BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 43e741035d7808b5262909f10f5c7c48.SwissProt.fasta
           4 sequences; 1,220 total letters



Query= Z2888

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P76278 Inner membrane protein YebZ [Escherichia coli (strain K12)]    581     0.0  
Q9KWM8 Copper resistance protein D [Pseudomonas syringae pv. acti...  104     5e-30
P12377 Copper resistance protein D [Pseudomonas syringae pv. tomato]  95.5    8e-27
Q47455 Copper resistance protein D [Escherichia coli]                 81.3    1e-21


>P76278 Inner membrane protein YebZ [Escherichia coli (strain 
K12)]
Length=290

 Score = 581 bits (1498),  Expect = 0.0
 Identities = 286/290 (99%), Positives = 288/290 (99%), Gaps = 0/290 (0%)

Query  1    MLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLTIRRLLTKRFLRLQQHAAVWSLISATA  60
            MLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLTIRRLL KRFLRLQQHAAVWSLISATA
Sbjct  1    MLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLTIRRLLAKRFLRLQQHAAVWSLISATA  60

Query  61   MLAVQGGLMGTGWKDVFSPNIWQAVLQTQFGGVWLWQIVLALVTLIVALMQPRNMPRLLF  120
            MLAVQGGLMGTGW DVFSPNIWQAVLQTQFGG+WLWQIVLALVTLIVALMQPRNMPRLLF
Sbjct  61   MLAVQGGLMGTGWTDVFSPNIWQAVLQTQFGGIWLWQIVLALVTLIVALMQPRNMPRLLF  120

Query  121  MLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRWR  180
            MLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRWR
Sbjct  121  MLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRWR  180

Query  181  HQAIQALMRFSWCGHFAVIGVLASGVLNALLITGFPPTLTTYWGQLLLLKAILVMIMVVI  240
            HQAIQALMRFSWCGHFAVIGVLASGVLNALLITGFPPTLTTYWGQLLLLKAILVMIMVVI
Sbjct  181  HQAIQALMRFSWCGHFAVIGVLASGVLNALLITGFPPTLTTYWGQLLLLKAILVMIMVVI  240

Query  241  ALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAVVLLIISLLATLEPF  290
            ALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAVVL+IISLLATLEPF
Sbjct  241  ALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAVVLVIISLLATLEPF  290


>Q9KWM8 Copper resistance protein D [Pseudomonas syringae pv. 
actinidiae]
Length=311

 Score = 104 bits (259),  Expect = 5e-30
 Identities = 87/301 (29%), Positives = 142/301 (47%), Gaps = 21/301 (7%)

Query  7    IALRFIHFTSLMLVFGFAMYGAWLAPLTIRR---LLTKRFLRLQQHAAVWSLISATAMLA  63
            IALRF  +T LM++FG A++G +    T R+   +L  + L L   A + +L+S  A+L 
Sbjct  7    IALRFALYTDLMVLFGLALFGLYSLRGTERQSGAVLNFKLL-LTGTAVLGALLSLAALLQ  65

Query  64   VQGGLMG-TGWKDVFSPNIWQAVLQTQFGGVWLWQIVLALVTLIVALMQPRNMPRLLFML  122
            +   + G T W+++F P+I   + +T+ G  W  ++    +  +  L+  R+    L+++
Sbjct  66   MTKAMSGATEWEELF-PHIKMMLAETEVGVSWNVRMAALAMIAVAGLLTSRSPTGSLWVV  124

Query  123  TTAQFILLAGV---GHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRW  179
            T    + LA +   GH  ++EG     H     +HL  A  W G L+     ++  K   
Sbjct  125  TALSGVALATLAWTGHGAMDEGSRRFWHFATDIVHLFAAGGWVGALVAFALLLRAKKVD-  183

Query  180  RHQAIQALMR----FSWCGHFAVIGVLASGVLNALLITG--FPPTLTTYWGQLLLLKAIL  233
             H +++ L R    F   G   V  +L +G++N L I G        T +G LL+ K +L
Sbjct  184  NHGSVKILARTLTGFESAGGVIVATILVTGIVNYLFIVGPQLDSLADTTYGWLLMAKLVL  243

Query  234  VMIMVVIALANRYVLVPRMRQ-----DEDRAAPWFVWMTKLEWAIGAVVLLIISLLATLE  288
               M+ +A  NR+ L P +       D   AA    W    E A   VVL +I+ L TL 
Sbjct  244  FTAMIGLASLNRFRLSPHLEHSIGHGDYTGAAKALRWSMATELAAAVVVLGLIAWLGTLS  303

Query  289  P  289
            P
Sbjct  304  P  304


>P12377 Copper resistance protein D [Pseudomonas syringae pv. 
tomato]
Length=310

 Score = 95.5 bits (236),  Expect = 8e-27
 Identities = 92/301 (31%), Positives = 140/301 (47%), Gaps = 21/301 (7%)

Query  7    IALRFIHFTSLMLVFGFAMYGAWLAPLTIRR---LLTKRFLRLQQHAAVWSLISATAMLA  63
            IA+RF  +T LM++FG A++G +      RR   +L  R L L   A +  L+S  +++ 
Sbjct  7    IAVRFALYTDLMMLFGLALFGLYSLRGAERRSGAVLPFRPL-LSATALIGLLLSVVSIVL  65

Query  64   VQGGLMGTG-WKDVFSPNIWQAVLQTQFGGVWLWQ---IVLALVTLIVALMQPRNMPRLL  119
            +   + G   W +   P+    V QT+ G  WL +   +V A VT+   L  P     ++
Sbjct  66   MAKAMSGASEWLEAV-PHAEMMVTQTELGTAWLIRMAALVGAAVTIAFNLRVPMASLLMV  124

Query  120  FMLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKGRW  179
             +L       LA  GH  ++EG     H +   +HL  +  WFG L+     ++  K   
Sbjct  125  SLLGGVALATLAWTGHGAMDEGSRRFWHFSADILHLWSSGGWFGALVAFALMLRPNKVE-  183

Query  180  RHQAIQALMR----FSWCGHFAVIGVLASGVLNALLITG--FPPTLTTYWGQLLLLKAIL  233
              Q++Q L R    F   G   V  ++ SGV+N L I G      + + +G LLL K  L
Sbjct  184  TLQSVQVLSRTLSGFERAGAVIVAFIVLSGVVNYLFIVGPQVSGVVESTYGVLLLGKLAL  243

Query  234  VMIMVVIALANRYVLVPRM-----RQDEDRAAPWFVWMTKLEWAIGAVVLLIISLLATLE  288
              +MV +A ANR+VL P       R +  RAA    +   LE     +VL +I+ L TL 
Sbjct  244  FGLMVGLASANRFVLSPAFERAVHRGEYARAARSIRYSMALELGAAVLVLGLIAWLGTLS  303

Query  289  P  289
            P
Sbjct  304  P  304


>Q47455 Copper resistance protein D [Escherichia coli]
Length=309

 Score = 81.3 bits (199),  Expect = 1e-21
 Identities = 81/305 (27%), Positives = 139/305 (46%), Gaps = 28/305 (9%)

Query  7    IALRFIHFTSLMLVFG---FAMYGAWLAPLTIRRLLTKRFLRLQQHAAVWSLI-SATAML  62
            I +RF+ +  LM++FG   F +YG  ++ +         F      A V  +I +   ML
Sbjct  7    IVIRFLLYLDLMVIFGLPFFQIYG--ISGVRHETYNLTNFRSFITFAVVTGIILTGINML  64

Query  63   AVQGGLMG-TGWKDVFSPNIWQAVLQTQFGGVWLWQIVLALVTLIVALMQPRNMPRLLFM  121
             V   + G T  +++    I   + +T  G  W+ ++  AL T + AL    N   L  +
Sbjct  65   LVSNAMSGVTDLRELSIHVIEMVIEETDVGISWIVRLC-ALFTTLGALFLYTNKRVLSCL  123

Query  122  LTTAQ----FILLAGVGHATLNEGVTAKIHQTNHAIHLICAAAWFGGLLPVLWCMQLIKG  177
            L T         LA  GHA +++G+   +H  +   HL  A AW G L  V + + L++ 
Sbjct  124  LMTMSGGVALATLAWGGHAVMHDGLHYYLHLLSDLTHLGAAGAWTGAL--VAFAILLMR-  180

Query  178  RWRHQA------IQALMRFSWCGHFAVIGVLASGVLNALLIT--GFPPTLTTYWGQLLLL  229
            R  H A        +L +F+  G   V+ ++ S ++N L I      P   + WG++LL 
Sbjct  181  RNEHNAQSVIVISDSLAKFATAGTVIVVALILSALVNYLYIAEGNLTPLFNSSWGRILLA  240

Query  230  KAILVMIMVVIALANRYVLVPRM-----RQDEDRAAPWFVWMTKLEWAIGAVVLLIISLL  284
            K  L ++M+++A ANR+ L PR+       + DR+          E+ +  ++L  ++ L
Sbjct  241  KTALFVLMLLLAAANRFHLGPRLEVMVREGNYDRSVALMRNSILTEFVVAIIILGAVAWL  300

Query  285  ATLEP  289
              L P
Sbjct  301  GMLAP  305



Lambda      K        H        a         alpha
   0.335    0.142    0.479    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 274380


  Database: 43e741035d7808b5262909f10f5c7c48.SwissProt.fasta
    Posted date:  Jun 1, 2024  3:44 AM
  Number of letters in database: 1,220
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40