BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: bf207656d1d042e9d37480e8c2bba8a5.SwissProt.fasta
10 sequences; 1,658 total letters
Query= Z6028
Length=200
Score E
Sequences producing significant alignments: (Bits) Value
P03701 Outer membrane protein lom [Escherichia phage lambda] 160 7e-54
P77184 Putative protein LomR [Escherichia coli (strain K12)] 96.7 1e-30
P23988 Virulence membrane protein PagC [Salmonella typhimurium (s... 100 1e-30
P25253 Outer membrane protein X [Enterobacter cloacae] 96.3 4e-29
P0A920 Outer membrane protein X [Shigella flexneri] 95.5 8e-29
P0A918 Outer membrane protein X [Escherichia coli O6:H1 (strain C... 95.5 8e-29
P0A919 Outer membrane protein X [Escherichia coli O157:H7] 95.5 8e-29
P0A917 Outer membrane protein X [Escherichia coli (strain K12)] 95.5 8e-29
P16454 Attachment invasion locus protein [Yersinia enterocolitica] 87.4 1e-25
Q56957 Attachment invasion locus protein [Yersinia pseudotubercul... 86.7 3e-25
>P03701 Outer membrane protein lom [Escherichia phage lambda]
Length=206
Score = 160 bits (406), Expect = 7e-54
Identities = 84/207 (41%), Positives = 116/207 (56%), Gaps = 9/207 (4%)
Query 1 MRKLCAVILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNV--------PGSDDLNGIN 52
MR +C + V TPA A T + GY G L GIN
Sbjct 1 MRNVCIAVAVFAALAVTV-TPARAEGGHGTFTVGYFQVKPGTLPSLSGGDTGVSHLKGIN 59
Query 53 VKYRYEFMDALGLITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFS 112
VKYRYE D++G++ S +A ++ + +H +S+R R+ SVMAGP +++++ S
Sbjct 60 VKYRYELTDSVGVMASLGFAASKKSSTVMTGEDTFHYESLRGRYVSVMAGPVLQISKQVS 119
Query 113 AYAMAGVAYSRVSTFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESV 172
AYAMAGVA+SR S DY + G + T D+ +TS+AW AG+Q NP SV
Sbjct 120 AYAMAGVAHSRWSGSTMDYRKTEITPGYMKETTTARDESAMRHTSVAWSAGIQINPAASV 179
Query 173 TIDLAYEGSGSGDWRSDAFIVGIGYRF 199
+D+AYEGSGSGDWR+D FIVG+GY+F
Sbjct 180 VVDIAYEGSGSGDWRTDGFIVGVGYKF 206
>P77184 Putative protein LomR [Escherichia coli (strain K12)]
Length=51
Score = 96.7 bits (239), Expect = 1e-30
Identities = 44/49 (90%), Positives = 47/49 (96%), Gaps = 0/49 (0%)
Query 92 VRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFYGDYLRVTDNKGK 140
+RNRWFSVM GPSVRVNEWFSAYAMAG+AYSRVSTF GDYLRVTDNKG+
Sbjct 1 MRNRWFSVMVGPSVRVNEWFSAYAMAGMAYSRVSTFSGDYLRVTDNKGR 49
>P23988 Virulence membrane protein PagC [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=185
Score = 100 bits (249), Expect = 1e-30
Identities = 63/194 (32%), Positives = 95/194 (49%), Gaps = 13/194 (7%)
Query 7 VILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPGSDDLNGINVKYRYEFMDALGLI 66
+ILS +V + A + S GY A + V ++ G+NVKYRYE + I
Sbjct 4 IILSTLVITTSVLVVNVAQADTNAFSVGY--AQSKVQDFKNIRGVNVKYRYEDDSPVSFI 61
Query 67 TSFSYANAEDEQKTRYSDTRWH-EDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVS 125
+S SY + + H D ++ S+M GP+ R+++ FS YA+AGV
Sbjct 62 SSLSYLYGDRQASGSVEPEGIHYHDKFEVKYGSLMVGPAYRLSDNFSLYALAGVGT---- 117
Query 126 TFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVTIDLAYEGSGSGD 185
++ T + T D + S+ T AWGAGVQ NP E++ +D+ YEGS
Sbjct 118 ------VKATFKEHSTQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVVDVGYEGSNISS 171
Query 186 WRSDAFIVGIGYRF 199
+ + F VG+GYRF
Sbjct 172 TKINGFNVGVGYRF 185
>P25253 Outer membrane protein X [Enterobacter cloacae]
Length=172
Score = 96.3 bits (238), Expect = 4e-29
Identities = 63/201 (31%), Positives = 105/201 (52%), Gaps = 31/201 (15%)
Query 1 MRKLCAVILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPG-SDDLNGINVKYRYEF 59
M+K+ + A V V+A T +A ST++ GY A +++ G + NG N+KYRYE
Sbjct 1 MKKIACLSALAAVLAVSAGTAVAAT---STVTGGY--AQSDMQGVMNKTNGFNLKYRYEQ 55
Query 60 -MDALGLITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAG 118
+ LG+I SF+Y + + Y+ + +++ + AGP+ R+N+W S Y + G
Sbjct 56 DNNPLGVIGSFTYTEKDRTENGSYN---------KGQYYGITAGPAYRLNDWASIYGVVG 106
Query 119 VAYSRVSTFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVTIDLAY 178
V Y + + T+N+G +S+ ++GAG+QFNP E+V +D +Y
Sbjct 107 VGYGK--------FQQTENQGLNRTA-------SNSDYGFSYGAGMQFNPIENVALDFSY 151
Query 179 EGSGSGDWRSDAFIVGIGYRF 199
E S + +I G+GYRF
Sbjct 152 EQSRIRNVDVGTWIAGVGYRF 172
>P0A920 Outer membrane protein X [Shigella flexneri]
Length=171
Score = 95.5 bits (236), Expect = 8e-29
Identities = 66/201 (33%), Positives = 101/201 (50%), Gaps = 32/201 (16%)
Query 1 MRKLCAVILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPGS-DDLNGINVKYRYEF 59
M+K+ + A V A T +A ST++ GY A ++ G + + G N+KYRYE
Sbjct 1 MKKIACLSALAAVLAFTAGTSVAAT---STVTGGY--AQSDAQGQMNKMGGFNLKYRYEE 55
Query 60 MDA-LGLITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAG 118
++ LG+I SF+Y T S T D +N+++ + AGP+ R+N+W S Y + G
Sbjct 56 DNSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVG 107
Query 119 VAYSRVSTFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVTIDLAY 178
V Y + T T+ HD S+ ++GAG+QFNP E+V +D +Y
Sbjct 108 VGYGKFQT--------TEYPTYKHDT---------SDYGFSYGAGLQFNPMENVALDFSY 150
Query 179 EGSGSGDWRSDAFIVGIGYRF 199
E S +I G+GYRF
Sbjct 151 EQSRIRSVDVGTWIAGVGYRF 171
>P0A918 Outer membrane protein X [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=171
Score = 95.5 bits (236), Expect = 8e-29
Identities = 66/201 (33%), Positives = 101/201 (50%), Gaps = 32/201 (16%)
Query 1 MRKLCAVILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPGS-DDLNGINVKYRYEF 59
M+K+ + A V A T +A ST++ GY A ++ G + + G N+KYRYE
Sbjct 1 MKKIACLSALAAVLAFTAGTSVAAT---STVTGGY--AQSDAQGQMNKMGGFNLKYRYEE 55
Query 60 MDA-LGLITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAG 118
++ LG+I SF+Y T S T D +N+++ + AGP+ R+N+W S Y + G
Sbjct 56 DNSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVG 107
Query 119 VAYSRVSTFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVTIDLAY 178
V Y + T T+ HD S+ ++GAG+QFNP E+V +D +Y
Sbjct 108 VGYGKFQT--------TEYPTYKHDT---------SDYGFSYGAGLQFNPMENVALDFSY 150
Query 179 EGSGSGDWRSDAFIVGIGYRF 199
E S +I G+GYRF
Sbjct 151 EQSRIRSVDVGTWIAGVGYRF 171
>P0A919 Outer membrane protein X [Escherichia coli O157:H7]
Length=171
Score = 95.5 bits (236), Expect = 8e-29
Identities = 66/201 (33%), Positives = 101/201 (50%), Gaps = 32/201 (16%)
Query 1 MRKLCAVILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPGS-DDLNGINVKYRYEF 59
M+K+ + A V A T +A ST++ GY A ++ G + + G N+KYRYE
Sbjct 1 MKKIACLSALAAVLAFTAGTSVAAT---STVTGGY--AQSDAQGQMNKMGGFNLKYRYEE 55
Query 60 MDA-LGLITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAG 118
++ LG+I SF+Y T S T D +N+++ + AGP+ R+N+W S Y + G
Sbjct 56 DNSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVG 107
Query 119 VAYSRVSTFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVTIDLAY 178
V Y + T T+ HD S+ ++GAG+QFNP E+V +D +Y
Sbjct 108 VGYGKFQT--------TEYPTYKHDT---------SDYGFSYGAGLQFNPMENVALDFSY 150
Query 179 EGSGSGDWRSDAFIVGIGYRF 199
E S +I G+GYRF
Sbjct 151 EQSRIRSVDVGTWIAGVGYRF 171
>P0A917 Outer membrane protein X [Escherichia coli (strain K12)]
Length=171
Score = 95.5 bits (236), Expect = 8e-29
Identities = 66/201 (33%), Positives = 101/201 (50%), Gaps = 32/201 (16%)
Query 1 MRKLCAVILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPGS-DDLNGINVKYRYEF 59
M+K+ + A V A T +A ST++ GY A ++ G + + G N+KYRYE
Sbjct 1 MKKIACLSALAAVLAFTAGTSVAAT---STVTGGY--AQSDAQGQMNKMGGFNLKYRYEE 55
Query 60 MDA-LGLITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAG 118
++ LG+I SF+Y T S T D +N+++ + AGP+ R+N+W S Y + G
Sbjct 56 DNSPLGVIGSFTY--------TEKSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVG 107
Query 119 VAYSRVSTFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVTIDLAY 178
V Y + T T+ HD S+ ++GAG+QFNP E+V +D +Y
Sbjct 108 VGYGKFQT--------TEYPTYKHDT---------SDYGFSYGAGLQFNPMENVALDFSY 150
Query 179 EGSGSGDWRSDAFIVGIGYRF 199
E S +I G+GYRF
Sbjct 151 EQSRIRSVDVGTWIAGVGYRF 171
>P16454 Attachment invasion locus protein [Yersinia enterocolitica]
Length=178
Score = 87.4 bits (215), Expect = 1e-25
Identities = 60/196 (31%), Positives = 96/196 (49%), Gaps = 25/196 (13%)
Query 7 VILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPG---SDDLNGINVKYRYEFMDAL 63
++ S+++ ++ A+ A +S++S GY + G +D G N+KYRYE D
Sbjct 5 LLASSLIACLSIASVNVYAASESSISIGYAQSHVKENGYTLDNDPKGFNLKYRYELDDNW 64
Query 64 GLITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSR 123
G+I SF+Y + + Y ++ V ++SV GPS R+NE+ S Y + G A+ +
Sbjct 65 GVIGSFAYTHQGYD--FFYGSNKFGHGDVD--YYSVTMGPSFRINEYVSLYGLLGAAHGK 120
Query 124 VSTFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVTIDLAYEGSGS 183
V D + S TS+A+GAGVQFNP + ID +YE S
Sbjct 121 VKASVFD------------------ESISASKTSMAYGAGVQFNPLPNFVIDASYEYSKL 162
Query 184 GDWRSDAFIVGIGYRF 199
+ +++G GYRF
Sbjct 163 DSIKVGTWMLGAGYRF 178
>Q56957 Attachment invasion locus protein [Yersinia pseudotuberculosis
serotype I (strain IP32953)]
Length=182
Score = 86.7 bits (213), Expect = 3e-25
Identities = 64/204 (31%), Positives = 101/204 (50%), Gaps = 40/204 (20%)
Query 7 VILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPG---SDDLNGINVKYRYEFMDAL 63
+++S+++ ++ A+ AE +S++S GY + G + G N+KYRYEF +
Sbjct 8 LLVSSLIACLSIASVNVYAEGESSISIGYAQSRVKEDGYKLDKNPRGFNLKYRYEFNNDW 67
Query 64 GLITSFSYANAEDEQKTRYSDTRWHEDSVRN--------RWFSVMAGPSVRVNEWFSAYA 115
G+I SF+ +TR R E+SV +++SV AGP R+NE+ S Y
Sbjct 68 GVIGSFA--------QTR----RGFEESVDGFKLIDGDFKYYSVTAGPVFRINEYVSLYG 115
Query 116 MAGVAYSRVSTFYGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVTID 175
+ G + K K + S+ S TSLA+GAG+QFNP + ID
Sbjct 116 LLGAGHG---------------KAKVSSIFGQSES--RSKTSLAYGAGLQFNPHPNFVID 158
Query 176 LAYEGSGSGDWRSDAFIVGIGYRF 199
+YE S D + +++G GYRF
Sbjct 159 ASYEYSKLDDVKVGTWMLGAGYRF 182
Lambda K H a alpha
0.319 0.132 0.408 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 218788
Database: bf207656d1d042e9d37480e8c2bba8a5.SwissProt.fasta
Posted date: Jun 1, 2024 5:00 PM
Number of letters in database: 1,658
Number of sequences in database: 10
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
