BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 6d90bf84a5355d65d2560fd79ff0f60b.SwissProt.fasta
           4 sequences; 652 total letters



Query= Z2169

Length=73
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P31121 Multiple antibiotic resistance protein MarB [Escherichia c...  132     6e-47
P0A215 Multiple antibiotic resistance protein MarB [Salmonella ty...  61.2    9e-19
P0A214 Multiple antibiotic resistance protein MarB [Salmonella ty...  61.2    9e-19
A0QZE3 Putative hydrolase MSMEG_3995/MSMEI_3903 [Mycolicibacteriu...  33.9    2e-07


>P31121 Multiple antibiotic resistance protein MarB [Escherichia 
coli (strain K12)]
Length=72

 Score = 132 bits (332),  Expect = 6e-47
 Identities = 65/72 (90%), Positives = 67/72 (93%), Gaps = 0/72 (0%)

Query  1   MKPLLSAIAAALILFSAQGVAEQTQQPLVTSCGDVVVVPPSQEQPPFDLNHMGTGSDKSD  60
           MKPL SAIAAALILFSAQGVAEQT QP+VTSC +VVVVPPSQE PPFDLNHMGTGSDKSD
Sbjct  1   MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEHPPFDLNHMGTGSDKSD  60

Query  61  ALGVPYYNQQAM  72
           ALGVPYYNQ AM
Sbjct  61  ALGVPYYNQHAM  72


>P0A215 Multiple antibiotic resistance protein MarB [Salmonella 
typhi]
Length=71

 Score = 61.2 bits (147),  Expect = 9e-19
 Identities = 32/70 (46%), Positives = 44/70 (63%), Gaps = 1/70 (1%)

Query  1   MKPLLSAIAAALILFSAQGVAEQTQQPLVTSCGDVVVVPPSQEQPPFDLNHMGTGSDKSD  60
           MK L  A+   L++ S  G+AEQT  P+  +  DV+++P   + PP DL+ +   SDKSD
Sbjct  1   MKMLFPALPGLLLIASGYGIAEQTLLPVAQNSRDVMLLPCVGD-PPNDLHPVSVNSDKSD  59

Query  61  ALGVPYYNQQ  70
            LGVPYYN Q
Sbjct  60  ELGVPYYNDQ  69


>P0A214 Multiple antibiotic resistance protein MarB [Salmonella 
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=71

 Score = 61.2 bits (147),  Expect = 9e-19
 Identities = 32/70 (46%), Positives = 44/70 (63%), Gaps = 1/70 (1%)

Query  1   MKPLLSAIAAALILFSAQGVAEQTQQPLVTSCGDVVVVPPSQEQPPFDLNHMGTGSDKSD  60
           MK L  A+   L++ S  G+AEQT  P+  +  DV+++P   + PP DL+ +   SDKSD
Sbjct  1   MKMLFPALPGLLLIASGYGIAEQTLLPVAQNSRDVMLLPCVGD-PPNDLHPVSVNSDKSD  59

Query  61  ALGVPYYNQQ  70
            LGVPYYN Q
Sbjct  60  ELGVPYYNDQ  69


>A0QZE3 Putative hydrolase MSMEG_3995/MSMEI_3903 [Mycolicibacterium 
smegmatis (strain ATCC 700084 / mc(2)155)]
Length=438

 Score = 33.9 bits (76),  Expect = 2e-07
 Identities = 18/56 (32%), Positives = 33/56 (59%), Gaps = 1/56 (2%)

Query  8    IAAALILFSAQGVAEQTQQPLVTSCGDVVVVPPSQEQPPFDLN-HMGTGSDKSDAL  62
            + AALI+ + + +A++  + L TSCG + V+P S    P +++ H+   SD  + L
Sbjct  258  LGAALIVVALRDIADEFGEELHTSCGQLTVLPNSPVVVPREVHMHLDLRSDNDELL  313



Lambda      K        H        a         alpha
   0.323    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 30316


  Database: 6d90bf84a5355d65d2560fd79ff0f60b.SwissProt.fasta
    Posted date:  May 8, 2024  4:30 PM
  Number of letters in database: 652
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40