BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 9456f2b0f48503f680e27b5653176ba1.SwissProt.fasta
10 sequences; 1,135 total letters
Query= Z3718
Length=136
Score E
Sequences producing significant alignments: (Bits) Value
P63748 Bacterial microcompartment shell protein EutS [Shigella fl... 218 6e-79
P63747 Bacterial microcompartment shell protein EutS [Escherichia... 218 6e-79
P63746 Bacterial microcompartment shell protein EutS [Escherichia... 218 6e-79
Q9ZFV7 Bacterial microcompartment shell protein EutS [Salmonella ... 209 2e-75
Q8Z4T3 Bacterial microcompartment shell protein EutS [Salmonella ... 206 2e-74
P0DUV8 Bacterial microcompartment shell protein PduU [Citrobacter... 126 9e-43
P0A1D2 Bacterial microcompartment shell protein PduU [Salmonella ... 126 9e-43
P0A1D1 Bacterial microcompartment shell protein PduU [Salmonella ... 126 9e-43
Q187M0 Bacterial microcompartment shell protein EutS [Clostridioi... 120 3e-40
A0A0E2IV13 Bacterial microcompartment shell protein CutR [Strepto... 100 1e-32
>P63748 Bacterial microcompartment shell protein EutS [Shigella
flexneri]
Length=111
Score = 218 bits (554), Expect = 6e-79
Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)
Query 25 MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL 84
MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL
Sbjct 1 MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL 60
Query 85 KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 135
KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS
Sbjct 61 KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 111
>P63747 Bacterial microcompartment shell protein EutS [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=111
Score = 218 bits (554), Expect = 6e-79
Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)
Query 25 MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL 84
MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL
Sbjct 1 MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL 60
Query 85 KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 135
KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS
Sbjct 61 KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 111
>P63746 Bacterial microcompartment shell protein EutS [Escherichia
coli (strain K12)]
Length=111
Score = 218 bits (554), Expect = 6e-79
Identities = 111/111 (100%), Positives = 111/111 (100%), Gaps = 0/111 (0%)
Query 25 MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL 84
MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL
Sbjct 1 MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL 60
Query 85 KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 135
KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS
Sbjct 61 KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 111
>Q9ZFV7 Bacterial microcompartment shell protein EutS [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=111
Score = 209 bits (531), Expect = 2e-75
Identities = 105/111 (95%), Positives = 110/111 (99%), Gaps = 0/111 (0%)
Query 25 MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL 84
M+KERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLA+
Sbjct 1 MNKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAM 60
Query 85 KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 135
KAADVHIGFLDRFSGALVIYG+VGAVEEAL QTVSGLGRLLN+TLCE+TKS
Sbjct 61 KAADVHIGFLDRFSGALVIYGTVGAVEEALLQTVSGLGRLLNFTLCELTKS 111
>Q8Z4T3 Bacterial microcompartment shell protein EutS [Salmonella
typhi]
Length=111
Score = 206 bits (524), Expect = 2e-74
Identities = 104/111 (94%), Positives = 109/111 (98%), Gaps = 0/111 (0%)
Query 25 MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLAL 84
M+KERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAI IMTLTPGETAMIAGDLA+
Sbjct 1 MNKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIDIMTLTPGETAMIAGDLAM 60
Query 85 KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 135
KAADVHIGFLDRFSGALVIYG+VGAVEEAL QTVSGLGRLLN+TLCE+TKS
Sbjct 61 KAADVHIGFLDRFSGALVIYGTVGAVEEALLQTVSGLGRLLNFTLCELTKS 111
>P0DUV8 Bacterial microcompartment shell protein PduU [Citrobacter
freundii]
Length=116
Score = 126 bits (317), Expect = 9e-43
Identities = 61/109 (56%), Positives = 86/109 (79%), Gaps = 1/109 (1%)
Query 28 ERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDA-GAIGIMTLTPGETAMIAGDLALKA 86
+R+IQE+VPGKQVTLAHLIA+PG++L KK+G+P++ AIGI+T+TP E ++IA D+A K+
Sbjct 8 DRMIQEYVPGKQVTLAHLIANPGKDLFKKLGLPESVSAIGILTITPSEASIIACDIATKS 67
Query 87 ADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 135
V IGFLDRF+GA+V+ G V AVE AL Q LG ++ +T C +T++
Sbjct 68 GAVEIGFLDRFTGAVVLTGDVSAVEYALKQVTRTLGEMMRFTACPITRT 116
>P0A1D2 Bacterial microcompartment shell protein PduU [Salmonella
typhi]
Length=116
Score = 126 bits (317), Expect = 9e-43
Identities = 62/109 (57%), Positives = 85/109 (78%), Gaps = 1/109 (1%)
Query 28 ERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDA-GAIGIMTLTPGETAMIAGDLALKA 86
+R+IQE+VPGKQVTLAHLIA+PG++L KK+G+ DA AIGI+T+TP E ++IA D+A K+
Sbjct 8 DRMIQEYVPGKQVTLAHLIANPGKDLFKKLGLQDAVSAIGILTITPSEASIIACDIATKS 67
Query 87 ADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 135
V IGFLDRF+GA+V+ G V AVE AL Q LG ++ +T C +T++
Sbjct 68 GAVEIGFLDRFTGAVVLTGDVSAVEYALKQVTRTLGEMMQFTTCSITRT 116
>P0A1D1 Bacterial microcompartment shell protein PduU [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=116
Score = 126 bits (317), Expect = 9e-43
Identities = 62/109 (57%), Positives = 85/109 (78%), Gaps = 1/109 (1%)
Query 28 ERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDA-GAIGIMTLTPGETAMIAGDLALKA 86
+R+IQE+VPGKQVTLAHLIA+PG++L KK+G+ DA AIGI+T+TP E ++IA D+A K+
Sbjct 8 DRMIQEYVPGKQVTLAHLIANPGKDLFKKLGLQDAVSAIGILTITPSEASIIACDIATKS 67
Query 87 ADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 135
V IGFLDRF+GA+V+ G V AVE AL Q LG ++ +T C +T++
Sbjct 68 GAVEIGFLDRFTGAVVLTGDVSAVEYALKQVTRTLGEMMQFTTCSITRT 116
>Q187M0 Bacterial microcompartment shell protein EutS [Clostridioides
difficile (strain 630)]
Length=116
Score = 120 bits (300), Expect = 3e-40
Identities = 57/111 (51%), Positives = 87/111 (78%), Gaps = 2/111 (2%)
Query 27 KERIIQEFVPGKQVTLAHLIAHPGEELAKKIGV--PDAGAIGIMTLTPGETAMIAGDLAL 84
K+R+IQE+VPGKQVTLAH+IA+P E++ KK+G+ AIGI+T+TP E ++IA D+A
Sbjct 6 KQRVIQEYVPGKQVTLAHIIANPNEDIYKKLGLVLDKKDAIGILTITPSEASIIAADVAT 65
Query 85 KAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 135
KA++V +GF+DRFSG++VI G V +VE AL+ + LG +LN++ ++T++
Sbjct 66 KASNVSLGFIDRFSGSVVISGDVSSVESALNDVLEVLGNMLNFSSTKITRT 116
>A0A0E2IV13 Bacterial microcompartment shell protein CutR [Streptococcus
intermedius (strain ATCC 27335 / DSM 20573 / CCUG
32759 / CIP 103248 / JCM 12996 / LMG 17840 / NCTC 11324 / SK54
/ 1877)]
Length=116
Score = 100 bits (250), Expect = 1e-32
Identities = 51/108 (47%), Positives = 76/108 (70%), Gaps = 0/108 (0%)
Query 28 ERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLALKAA 87
+RIIQE VPGKQ+TLAH+IA P E + + +GV GAIG+++LTP ETA+IA D+A KAA
Sbjct 9 DRIIQESVPGKQITLAHVIAAPIEAVYECLGVDHEGAIGVVSLTPNETAIIAADIAGKAA 68
Query 88 DVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS 135
++ I F+DRF+G+++ G + +VE +L + L ++ +TKS
Sbjct 69 NIDICFVDRFTGSVMFSGDIQSVETSLEDILEYFKNSLGFSTVPLTKS 116
Lambda K H a alpha
0.325 0.142 0.407 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 92340
Database: 9456f2b0f48503f680e27b5653176ba1.SwissProt.fasta
Posted date: May 31, 2024 4:16 AM
Number of letters in database: 1,135
Number of sequences in database: 10
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
