BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 871a67538363ce94162946a95c5cc3ec.SwissProt.fasta
4 sequences; 1,011 total letters
Query= Z3493
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
P27294 Protein InaA [Escherichia coli (strain K12)] 444 1e-165
P25741 Lipopolysaccharide core heptose(I) kinase WaaP [Escherichi... 49.7 2e-11
Q9R9D6 Lipopolysaccharide core heptose(I) kinase WaaP [Escherichi... 49.3 3e-11
Q06995 Lipopolysaccharide core heptose(I) kinase WaaP [Salmonella... 47.4 1e-10
>P27294 Protein InaA [Escherichia coli (strain K12)]
Length=216
Score = 444 bits (1142), Expect = 1e-165
Identities = 212/216 (98%), Positives = 215/216 (99%), Gaps = 0/216 (0%)
Query 1 MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYP 60
MAVSAK+DEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYP
Sbjct 1 MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYP 60
Query 61 FGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQH 120
FGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQH
Sbjct 61 FGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQH 120
Query 121 AVTPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRR 180
AV+PYSDEVRQAMLKAVALAFKKMHS+NRQHGCCYVRHIYVKTEG AEAGFLDLEKSRRR
Sbjct 121 AVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRR 180
Query 181 LRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM 216
LRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
Sbjct 181 LRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM 216
>P25741 Lipopolysaccharide core heptose(I) kinase WaaP [Escherichia
coli (strain K12)]
Length=265
Score = 49.7 bits (117), Expect = 2e-11
Identities = 35/121 (29%), Positives = 56/121 (46%), Gaps = 6/121 (5%)
Query 68 REVAVIKELERAGVIVPK-IVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVTPYS 126
RE I L GV K I FGE + ++TED+ IS+ D+ A AV P
Sbjct 76 REWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTISLEDYCADWAVNPPD 135
Query 127 DEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHI-----YVKTEGKAEAGFLDLEKSRRRL 181
V++ ++ VA +KMH+ H CY+ H + E + + +DL +++ R
Sbjct 136 IRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRA 195
Query 182 R 182
+
Sbjct 196 K 196
Score = 15.8 bits (29), Expect = 3.0
Identities = 6/13 (46%), Positives = 7/13 (54%), Gaps = 0/13 (0%)
Query 85 KIVFGEAVKIEGE 97
K F E K+ GE
Sbjct 15 KDAFAEVKKLNGE 27
>Q9R9D6 Lipopolysaccharide core heptose(I) kinase WaaP [Escherichia
coli]
Length=265
Score = 49.3 bits (116), Expect = 3e-11
Identities = 35/121 (29%), Positives = 57/121 (47%), Gaps = 6/121 (5%)
Query 68 REVAVIKELERAGV-IVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVTPYS 126
RE I L GV + + FGE + ++TED+ IS+ D+ A A P
Sbjct 76 REWNAIHRLRDVGVDTMYGVAFGEKGMNPLTRTSFIITEDLTPTISLEDYCADWATNPPD 135
Query 127 DEVRQAMLKAVALAFKKMHSVNRQHGCCYVRH--IYVKTEGKAE---AGFLDLEKSRRRL 181
V++ ++K VA + MH+ H CY+ H +++ GK E +DL +++ R
Sbjct 136 VRVKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRT 195
Query 182 R 182
R
Sbjct 196 R 196
>Q06995 Lipopolysaccharide core heptose(I) kinase WaaP [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=265
Score = 47.4 bits (111), Expect = 1e-10
Identities = 34/119 (29%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query 68 REVAVIKELERAGV-IVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVTPYS 126
RE I L GV + + FGE + ++TED+ IS+ D+ A AV P
Sbjct 76 REWHAIHRLHELGVDTMHGVGFGEKGVNPLTRTSFIITEDLTPTISLEDYCADWAVNPPD 135
Query 127 DEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHI-----YVKTEGKAEAGFLDLEKSRRR 180
+V+ ++K VA +KMH+ H CY+ H + E + +DL +++ R
Sbjct 136 AQVKWMIIKRVATMVRKMHAGGINHRDCYICHFLLHLPFTGREEDLKISVIDLHRAQIR 194
Score = 15.0 bits (27), Expect = 5.4
Identities = 4/12 (33%), Positives = 9/12 (75%), Gaps = 0/12 (0%)
Query 140 AFKKMHSVNRQH 151
A ++ H+++R H
Sbjct 74 ADREWHAIHRLH 85
Lambda K H a alpha
0.325 0.137 0.436 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 163355
Database: 871a67538363ce94162946a95c5cc3ec.SwissProt.fasta
Posted date: May 31, 2024 2:52 PM
Number of letters in database: 1,011
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
