BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: f4134ff5b93679d9290e5f1ff3a7658a.SwissProt.fasta
           2 sequences; 278 total letters



Query= Z3018

Length=138
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P31063 Uncharacterized lipoprotein YedD [Escherichia coli (strain...  279     2e-103
Q06399 Uncharacterized lipoprotein YedD [Salmonella typhimurium (...  243     5e-89 


>P31063 Uncharacterized lipoprotein YedD [Escherichia coli (strain 
K12)]
Length=137

 Score = 279 bits (714),  Expect = 2e-103
 Identities = 136/137 (99%), Positives = 137/137 (100%), Gaps = 0/137 (0%)

Query  1    MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTK  60
            MKKLAIAGAL+LLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTK
Sbjct  1    MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTK  60

Query  61   EGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPT  120
            EGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPT
Sbjct  61   EGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPT  120

Query  121  AECAAALDKAPLPTPLP  137
            AECAAALDKAPLPTPLP
Sbjct  121  AECAAALDKAPLPTPLP  137


>Q06399 Uncharacterized lipoprotein YedD [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=141

 Score = 243 bits (619),  Expect = 5e-89
 Identities = 114/137 (83%), Positives = 128/137 (93%), Gaps = 0/137 (0%)

Query  1    MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTK  60
            MKK+AI GAL++LAGCAEVENYN+VVKTPAP  L GYWQ+KGPQR LVSPEAI SL+VTK
Sbjct  1    MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQRKLVSPEAIASLVVTK  60

Query  61   EGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPT  120
            EGDTLDCRQWQRVIA+PGKLT++SDDLTNVTVKRELYE+ERDGNT+EYDGMT++RV RPT
Sbjct  61   EGDTLDCRQWQRVIALPGKLTMLSDDLTNVTVKRELYEIERDGNTLEYDGMTLQRVARPT  120

Query  121  AECAAALDKAPLPTPLP  137
             ECAAAL+K PLPTPLP
Sbjct  121  PECAAALEKTPLPTPLP  137



Lambda      K        H        a         alpha
   0.320    0.136    0.416    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 28084


  Database: f4134ff5b93679d9290e5f1ff3a7658a.SwissProt.fasta
    Posted date:  May 20, 2024  1:00 PM
  Number of letters in database: 278
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40