BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: d2ebf12687ef6f6095eb7d636550cd44.SwissProt.fasta
           6 sequences; 1,050 total letters



Query= Z2303

Length=189
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0ABE6 Superoxide oxidase CybB [Shigella flexneri]                    362     3e-134
P0ABE5 Superoxide oxidase CybB [Escherichia coli (strain K12)]        362     3e-134
Q9X6B2 Probable superoxide oxidase CybB [Yersinia pestis]             248     4e-89 
P76345 Cytochrome b561 homolog 1 [Escherichia coli (strain K12)]      150     1e-50 
P75925 Cytochrome b561 homolog 2 [Escherichia coli (strain K12)]      70.5    2e-19 
P16670 Cytochrome b562 [Cereibacter sphaeroides (strain ATCC 1702...  52.8    4e-13 


>P0ABE6 Superoxide oxidase CybB [Shigella flexneri]
Length=176

 Score = 362 bits (929),  Expect = 3e-134
 Identities = 175/176 (99%), Positives = 176/176 (100%), Gaps = 0/176 (0%)

Query  13   MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRL  72
            MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRL
Sbjct  1    MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRL  60

Query  73   LLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMP  132
            LLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMP
Sbjct  61   LLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMP  120

Query  133  YASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLVRMMPRKRS  188
            YASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTL+RMMPRKRS
Sbjct  121  YASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLLRMMPRKRS  176


>P0ABE5 Superoxide oxidase CybB [Escherichia coli (strain K12)]
Length=176

 Score = 362 bits (929),  Expect = 3e-134
 Identities = 175/176 (99%), Positives = 176/176 (100%), Gaps = 0/176 (0%)

Query  13   MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRL  72
            MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRL
Sbjct  1    MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRL  60

Query  73   LLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMP  132
            LLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMP
Sbjct  61   LLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMP  120

Query  133  YASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLVRMMPRKRS  188
            YASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTL+RMMPRKRS
Sbjct  121  YASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLLRMMPRKRS  176


>Q9X6B2 Probable superoxide oxidase CybB [Yersinia pestis]
Length=176

 Score = 248 bits (633),  Expect = 4e-89
 Identities = 115/175 (66%), Positives = 143/175 (82%), Gaps = 0/175 (0%)

Query  13   MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMIHVSCGISILVLMVVRL  72
            M  KYS LQI IHWLV LLVI A+ ++E RGF PRS +P + MIH SCGI+ILVLM+ R+
Sbjct  1    MHKKYSCLQIGIHWLVLLLVIIAWSSIELRGFAPRSYQPWMKMIHFSCGIAILVLMMTRI  60

Query  73   LLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMP  132
            L++L+YPTPPI+PKP PM+ GLAH+GH VIYLLFIALP+IG+ ++Y RG+ W AFGL MP
Sbjct  61   LIQLRYPTPPIVPKPSPMIVGLAHVGHWVIYLLFIALPIIGIAILYCRGSSWIAFGLIMP  120

Query  133  YASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLVRMMPRKR  187
            +A +ANF+  D+LK++H  LAN+ YFVIGLHA AAL HHY  KDNTL+RMMP+KR
Sbjct  121  HAEQANFDLADTLKAYHLLLANMSYFVIGLHALAALLHHYVLKDNTLLRMMPKKR  175


>P76345 Cytochrome b561 homolog 1 [Escherichia coli (strain K12)]
Length=176

 Score = 150 bits (379),  Expect = 1e-50
 Identities = 73/175 (42%), Positives = 105/175 (60%), Gaps = 2/175 (1%)

Query  15   NKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINM--IHVSCGISILVLMVVRL  72
            N++S+ QI +HW+  L V   Y AME RG+FP+     + M   H + GI + VLM  RL
Sbjct  2    NRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRETHYNAGIFVWVLMFSRL  61

Query  73   LLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFGLTMP  132
            +++ +Y  P I+P P       A L H+++Y+ F+ALP++G+ +M   G  W   G  + 
Sbjct  62   IIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFLGFNVS  121

Query  133  YASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLVRMMPRKR  187
                 N E    +K+ HET AN+GYF+I  HA AAL HHY  KDNTL+RMMPR++
Sbjct  122  PFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRRK  176


>P75925 Cytochrome b561 homolog 2 [Escherichia coli (strain K12)]
Length=188

 Score = 70.5 bits (171),  Expect = 2e-19
 Identities = 49/181 (27%), Positives = 83/181 (46%), Gaps = 13/181 (7%)

Query  16   KYSRLQISIHWLVFLLVIAAYCA-------MEFRGFFPRSDRPLINMIHVSCGISILVLM  68
            +Y  +  + HWL  ++V   +           + G++ ++       +H S GI +++ +
Sbjct  9    RYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGWYHKAPE-----LHKSIGILLMMGL  63

Query  69   VVRLLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWFAFG  128
            V+R+L R+  P P  +P   PM    A  GHL +YLL  A+ + G ++    G P   FG
Sbjct  64   VIRVLWRVISPPPGPLPSYSPMTRLAARAGHLALYLLLFAIGISGYLISTADGKPISVFG  123

Query  129  -LTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLVRMMPRKR  187
               +P        + D   + H  LA     +  +H   AL HH+  KD+TL RM+ +  
Sbjct  124  WFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHGFMALKHHFIDKDDTLKRMLGKSS  183

Query  188  S  188
            S
Sbjct  184  S  184


>P16670 Cytochrome b562 [Cereibacter sphaeroides (strain ATCC 
17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 
/ NCIMB 8253 / ATH 2.4.1.)]
Length=158

 Score = 52.8 bits (125),  Expect = 4e-13
 Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 34/178 (19%)

Query  14   ENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLI------NMIHVSCGISILVL  67
            E  Y+RLQI++HW +  LV+  Y   E       + R  +      + +HV  G+++LVL
Sbjct  4    EPGYTRLQITLHWAIAGLVLFNYIFGETMERAYDAVRQNVEPAGVGHYLHVVVGLAVLVL  63

Query  68   MVVRLLLR--LKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPWF  125
             +VR+  R  L  P     P  K +  GL  L    +YLL + +P +G+   +  G  W 
Sbjct  64   TLVRIGARFVLGVPEKGTTPGDK-VAAGLQGL----LYLLTLLVPALGMTA-WGGGQAWA  117

Query  126  AFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLVRMM  183
            A                      H   AN    +  +HA +AL H Y  KD  L+RMM
Sbjct  118  A--------------------GPHVLAANAIMLLALVHAVSALFHQYVLKDRLLLRMM  155


 Score = 17.7 bits (34),  Expect = 0.58
 Identities = 8/28 (29%), Positives = 15/28 (54%), Gaps = 0/28 (0%)

Query  52   LINMIHVSCGISILVLMVVRLLLRLKYP  79
            L+ ++H    +    ++  RLLLR+  P
Sbjct  130  LLALVHAVSALFHQYVLKDRLLLRMMRP  157



Lambda      K        H        a         alpha
   0.333    0.144    0.467    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 136512


  Database: d2ebf12687ef6f6095eb7d636550cd44.SwissProt.fasta
    Posted date:  Jun 1, 2024  4:56 PM
  Number of letters in database: 1,050
  Number of sequences in database:  6



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40