G G+ A ++ A NK Q + ++ E +
Sbjct 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180
Query 179 RKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKL--IISTPDLN---AIMGESGGATL 233
R + + + G + Q T + +K+ +S P+ N ++ + +
Sbjct 181 RTTY-VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239
Query 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV-DISGKKMGNAVFAQTLKVI 292
GAV+A++ N++ I VFG D E +++ + V+ D + + A+ L
Sbjct 240 GAVEALKAHNKS-SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298
Query 293 NKQADG------EKVIQVP 305
ADG KV++VP
Sbjct 299 KGAADGTNWKIDNKVVRVP 317
>P0AEE5 D-galactose/methyl-galactoside binding periplasmic protein
MglB [Escherichia coli (strain K12)]
Length=332
Score = 76.3 bits (186), Expect = 7e-19
Identities = 78/319 (24%), Positives = 148/319 (46%), Gaps = 26/319 (8%)
Query 9 RNLLLMATLLGSALF---ARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLI 65
+ +L ++ ++ S LF A AAD + + IY + + VR+ ++ AK ++ VQL+
Sbjct 3 KKVLTLSAVMASMLFGAAAHAADTRIGV-TIYKYDDNFMSVVRKAIEQDAK-AAPDVQLL 60
Query 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125
++Q D SK++ +D L+A+ V A+ ++ V + + +A +PV+ +N ++K
Sbjct 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120
Query 126 GVDKYVSAYLVG-DPLEFGKKLGNAAADYFIA------NKIDQPKIAVINCEAFEVCVQR 178
+D Y AY VG D E G G+ A ++ A NK Q + ++ E +
Sbjct 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180
Query 179 RKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKL--IISTPDLN---AIMGESGGATL 233
R + + + G + Q T + +K+ +S P+ N ++ + +
Sbjct 181 RTTY-VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239
Query 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV-DISGKKMGNAVFAQTLKVI 292
GAV+A++ N++ I VFG D E +++ + V+ D + + A+ L
Sbjct 240 GAVEALKAHNKS-SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298
Query 293 NKQADG------EKVIQVP 305
ADG KV++VP
Sbjct 299 KGAADGTNWKIDNKVVRVP 317
>P36949 Ribose import binding protein RbsB [Bacillus subtilis
(strain 168)]
Length=305
Score = 75.5 bits (184), Expect = 1e-18
Identities = 70/288 (24%), Positives = 136/288 (47%), Gaps = 24/288 (8%)
Query 29 KEMTIG-AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARN 87
KE TIG ++ ++ +++G++ AK ++V +++ AQ D SK+++ V+ L+ +
Sbjct 36 KEFTIGLSVSTLNNPFFVSLKKGIEKEAKKRGMKVIIVD--AQNDSSKQTSDVEDLIQQG 93
Query 88 VDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLG 147
VDA++++ + S V A+ G+PV+ + Q V+ V++ V G
Sbjct 94 VDALLINPTDSSAISTAVESANAVGVPVVTIDRSAEQGKVETLVASDNV---------KG 144
Query 148 NAAADYFIANKIDQ-PKIAVI-NCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTV-L 204
A FIA+K+ + K+A + +R GF + ++ Q+V Q
Sbjct 145 GEMAAAFIADKLGKGAKVAELEGVPGASATRERGSGFHNIADQKL---QVVTKQSADFDR 201
Query 205 DKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGK-IAVFGSDMTTEIAQEL 263
K ++V E L+ PD+ A+ + LGA++A+ N +GK I V G D + +
Sbjct 202 TKGLTVMENLLQGHPDIQAVFAHNDEMALGALEAI---NSSGKDILVIGFDGNKDALASI 258
Query 264 ENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTK 311
++ + L A V + +G +++ + +K I P+ L T+
Sbjct 259 KDRK-LSATVAQQPELIGKLATEAADDILHGK-KVQKTISAPLKLETQ 304
>P23905 D-galactose/methyl-galactoside binding periplasmic protein
MglB [Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720)]
Length=332
Score = 72.8 bits (177), Expect = 1e-17
Identities = 77/319 (24%), Positives = 146/319 (46%), Gaps = 26/319 (8%)
Query 9 RNLLLMATLLGSALF---ARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLI 65
+ +L ++ ++ S LF A AAD + + IY + + VR+ ++ K S+ VQL+
Sbjct 3 KKVLTLSAVMASLLFGAHAHAADTRIGV-TIYKYDDNFMSVVRKAIEKDGK-SAPDVQLL 60
Query 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125
++Q D SK++ +D L+A+ V A+ ++ V + + +A +PV+ +N ++K
Sbjct 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120
Query 126 GVDKYVSAYLVG-DPLEFGKKLGNAAADYFIA------NKIDQPKIAVINCEAFEVCVQR 178
+D Y AY VG D E G G+ A ++ A NK + + ++ E +
Sbjct 121 ALDSYDKAYYVGTDSKESGVIQGDLIAKHWQANQGWDLNKDGKIQYVLLKGEPGHPDAEA 180
Query 179 RKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKL--IISTPDLN---AIMGESGGATL 233
R + V + G Q T + +K+ +S P+ N ++ + +
Sbjct 181 RTTY-VVKELNDKGIQTEQLALDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239
Query 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV-DISGKKMGNAVFAQTLKVI 292
GAV+A++ N++ I VFG D E +++ + V+ D + + A+ L
Sbjct 240 GAVEALKAHNKS-SIPVFGVDALPEALALVKSGAMAGTVLNDANNQAKATFDLAKNLAEG 298
Query 293 NKQADG------EKVIQVP 305
ADG K+++VP
Sbjct 299 KGAADGTSWKIENKIVRVP 317
>P23925 D-galactose/methyl-galactoside binding periplasmic protein
MglB [Citrobacter freundii]
Length=332
Score = 72.4 bits (176), Expect = 1e-17
Identities = 74/319 (23%), Positives = 147/319 (46%), Gaps = 26/319 (8%)
Query 9 RNLLLMATLLGSALF---ARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLI 65
+ +L ++ ++ S LF A AAD + + IY + + VR+ ++ AK ++ VQL+
Sbjct 3 KKVLTLSAVMASMLFGAAAHAADTRIGV-TIYKYDDNFMSVVRKAIEKDAK-AAPDVQLL 60
Query 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125
++Q D SK++ +D L+A+ V A+ ++ V + + +A +P++ +N ++K
Sbjct 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPIVFFNKEPSRK 120
Query 126 GVDKYVSAYLVG-DPLEFGKKLGNAAADYFIA------NKIDQPKIAVINCEAFEVCVQR 178
+D Y AY VG D E G G+ A ++ A NK + + ++ E +
Sbjct 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANPNWDLNKDGKIQFVLLKGEPGHPDAEA 180
Query 179 RKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKL--IISTPDLN---AIMGESGGATL 233
R + + + G + Q T + +K+ +S P+ N ++ + +
Sbjct 181 RTTY-VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWMSGPNANKIEVVIANNDAMAM 239
Query 234 GAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVV-DISGKKMGNAVFAQTLKVI 292
GAV+A++ N+ + VFG D E +++ + V+ D + + A+ L
Sbjct 240 GAVEALKAHNKT-SVPVFGVDALPEALALVKSGAMAGTVLNDANNQAKATFDLAKNLADG 298
Query 293 NKQADG------EKVIQVP 305
ADG K+++VP
Sbjct 299 KGAADGTNWKIENKIVRVP 317
>A0QYB5 D-threitol-binding protein [Mycolicibacterium smegmatis
(strain ATCC 700084 / mc(2)155)]
Length=349
Score = 67.8 bits (164), Expect = 6e-16
Identities = 72/315 (23%), Positives = 140/315 (44%), Gaps = 32/315 (10%)
Query 4 KMRTTRNLLLMATLLGSALFA-----RAADKEMT-IGAIYLDTQGYYAGVRQGVQDAAKD 57
++ TT + AT LG L A AA+ + T IG D + ++G+ AKD
Sbjct 2 RLGTTAFAIASATALGLGLTACGAGDPAANSDTTRIGVTVYDMSSFITAGKEGMDAYAKD 61
Query 58 SSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVIC 117
++++ LI +A D+S +++ VD+++ + VDAII+ V + + V A GIP++
Sbjct 62 NNIE--LIWNSANLDVSTQASQVDSMINQGVDAIIVVPVQADSLAPQVASAKAKGIPLVP 119
Query 118 YNTCINQKGVDKYVSAYLVGDPLE----FGKKLGNAAADYFIANKIDQPKIAVINCEAFE 173
N ++ K + V V + +LG + + Q
Sbjct 120 VNAALDSKDIAGNVQPDDVAAGAQEMQMMADRLGGKGNIVILQGPLGQSGE--------- 170
Query 174 VCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISVGEKLIIS-TPDLNAIMGESGGA 231
+ R KG E+VL ++ P +++A D+A++ + I P ++ ++ ++
Sbjct 171 --LDRSKGIEQVL-AKYPDIKVLAKDTANWKRDEAVNKMKNWISGFGPQIDGVVAQNDDM 227
Query 232 TLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKV 291
LGA++A++ + G + + G D + +++ + + + G A L V
Sbjct 228 GLGALQALKESGRTG-VPIVGIDGIEDGLNAVKSGDFIG-----TSLQNGTVELAAGLAV 281
Query 292 INKQADGEKVIQVPI 306
N+ A GE V + P+
Sbjct 282 ANRLAKGEPVNKEPV 296
>B1G898 D-apiose import binding protein [Paraburkholderia graminis
(strain ATCC 700544 / DSM 17151 / LMG 18924 / NCIMB 13744
/ C4D1M)]
Length=312
Score = 62.0 bits (149), Expect = 4e-14
Identities = 64/247 (26%), Positives = 109/247 (44%), Gaps = 11/247 (4%)
Query 72 DISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYV 131
D +K+S VDT +AR AIIL S VR+A AGIP + IN G+
Sbjct 68 DANKQSNLVDTAIARGAKAIILDNAGSEASISAVRKAKAAGIPSFLIDREINATGI---A 124
Query 132 SAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEVLKSRVP 191
+ +V + + G +LG A + K + + ++ EA R KG+ +V+ + P
Sbjct 125 VSQIVSNNYQ-GAQLGGRAFVKALGEKGNY--VELVGREADINAGIRSKGYHDVI-DQFP 180
Query 192 GAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAGKIAV 250
++V Q +A V E ++ S PD+ ++ + +GA A++ ++ I V
Sbjct 181 NMKMVERQSANWSQTEAYRVMETILQSHPDVKGVIAGNDTMAMGASAALKAAKRSDVIVV 240
Query 251 FGSDMTTEIAQELENNQVLKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQ-VPIDLY 309
G D + ++ + N + V+ + AV Q K + + G+ Q + L
Sbjct 241 -GFDGSNDVRDAIMRNDIRATVLQPAALAATEAV-EQADKYMKTGSTGKPEKQLINCSLI 298
Query 310 TKTEDGK 316
TK GK
Sbjct 299 TKANAGK 305
>Q5PJE4 Autoinducer 2-binding protein LsrB [Salmonella paratyphi
A (strain ATCC 9150 / SARB42)]
Length=340
Score = 62.0 bits (149), Expect = 5e-14
Identities = 59/246 (24%), Positives = 110/246 (45%), Gaps = 16/246 (7%)
Query 11 LLLMATLLGSALFARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70
LL L +A+ +AA++ I + G++ G Q+A K + V + +
Sbjct 11 LLTAFGLASAAMTVQAAERIAFIPKLV--GVGFFTSGGNGAQEAGKALGIDVTY-DGPTE 67
Query 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY 130
+S + V+ V + DAII+SAVS +G ++RA + G+ ++ +++ + Y
Sbjct 68 PSVSGQVQLVNNFVNQEYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYY 127
Query 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEV---LK 187
++ G P + G L A A+++D+ K V + + + +E +
Sbjct 128 INQ---GTPKQLGSMLVEMA-----AHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKIS 179
Query 188 SRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAG 246
PG +IV Q G K++ E +I + PDL+AI+ A A +A N +
Sbjct 180 QEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-N 238
Query 247 KIAVFG 252
+A+ G
Sbjct 239 NLAIVG 244
>Q57HE0 Autoinducer 2-binding protein LsrB [Salmonella choleraesuis
(strain SC-B67)]
Length=340
Score = 62.0 bits (149), Expect = 5e-14
Identities = 59/246 (24%), Positives = 110/246 (45%), Gaps = 16/246 (7%)
Query 11 LLLMATLLGSALFARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70
LL L +A+ +AA++ I + G++ G Q+A K + V + +
Sbjct 11 LLTAFGLASAAMTVQAAERIAFIPKLV--GVGFFTSGGNGAQEAGKALGIDVTY-DGPTE 67
Query 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY 130
+S + V+ V + DAII+SAVS +G ++RA + G+ ++ +++ + Y
Sbjct 68 PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYY 127
Query 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEV---LK 187
++ G P + G L A A+++D+ K V + + + +E +
Sbjct 128 INQ---GTPKQLGSMLVEMA-----AHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKIS 179
Query 188 SRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAG 246
PG +IV Q G K++ E +I + PDL+AI+ A A +A N +
Sbjct 180 KEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-N 238
Query 247 KIAVFG 252
+A+ G
Sbjct 239 NLAIVG 244
>Q8ZKQ1 Autoinducer 2-binding protein LsrB [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=340
Score = 62.0 bits (149), Expect = 5e-14
Identities = 59/246 (24%), Positives = 110/246 (45%), Gaps = 16/246 (7%)
Query 11 LLLMATLLGSALFARAADKEMTIGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQ 70
LL L +A+ +AA++ I + G++ G Q+A K + V + +
Sbjct 11 LLTAFGLASAAMTVQAAERIAFIPKLV--GVGFFTSGGNGAQEAGKALGIDVTY-DGPTE 67
Query 71 GDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKY 130
+S + V+ V + DAII+SAVS +G ++RA + G+ ++ +++ + Y
Sbjct 68 PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDTKPECRSYY 127
Query 131 VSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVCVQRRKGFEEV---LK 187
++ G P + G L A A+++D+ K V + + + +E +
Sbjct 128 INQ---GTPKQLGSMLVEMA-----AHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKIS 179
Query 188 SRVPGAQIVANQEG-TVLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQAG 246
PG +IV Q G K++ E +I + PDL+AI+ A A +A N +
Sbjct 180 QEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKR-N 238
Query 247 KIAVFG 252
+A+ G
Sbjct 239 NLAIVG 244
>Q8Z2X8 Autoinducer 2-binding protein LsrB [Salmonella typhi]
Length=340
Score = 61.2 bits (147), Expect = 8e-14
Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 14/215 (7%)
Query 42 GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101
G++ G Q+A K + V + + +S + V+ V + DAII+SAVS +G
Sbjct 40 GFFTSGGNGAQEAGKALGIDVTY-DGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 98
Query 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161
++RA + G+ ++ +++ + Y++ G P + G L A A+++D+
Sbjct 99 CPALKRAMQRGVKILTWDSDTKPECRSYYINQ---GTPKQLGSMLVEMA-----AHQVDK 150
Query 162 PKIAVINCEAFEVCVQRRKGFEEV---LKSRVPGAQIVANQEG-TVLDKAISVGEKLIIS 217
K V + + + +E + PG +IV Q G K++ E +I +
Sbjct 151 EKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKA 210
Query 218 TPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFG 252
PDL+AI+ A A +A N + +A+ G
Sbjct 211 YPDLDAIIAPDANALPAAAQAAENLKR-NNLAIVG 244
>A9MZG4 Autoinducer 2-binding protein LsrB [Salmonella paratyphi
B (strain ATCC BAA-1250 / SPB7)]
Length=340
Score = 61.2 bits (147), Expect = 8e-14
Identities = 52/215 (24%), Positives = 97/215 (45%), Gaps = 14/215 (7%)
Query 42 GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101
G++ G Q+A K + V + + +S + V+ V + DAII+SAVS +G
Sbjct 40 GFFTSGGNGAQEAGKALGIDVTY-DGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 98
Query 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161
++RA + G+ ++ +++ + Y++ G P + G L A A+++D+
Sbjct 99 CPALKRAMQRGVKILTWDSDTKPECRSYYINQ---GTPKQLGSMLVEMA-----AHQVDK 150
Query 162 PKIAVINCEAFEVCVQRRKGFEEV---LKSRVPGAQIVANQEG-TVLDKAISVGEKLIIS 217
K V + + + +E + PG +IV Q G K++ E +I +
Sbjct 151 EKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKA 210
Query 218 TPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFG 252
PDL+AI+ A A +A N + +A+ G
Sbjct 211 YPDLDAIIAPDANALPAAAQAAENLKR-NNLAIVG 244
>P45047 D-xylose-binding periplasmic protein [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=332
Score = 59.7 bits (143), Expect = 3e-13
Identities = 53/238 (22%), Positives = 106/238 (45%), Gaps = 17/238 (7%)
Query 56 KDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPV 115
K S+ ++ +A GD S + + ++ ++ +N+D +++ + S + A + GI V
Sbjct 50 KAESMGAKVFVQSANGDDSAQISQIENMINKNIDVLVIIPHNGEVLSNVISEAKKEGIKV 109
Query 116 ICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQPKIAVINCEAFEVC 175
+ Y+ IN +D YVS +K+G A +A K + +
Sbjct 110 LAYDRLINNADLDFYVSF--------DNEKVGELQAKSIVAVKPEGNYFLMGGSPVDNNA 161
Query 176 VQRRKGFEEVLKSRVPGAQI--VANQ--EGTVLDKAISVGEK-LIISTPDLNAIMGESGG 230
RKG +VL + +I V +Q + + +KA+ + E L + +++A++ +
Sbjct 162 KLFRKGQMKVLDPLIASGKIKVVGDQWVDSWLAEKALQIMENALTANKNNVDAVVASNDA 221
Query 231 ATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQ----VLKAVVDISGKKMGNAV 284
GA++A+ Q +GK+A+ G D + + N V K + ++ K AV
Sbjct 222 TAGGAIQALSAQGLSGKVAISGQDADLAAIKRIVNGSQTMTVYKPITKLADKAAEIAV 279
>P37387 D-xylose-binding periplasmic protein [Escherichia coli
(strain K12)]
Length=330
Score = 56.6 bits (135), Expect = 3e-12
Identities = 50/212 (24%), Positives = 99/212 (47%), Gaps = 29/212 (14%)
Query 56 KDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPV 115
K S+ ++ +A G+ + + ++ ++ R VD +++ + S V+ A + GI V
Sbjct 50 KAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKV 109
Query 116 ICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAAD------YFI--ANKIDQPKIAVI 167
+ Y+ IN +D Y+S D + G+ A D YF+ + +D
Sbjct 110 LAYDRMINDADIDFYISF----DNEKVGELQAKALVDIVPQGNYFLMGGSPVDN------ 159
Query 168 NCEAFEVCVQRRKGFEEVLKSRVPGAQI--VANQ--EGTVLDKAISVGEKLIISTPD-LN 222
N + F R G +VLK V +I V +Q +G + + A+ + E + + + ++
Sbjct 160 NAKLF------RAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKID 213
Query 223 AIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254
A++ + GA++A+ Q +GK+A+ G D
Sbjct 214 AVVASNDATAGGAIQALSAQGLSGKVAISGQD 245
>P76142 Autoinducer 2-binding protein LsrB [Escherichia coli (strain
K12)]
Length=340
Score = 55.1 bits (131), Expect = 9e-12
Identities = 50/215 (23%), Positives = 96/215 (45%), Gaps = 14/215 (7%)
Query 42 GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101
G++ G Q A K+ V V + + +S + ++ V + +AII+SAVS +G
Sbjct 40 GFFTSGGNGAQQAGKELGVDVTY-DGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGL 98
Query 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161
++RA + G+ V+ +++ + Y++ G P + G L + A A ++++
Sbjct 99 CPALKRAMQRGVRVLTWDSDTKPECRSYYINQ---GTPAQLGGMLVDMA-----ARQVNK 150
Query 162 PKIAVINCEAFEVCVQRRKGFEEV---LKSRVPGAQIVANQEG-TVLDKAISVGEKLIIS 217
K V + + + +E + PG +IV Q G K++ E ++ +
Sbjct 151 DKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSLQTAEGILKA 210
Query 218 TPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFG 252
DL+AI+ A A +A N K+A+ G
Sbjct 211 YSDLDAIIAPDANALPAAAQAAENLKN-DKVAIVG 244
>A0QYB3 Xylitol-binding protein [Mycolicibacterium smegmatis (strain
ATCC 700084 / mc(2)155)]
Length=349
Score = 50.8 bits (120), Expect = 2e-10
Identities = 50/225 (22%), Positives = 103/225 (46%), Gaps = 15/225 (7%)
Query 33 IGAIYLDTQGYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAII 92
IG D + ++G+ AK ++++ L+ +A D+S +++ VD+L+ + VDAII
Sbjct 37 IGVTVYDMSSFITEGKEGMDTYAKANNIE--LVWNSANNDVSTQASQVDSLINQGVDAII 94
Query 93 LSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAAD 152
+ V + V A GIP++ N + + V D + G + AD
Sbjct 95 VVPVQADSLGPQVASAKSKGIPLLAVNAALETPDLAGNVQP----DDVAAGAQEMQMMAD 150
Query 153 YFIANKIDQPKIAVINCE-AFEVCVQRRKGFEEVLKSRVPGAQIVANQEGT-VLDKAISV 210
+ I ++ + R KG ++VL ++ P +++A D+A++
Sbjct 151 RLGG----KGNIVILQGPLGGSGEINRGKGIDQVL-AKYPDIKVLAKDTANWKRDEAVNK 205
Query 211 GEKLIIS-TPDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSD 254
+ I S P ++ ++ ++ LGA++A++ + G + + G D
Sbjct 206 MKNWISSFGPQIDGVVAQNDDMGLGALQALKEAGRTG-VPIVGID 249
>Q2PBM5 Autoinducer 2-binding protein LsrB [Photorhabdus temperata]
Length=339
Score = 49.3 bits (116), Expect = 7e-10
Identities = 52/230 (23%), Positives = 100/230 (43%), Gaps = 12/230 (5%)
Query 42 GYYAGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGS 101
G++ QG A K V V + + ++ + ++ V + DAI++SAVS G
Sbjct 39 GFFTSGGQGAVAAGKTLGVSVTY-DGPTEPSVAGQVQLINNFVNQGYDAIVVSAVSPEGL 97
Query 102 SRTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKIDQ 161
++RA + G+ ++ +++ + + Y++ G P + G L + A+ K +Q
Sbjct 98 CPALKRAMKRGVKILTWDSDTSPECRSIYINQ---GTPNQLGGMLVDMTANQV---KKEQ 151
Query 162 PKIAVINCEAFEVCVQRR--KGFEEVLKSRVPGAQIVANQEG-TVLDKAISVGEKLIIST 218
K+A V Q + ++ + + PG +IV Q G K++ E ++ +
Sbjct 152 AKVAFFYSSP-TVTDQNQWVXQAKDKIAAEHPGWEIVTTQFGYNDATKSLQTAEGILNAW 210
Query 219 PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQV 268
DL+AI+ A A +A N + +A+ G + LE V
Sbjct 211 SDLDAIIAPDANALPAAAQAAENLKRQ-DVAIVGFSTPNVMRPYLERGTV 259
>P49308 Putative rhizopine-binding protein [Rhizobium meliloti]
Length=309
Score = 46.2 bits (108), Expect = 6e-09
Identities = 66/304 (22%), Positives = 134/304 (44%), Gaps = 22/304 (7%)
Query 18 LGSALFARAADKEMTIGA---IYLDTQGYYAGVRQGVQDAAKD-SSVQVQLIETNAQGDI 73
+ +A+ A TIGA ++ D G +R G++D AK V +Q+ +A D+
Sbjct 8 IAAAVLVSTAAHAETIGASMAVFDDKFGTL--LRNGMEDYAKTLDGVDLQI--EDALNDV 63
Query 74 SKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQKGVDKYVSA 133
+K+ + + +A VDAII+ V + ++ + A++AGIP++ N A
Sbjct 64 AKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNIDTLPEKQA 123
Query 134 YLVGDPLEFGKKLGNAAADYFIANKID-QPKIAVINCE-AFEVCVQRRKGFEEVLKS-RV 190
++ + ++ G I +D + K VI E + + R K +VL + +
Sbjct 124 FVASNEVDSG-----TLQTREICKLLDGKGKAVVIMGELSNQAARMRTKDIHDVLATDQC 178
Query 191 PGAQIVANQEGT-VLDKAISVGEKLIISTPDLNAIMGESGGATLGAVKAVRNQNQA-GKI 248
G +IV Q + + + + + +A++ + +GA++A++ ++ +
Sbjct 179 KGIEIVQEQTANWQRTQGADLMTNWLSAGIEFDAVIANNDEMAIGAIQALKAAGRSMDSV 238
Query 249 AVFGSDMTTEIAQELENNQV-LKAVVDISGKKMGNAVFAQTLKVINKQADGEKVIQVPID 307
+ G D T + + ++ + D G+ G+ A L +K E+ I +P +
Sbjct 239 VIGGIDATDDALAAMAAGELDVSVFQDAVGQGKGSIDAALKL---SKGEAVERKIYIPFE 295
Query 308 LYTK 311
L TK
Sbjct 296 LVTK 299
Lambda K H a alpha
0.317 0.133 0.366 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1593760
Database: 0203b3be0c1bb7fb9f338a7a38a28fc5.SwissProt.fasta
Posted date: Jun 1, 2024 3:42 AM
Number of letters in database: 6,652
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
