BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 679719dae897832f017e74df69c02fd3.SwissProt.fasta
15 sequences; 4,569 total letters
Query= Z2439
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
P77333 HTH-type transcriptional regulator PgrR [Escherichia coli ... 578 0.0
Q01610 Putative transcriptional regulator [Pseudomonas aeruginosa... 283 8e-99
P75836 Uncharacterized HTH-type transcriptional regulator YcaN [E... 193 2e-63
P72131 HTH-type transcriptional regulator PtxR [Pseudomonas aerug... 142 7e-44
P43011 Uncharacterized HTH-type transcriptional regulator HI_1364... 122 2e-36
P30864 Uncharacterized HTH-type transcriptional regulator YafC [E... 121 6e-36
P67663 HTH-type transcriptional activator AaeR [Escherichia coli ... 112 1e-32
P67664 HTH-type transcriptional activator AaeR [Escherichia coli ... 112 1e-32
P67662 HTH-type transcriptional activator AaeR [Escherichia coli ... 112 1e-32
P37641 Uncharacterized HTH-type transcriptional regulator YhjC [E... 107 9e-31
A0A0H2ZDG9 HTH-type transcriptional repressor PA14_22550 [Pseudom... 104 2e-29
P76250 HTH-type transcriptional regulator DmlR [Escherichia coli ... 101 3e-28
P45463 HTH-type transcriptional activator TtdR [Escherichia coli ... 89.0 9e-24
P52689 Probable HTH-type transcriptional regulator LtrA [Klebsiel... 88.6 1e-23
P14145 HTH-type transcriptional activator AmpR [Rhodobacter capsu... 84.7 2e-22
>P77333 HTH-type transcriptional regulator PgrR [Escherichia coli
(strain K12)]
Length=299
Score = 578 bits (1491), Expect = 0.0
Identities = 297/299 (99%), Positives = 298/299 (99%), Gaps = 0/299 (0%)
Query 1 MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVP 60
MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVP
Sbjct 1 MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVP 60
Query 61 TEAGEHLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSH 120
TEAGEHLLSVLGPMLHDIDSA+ASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSH
Sbjct 61 TEAGEHLLSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSH 120
Query 121 PEIDIQLIIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSV 180
PEIDIQL IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSV
Sbjct 121 PEIDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSV 180
Query 181 PTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHG 240
PTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHG
Sbjct 181 PTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHG 240
Query 241 LAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYKGAV 299
LAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYKGAV
Sbjct 241 LAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYKGAV 299
>Q01610 Putative transcriptional regulator [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=306
Score = 283 bits (725), Expect = 8e-99
Identities = 142/295 (48%), Positives = 201/295 (68%), Gaps = 0/295 (0%)
Query 1 MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVP 60
M + + DL++FV VA E +FTRAAA+L + QSALSQ + +E RL +RLLTRTTRSV P
Sbjct 1 MIKRNLNDLLSFVAVAREGTFTRAAAQLGVTQSALSQSISGLEARLQIRLLTRTTRSVSP 60
Query 61 TEAGEHLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSH 120
T AGE LL+ +G +I++ L LS L+++PSGT+RIT +H +T+LLP + L +
Sbjct 61 TAAGERLLNAIGNRFDEIEAELDELSALRDKPSGTVRITCGDHIQRTLLLPRLTPLLLEY 120
Query 121 PEIDIQLIIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSV 180
P+I ++ I+YG D+V++RFDAGVRLG +DKDMIA+ IGP + MA+V +P YF+
Sbjct 121 PDIKVEFDINYGFRDIVADRFDAGVRLGDTIDKDMIAVPIGPPVRMAVVAAPAYFAAHPK 180
Query 181 PTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHG 240
P S L+DH IN+ + + G W R R V VR++GQL+ NT I+DAA+ G G
Sbjct 181 PRSPRDLVDHNCINMRMQSGGGLYAWDFQRKDRHVNVRVDGQLIFNTSPNIVDAALAGLG 240
Query 241 LAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKY 295
+A+LP ++ I+E +L+RVL+ + P PGY+LYYP+RR AFSL +D L+Y
Sbjct 241 IAWLPEEEFAPHIEEGRLLRVLENWCPLFPGYYLYYPNRRQPSPAFSLVVDALRY 295
>P75836 Uncharacterized HTH-type transcriptional regulator YcaN
[Escherichia coli (strain K12)]
Length=302
Score = 193 bits (490), Expect = 2e-63
Identities = 97/292 (33%), Positives = 168/292 (58%), Gaps = 4/292 (1%)
Query 3 REEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTE 62
R ++D F VA +SF A L ++ SA+S ++ +E+RL +RL RTTRSV TE
Sbjct 2 RMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQRLKIRLFNRTTRSVSLTE 61
Query 63 AGEHLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPE 122
AG +L L P +I L ++D + P+GT++I AA+ L+ + F + +P+
Sbjct 62 AGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARVAARIFLMSLLVGFTREYPD 121
Query 123 IDIQLIIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPT 182
I ++L D L D+V + FDAGVRL ++KDMI++ IGP + + + +P+YF+R P
Sbjct 122 IKVELTTDDSLVDIVQQGFDAGVRLSCIVEKDMISVAIGPPVKLCVAATPEYFARYGKPR 181
Query 183 SVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLA 242
L++HQ + P SG W+ +E+ + + G ++L+ +D ++A + G G+
Sbjct 182 HPHDLLNHQCVVFRYP-SGKPFHWQF---AKELEIAVAGNIILDDVDAELEAVLMGAGIG 237
Query 243 YLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLK 294
YL Y+Q++ + +L VL+ ++ + PG+ +YYP+R++ F+D +K
Sbjct 238 YLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQYMSCGLRAFLDYVK 289
>P72131 HTH-type transcriptional regulator PtxR [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=312
Score = 142 bits (359), Expect = 7e-44
Identities = 94/287 (33%), Positives = 144/287 (50%), Gaps = 5/287 (2%)
Query 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68
L AFV VAE SFT AA L +++S LS+ +RR+E LG++LLTRTTR + T+ GE L
Sbjct 16 LYAFVAVAEHNSFTAAAEALGLSKSLLSEQLRRLEADLGIQLLTRTTRRMTLTDRGELLF 75
Query 69 SVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQLI 128
V ML ++D AL+ + DLQ PSG +RIT + K + F++ P++ ++++
Sbjct 76 GVAQRMLGELDGALSDVRDLQGEPSGRLRITAPQDFVKWHISSVSAAFIRQFPKVQVEML 135
Query 129 IDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLI 188
D +D+V +R D VR+G D + A ++ D V +P Y + L
Sbjct 136 ADDQFSDLVGQRIDLAVRIGWPRDSGLHASKL-CDFQQVAVATPGYLAGLPPVLQPHDLA 194
Query 189 DHQAI-NLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPYD 247
+ I + L T T W R V+ G+LL N + +DG G++ LP
Sbjct 195 RCEWIGHTRLSTPWT---WTFERQRERATVQTRGRLLANNTLAVYRLVLDGAGVSVLPSF 251
Query 248 QVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLK 294
V R I +L+R+L + G + YP R+ FI+ L+
Sbjct 252 LVAREIARGRLVRLLPGWRLPQGGIYALYPSARYMPVRVRAFIESLR 298
>P43011 Uncharacterized HTH-type transcriptional regulator HI_1364
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd)]
Length=288
Score = 122 bits (307), Expect = 2e-36
Identities = 78/278 (28%), Positives = 144/278 (52%), Gaps = 3/278 (1%)
Query 4 EEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEA 63
+++ + F V E +SFT AA + +++ + S++V ++EE L RLL RTTR ++PTEA
Sbjct 2 DKLNAISIFCKVIETQSFTLAAKQQNISVAMASKLVSQLEEHLKTRLLQRTTRKIMPTEA 61
Query 64 GEHLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEI 123
G +L D+D A +S++ L + G + I+ + P + TF+ HP +
Sbjct 62 GMMYYQRCQGILLDLDEADSSITQLTSSLQGNLLISVPRDFGLLFIAPNLPTFMAKHPHL 121
Query 124 DIQLIIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTS 183
I++ + D++SE +D +R+G D +++ +IG + SP+Y +P +
Sbjct 122 HIEVEFNDKKIDLLSEGYDLALRIGYMEDSSLVSRKIG-TTTVHFAASPNYLETNGIPQT 180
Query 184 VSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAY 243
L H + LY N W R + R +++ +++ N+ +++ A G G+A
Sbjct 181 PDDLEHHNGL-LYKNAMNQVN-WVGSRINQTQRFKIQSKVVSNSGFALLNMAKAGLGIAN 238
Query 244 LPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRH 281
LP + RA ++ +LI +L ++ H+ YP+RRH
Sbjct 239 LPKFILGRAFEKGELIEILPEYKQQKLEIHVVYPNRRH 276
>P30864 Uncharacterized HTH-type transcriptional regulator YafC
[Escherichia coli (strain K12)]
Length=304
Score = 121 bits (304), Expect = 6e-36
Identities = 82/288 (28%), Positives = 143/288 (50%), Gaps = 7/288 (2%)
Query 8 DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67
+L FV V E SF+RAA +L A SA+S+ V+++E +LG+ LL RTTR + TE GE
Sbjct 7 ELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLLNRTTRQLSLTEEGERY 66
Query 68 LSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127
+ +L ++ +A + + + +N P G +RI L+P ++ F + +PE+ + L
Sbjct 67 FRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATPVVLHFLMPLIKPFRERYPEVTLSL 126
Query 128 IIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187
+ + +++ + D +R G D + A + I+ SPDY SR P ++ L
Sbjct 127 VSSETIINLIERKVDVAIRAGTLTDSSLRARPLFNSY-RKIIASPDYISRYGKPETIDDL 185
Query 188 IDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPYD 247
H + P S N W + R ++ G L N+ + + + G+G+A L
Sbjct 186 KQHICLGFTEPAS--LNTWPIARSDGQLHEVKYG-LSSNSGETLKQLCLSGNGIACLSDY 242
Query 248 QVERAIKEKKLIRVL-DKFTP-DLPGYHLYYPHRRHAGSAFSLFIDRL 293
+++ I +L+ ++ DK P ++P +YY R + FID L
Sbjct 243 MIDKEIARGELVELMADKVLPVEMPFSAVYYSDRA-VSTRIRAFIDFL 289
>P67663 HTH-type transcriptional activator AaeR [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=309
Score = 112 bits (281), Expect = 1e-32
Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 6/274 (2%)
Query 4 EEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEA 63
E + + F V E SFT AA +L M+ S++SQ V ++E+ L ++LL R+TRS+ TEA
Sbjct 2 ERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEA 61
Query 64 GEHLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEI 123
G MLH++ L N P GT+RI A+ +L LK +P +
Sbjct 62 GRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGL 121
Query 124 DIQLIIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTS 183
+ L+ D++++ D +R+G D + + R+G +PM + + Y ++ +P
Sbjct 122 SVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA-MPMVVCAAKSYLTQYGIPEK 180
Query 184 VSQLIDHQAINLYLPTSGTANRWRLIR-GGREVRVRMEGQLLLNTIDLIIDAAIDGHGLA 242
+ L H + + N + LI G R+ +G+ + N ++ G G+A
Sbjct 181 PADLSSHSWLEYSVRPD---NEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIA 237
Query 243 YLPYDQVERAIKEKKLIRVLDKFTPD-LPGYHLY 275
Y+P V I +L +L ++ D P Y LY
Sbjct 238 YVPLMWVINEINRGELEILLPRYQSDPRPVYALY 271
>P67664 HTH-type transcriptional activator AaeR [Escherichia coli
O157:H7]
Length=309
Score = 112 bits (281), Expect = 1e-32
Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 6/274 (2%)
Query 4 EEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEA 63
E + + F V E SFT AA +L M+ S++SQ V ++E+ L ++LL R+TRS+ TEA
Sbjct 2 ERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEA 61
Query 64 GEHLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEI 123
G MLH++ L N P GT+RI A+ +L LK +P +
Sbjct 62 GRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGL 121
Query 124 DIQLIIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTS 183
+ L+ D++++ D +R+G D + + R+G +PM + + Y ++ +P
Sbjct 122 SVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA-MPMVVCAAKSYLTQYGIPEK 180
Query 184 VSQLIDHQAINLYLPTSGTANRWRLIR-GGREVRVRMEGQLLLNTIDLIIDAAIDGHGLA 242
+ L H + + N + LI G R+ +G+ + N ++ G G+A
Sbjct 181 PADLSSHSWLEYSVRPD---NEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIA 237
Query 243 YLPYDQVERAIKEKKLIRVLDKFTPD-LPGYHLY 275
Y+P V I +L +L ++ D P Y LY
Sbjct 238 YVPLMWVINEINRGELEILLPRYQSDPRPVYALY 271
>P67662 HTH-type transcriptional activator AaeR [Escherichia coli
(strain K12)]
Length=309
Score = 112 bits (281), Expect = 1e-32
Identities = 77/274 (28%), Positives = 130/274 (47%), Gaps = 6/274 (2%)
Query 4 EEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEA 63
E + + F V E SFT AA +L M+ S++SQ V ++E+ L ++LL R+TRS+ TEA
Sbjct 2 ERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLNRSTRSIGLTEA 61
Query 64 GEHLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEI 123
G MLH++ L N P GT+RI A+ +L LK +P +
Sbjct 62 GRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLAGLTAKMLKEYPGL 121
Query 124 DIQLIIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTS 183
+ L+ D++++ D +R+G D + + R+G +PM + + Y ++ +P
Sbjct 122 SVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA-MPMVVCAAKSYLTQYGIPEK 180
Query 184 VSQLIDHQAINLYLPTSGTANRWRLIR-GGREVRVRMEGQLLLNTIDLIIDAAIDGHGLA 242
+ L H + + N + LI G R+ +G+ + N ++ G G+A
Sbjct 181 PADLSSHSWLEYSVRPD---NEFELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIA 237
Query 243 YLPYDQVERAIKEKKLIRVLDKFTPD-LPGYHLY 275
Y+P V I +L +L ++ D P Y LY
Sbjct 238 YVPLMWVINEINRGELEILLPRYQSDPRPVYALY 271
>P37641 Uncharacterized HTH-type transcriptional regulator YhjC
[Escherichia coli (strain K12)]
Length=299
Score = 107 bits (268), Expect = 9e-31
Identities = 83/291 (29%), Positives = 135/291 (46%), Gaps = 3/291 (1%)
Query 4 EEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEA 63
++I + F+ VAE SF+RAA ++ + ++S+ ++ +E +LG +LL RTTR V T
Sbjct 2 DKIHAMQLFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPE 61
Query 64 GEHLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEI 123
G +L ++ SG +RI AK++LLP + FL HP I
Sbjct 62 GMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLLPRLSEFLYLHPGI 121
Query 124 DIQLIIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTS 183
+++L D++ + FD +R G + +IA +G + M SP Y +R P S
Sbjct 122 ELELSSHDRPVDILHDGFDCVIRTGALPEDGVIARPLG-KLTMVNCASPHYLTRFGYPQS 180
Query 184 VSQLIDHQAINLYLPTSGTANRWRLIRGGREVR-VRMEGQLLLNTIDLIIDAAIDGHGLA 242
L H AI Y P G + V+ + G L +N+ + + A + G G+
Sbjct 181 PDDLTSH-AIVRYTPHLGVHPLGFEVASVNGVQWFKSGGMLTVNSSENYLTAGLAGLGII 239
Query 243 YLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRL 293
+P V A++ +LI VL + + L YP RR +LF+ L
Sbjct 240 QIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWL 290
>A0A0H2ZDG9 HTH-type transcriptional repressor PA14_22550 [Pseudomonas
aeruginosa (strain UCBPP-PA14)]
Length=317
Score = 104 bits (259), Expect = 2e-29
Identities = 74/288 (26%), Positives = 131/288 (45%), Gaps = 1/288 (0%)
Query 4 EEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEA 63
+++ + FV V + SFTRAA L + ++ +SQ V +E+ LG+RLL RTTR++ T
Sbjct 2 DKLTAMATFVKVVDAGSFTRAADALGLPKARVSQRVSDLEKHLGVRLLNRTTRALSLTHD 61
Query 64 GEHLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEI 123
G +L ID A+L P G +R+ ++ A+ ++ P + F +P I
Sbjct 62 GSAYFDKCQVLLQQIDELEATLRGGTATPIGRLRVDSLITIARWVIAPRLHDFQARYPRI 121
Query 124 DIQLIIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTS 183
++L +++++ + D +R G D MIA + DI M + SP+Y + S
Sbjct 122 QLRLSSSDRISNLLEDGIDCTIRGGALKDSSMIARHL-CDIQMGLYASPEYLASIGGVDS 180
Query 184 VSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAY 243
+ L + ++ + W L G V+ + + D+ I A + G G+
Sbjct 181 PNDLSQFRRLSWFSGRERNPFMWELESGPERFVVQSGDGMQFDEPDVAISACMAGSGICP 240
Query 244 LPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFID 291
V ++ KL+ VL ++ H+ YP RH F++
Sbjct 241 GAPFAVAGFVRAGKLVPVLPQWHFSAAPVHVIYPGSRHLSVRVRCFVN 288
>P76250 HTH-type transcriptional regulator DmlR [Escherichia coli
(strain K12)]
Length=307
Score = 101 bits (251), Expect = 3e-28
Identities = 62/258 (24%), Positives = 129/258 (50%), Gaps = 2/258 (1%)
Query 8 DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHL 67
DL F++VA F A L ++ + +S+ + +E+ L + LL RTTR V TE GE +
Sbjct 9 DLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGERI 68
Query 68 LSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127
+L D+ + LSD++ P G +RI + + ++ PA+ K++P+++++
Sbjct 69 YEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALLALAKAYPQLELRF 128
Query 128 IIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQL 187
++ L D+V+E D +R+G ++ ++IA ++ + + + SP++ ++ P ++ L
Sbjct 129 DVEDRLVDLVNEGVDLDIRIGDDIAPNLIARKLATNYRI-LCASPEFIAQHGAPKHLTDL 187
Query 188 IDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPYD 247
+ + W+L +++ G L N +++ +DG G+A +
Sbjct 188 SALPCL-VIKERDHPFGVWQLRNKEGPHAIKVTGPLSSNHGEIVHQWCLDGQGIALRSWW 246
Query 248 QVERAIKEKKLIRVLDKF 265
V I L++VL ++
Sbjct 247 DVSENIASGHLVQVLPEY 264
>P45463 HTH-type transcriptional activator TtdR [Escherichia coli
(strain K12)]
Length=310
Score = 89.0 bits (219), Expect = 9e-24
Identities = 63/262 (24%), Positives = 123/262 (47%), Gaps = 10/262 (4%)
Query 8 DLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAG--- 64
DL V + SF+ AAA L + +++ ++ +E L LL R+ R V TE+G
Sbjct 10 DLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLATTLLNRSARGVALTESGQRC 69
Query 65 -EHLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEI 123
EH L +L +D ++ ++ RP G IRI ++ + PA+ ++++PE+
Sbjct 70 YEHALEILTQYQRLVDD----VTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPEL 125
Query 124 DIQLIIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTS 183
+ + D+V + D +R+ E+ IA + + + +P+Y + P S
Sbjct 126 QVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKN-KRILCAAPEYLQKYPQPQS 184
Query 184 VSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAY 243
+ +L H + + T W L G + V++ G L N+ ++++ A++G G+
Sbjct 185 LQELSRHDCL-VTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIML 243
Query 244 LPYDQVERAIKEKKLIRVLDKF 265
V ++ KL++VL ++
Sbjct 244 RSEWDVLPFLESGKLVQVLPEY 265
>P52689 Probable HTH-type transcriptional regulator LtrA [Klebsiella
pneumoniae]
Length=309
Score = 88.6 bits (218), Expect = 1e-23
Identities = 62/260 (24%), Positives = 116/260 (45%), Gaps = 3/260 (1%)
Query 6 IADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGE 65
+ DL FV + ++ SF+ A + + SA+S+ V R+E +G +LL RTTR + ++AGE
Sbjct 6 LPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRLSDAGE 65
Query 66 HLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITTVEHAAKTILLPAMRTFLKSHPEIDI 125
+ ML A+ S Q G + ++ + + ++ P M F +P++D+
Sbjct 66 TIYQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRYPQVDV 125
Query 126 QLIIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVS 185
L ++ D + + D +R+ + + P I I + Y + P +
Sbjct 126 CLRLEDRPLDFIDDGIDLALRITDTPSPGLHGKPLMP-IRHVICATEAYLQQHGTPYTPQ 184
Query 186 QLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245
L H I+ L + RW+ R G+ V+ G+ N + +DA G+ LP
Sbjct 185 DLRAHSCIS--LGETPADARWKFRREGKTETVQTYGRYAANHTAVRLDAVRQHLGIGSLP 242
Query 246 YDQVERAIKEKKLIRVLDKF 265
A+ +++VL ++
Sbjct 243 LFTAREALANGDIVQVLPEW 262
>P14145 HTH-type transcriptional activator AmpR [Rhodobacter capsulatus]
Length=289
Score = 84.7 bits (208), Expect = 2e-22
Identities = 77/284 (27%), Positives = 126/284 (44%), Gaps = 18/284 (6%)
Query 9 LMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRLLTRTTRSVVPTEAGEHLL 68
L F V + SFT+AA L + Q+A+S V R+E+ LG L RT++ ++PT+ G L
Sbjct 11 LRVFEVAMRQGSFTKAAIELRVTQAAVSHQVARLEDLLGTALFLRTSQGLIPTDEGRLLF 70
Query 69 SVLGPMLHDIDSALASLSDLQNRPS-GTIRITTVEHAAKTILLPAMRTFLKSHPEIDIQL 127
VL H D+ L L R +++ A L+P + F ++HP+ID+++
Sbjct 71 PVLE---HGFDAMSRVLDRLGGRRDIEVLKVGVNTTFAMCWLMPRLEAFRQAHPQIDLRI 127
Query 128 IIDYGLTDVVSERFDAGVRL--GGEMDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVS 185
+ +++ E D +R GG D I + + PMA + +P SR P+ +
Sbjct 128 STNNNRVEILREGLDMAIRFGTGGWTGHDAIPL---AEAPMAPLCAPGLASRLLHPSDLG 184
Query 186 QLIDHQAINLYLPTSGTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLP 245
Q+ L S + W V + ++ + + A G G+A LP
Sbjct 185 QVT--------LLRSYRSAEWPGWFEAAGVPCPPVTGPVFDSSVALAELATSGAGVALLP 236
Query 246 YDQVERAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLF 289
E I + +L + T + Y+L +P R A SA S F
Sbjct 237 ISMFESYIAQGRLAQPFG-VTVSVGRYYLAWPSDRPATSAMSTF 279
Lambda K H a alpha
0.325 0.140 0.400 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 992970
Database: 679719dae897832f017e74df69c02fd3.SwissProt.fasta
Posted date: May 31, 2024 2:56 PM
Number of letters in database: 4,569
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
