BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 05d141339c8483e94a6b815f94d71da6.SwissProt.fasta
           1 sequences; 63 total letters



Query= Z2038

Length=67
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P29010 Uncharacterized protein YdfD [Escherichia coli (strain K12)]   122     3e-44


>P29010 Uncharacterized protein YdfD [Escherichia coli (strain 
K12)]
Length=63

 Score = 122 bits (306),  Expect = 3e-44
 Identities = 59/63 (94%), Positives = 61/63 (97%), Gaps = 0/63 (0%)

Query  4   MNTAFALVLTVFLVSGEPVDIAVSVHRTMQECVTAATEQKIPGNCYPVDKVIHQDNNEIP  63
           MN+AF LVLTVFLVSGEPVDIAVSVHRTMQEC+TAATEQKIPGNCYPVDKVIHQDN EIP
Sbjct  1   MNSAFVLVLTVFLVSGEPVDIAVSVHRTMQECMTAATEQKIPGNCYPVDKVIHQDNIEIP  60

Query  64  AGL  66
           AGL
Sbjct  61  AGL  63



Lambda      K        H        a         alpha
   0.329    0.139    0.420    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3596


  Database: 05d141339c8483e94a6b815f94d71da6.SwissProt.fasta
    Posted date:  Jun 1, 2024  9:47 AM
  Number of letters in database: 63
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40