BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 8ae00e009e56aab8b9d4e38c20831b98.SwissProt.fasta
           5 sequences; 2,538 total letters



Query= Z2835

Length=85
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P64495 Uncharacterized protein YoaF [Shigella flexneri]               178     4e-64
P64493 Uncharacterized protein YoaF [Escherichia coli (strain K12)]   178     4e-64
P64494 Uncharacterized protein YoaF [Escherichia coli O6:H1 (stra...  178     4e-64
P89462 Ribonucleoside-diphosphate reductase large subunit [Human ...  31.2    1e-05
P09853 Ribonucleoside-diphosphate reductase large subunit [Human ...  31.2    1e-05


>P64495 Uncharacterized protein YoaF [Shigella flexneri]
Length=84

 Score = 178 bits (451),  Expect = 4e-64
 Identities = 83/84 (99%), Positives = 83/84 (99%), Gaps = 0/84 (0%)

Query  1   MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNN  60
           MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNN
Sbjct  1   MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNN  60

Query  61  CKLPGGETIDEWALWRLDHPAGEK  84
           CKLPGGETIDEWALWR DHPAGEK
Sbjct  61  CKLPGGETIDEWALWRRDHPAGEK  84


>P64493 Uncharacterized protein YoaF [Escherichia coli (strain 
K12)]
Length=84

 Score = 178 bits (451),  Expect = 4e-64
 Identities = 83/84 (99%), Positives = 83/84 (99%), Gaps = 0/84 (0%)

Query  1   MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNN  60
           MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNN
Sbjct  1   MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNN  60

Query  61  CKLPGGETIDEWALWRLDHPAGEK  84
           CKLPGGETIDEWALWR DHPAGEK
Sbjct  61  CKLPGGETIDEWALWRRDHPAGEK  84


>P64494 Uncharacterized protein YoaF [Escherichia coli O6:H1 (strain 
CFT073 / ATCC 700928 / UPEC)]
Length=84

 Score = 178 bits (451),  Expect = 4e-64
 Identities = 83/84 (99%), Positives = 83/84 (99%), Gaps = 0/84 (0%)

Query  1   MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNN  60
           MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNN
Sbjct  1   MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLIPVQTAQGVSNN  60

Query  61  CKLPGGETIDEWALWRLDHPAGEK  84
           CKLPGGETIDEWALWR DHPAGEK
Sbjct  61  CKLPGGETIDEWALWRRDHPAGEK  84


>P89462 Ribonucleoside-diphosphate reductase large subunit [Human 
herpesvirus 2 (strain HG52)]
Length=1142

 Score = 31.2 bits (69),  Expect = 1e-05
 Identities = 11/41 (27%), Positives = 22/41 (54%), Gaps = 0/41 (0%)

Query  9   PCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLI  49
           P    LAG  +PS+ + P+ P++       V+C++  G ++
Sbjct  5   PAASALAGARSPSERQEPREPEVAPPGGDHVFCRKVSGVMV  45


 Score = 16.9 bits (32),  Expect = 1.0
 Identities = 14/59 (24%), Positives = 23/59 (39%), Gaps = 7/59 (12%)

Query  20   PSQPEA---PKPPQIGMANPASVYCQQKGGTLIPVQTAQ----GVSNNCKLPGGETIDE  71
            P  P+A   P PP     +        +GG    V  A+    G S++ +    ++ DE
Sbjct  144  PQGPQAVPPPPPPPFPWGHECCARRDARGGAEKDVGAAESWSDGPSSDSETEDSDSSDE  202


>P09853 Ribonucleoside-diphosphate reductase large subunit [Human 
herpesvirus 2 (strain 333)]
Length=1144

 Score = 31.2 bits (69),  Expect = 1e-05
 Identities = 11/41 (27%), Positives = 22/41 (54%), Gaps = 0/41 (0%)

Query  9   PCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQKGGTLI  49
           P    LAG  +PS+ + P+ P++       V+C++  G ++
Sbjct  5   PAASALAGARSPSERQEPREPEVAPPGGDHVFCRKVSGVMV  45


 Score = 16.9 bits (32),  Expect = 1.0
 Identities = 14/59 (24%), Positives = 23/59 (39%), Gaps = 7/59 (12%)

Query  20   PSQPEA---PKPPQIGMANPASVYCQQKGGTLIPVQTAQ----GVSNNCKLPGGETIDE  71
            P  P+A   P PP     +        +GG    V  A+    G S++ +    ++ DE
Sbjct  144  PQGPQAVPPPPPPPFPWGHECCARRDARGGAEKDVGAAESWSDGPSSDSETEDSDSSDE  202



Lambda      K        H        a         alpha
   0.323    0.139    0.464    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 131340


  Database: 8ae00e009e56aab8b9d4e38c20831b98.SwissProt.fasta
    Posted date:  May 20, 2024  6:14 AM
  Number of letters in database: 2,538
  Number of sequences in database:  5



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40