BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: ed6466f47ef909c1148fd12a2b748d75.SwissProt.fasta
12 sequences; 2,631 total letters
Query= Z1673
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
P52106 CsgBAC operon transcriptional regulatory protein [Escheric... 430 1e-159
O54294 Probable csgAB operon transcriptional regulatory protein [... 412 2e-152
P55184 Uncharacterized transcriptional regulatory protein YxjL [B... 71.2 8e-19
O07528 Uncharacterized transcriptional regulatory protein YhcZ [B... 68.6 7e-18
O32197 Transcriptional regulatory protein LiaR [Bacillus subtilis... 61.2 3e-15
P13800 Transcriptional regulatory protein DegU [Bacillus subtilis... 60.8 5e-15
P54794 Monoamine regulon transcriptional regulator [Klebsiella ae... 59.7 1e-14
Q4L8Q6 Oxygen regulatory protein NreC [Staphylococcus haemolyticu... 59.3 2e-14
Q7WZY4 Oxygen regulatory protein NreC [Staphylococcus carnosus (s... 59.3 2e-14
P54662 Transcriptional regulatory protein DegU [Brevibacillus bre... 59.3 2e-14
P0AEL8 Fimbriae Z protein [Escherichia coli (strain K12)] 58.9 2e-14
P94439 Transcriptional regulatory protein LnrK [Bacillus subtilis... 57.4 8e-14
>P52106 CsgBAC operon transcriptional regulatory protein [Escherichia
coli (strain K12)]
Length=216
Score = 430 bits (1106), Expect = 1e-159
Identities = 214/216 (99%), Positives = 215/216 (99%), Gaps = 0/216 (0%)
Query 1 MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDM 60
MFNEVHSIHGHTLLLITK SLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDM
Sbjct 1 MFNEVHSIHGHTLLLITKSSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDM 60
Query 61 MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYAMEDQERVVNG 120
MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFY+MEDQERVVNG
Sbjct 61 MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYSMEDQERVVNG 120
Query 121 LQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL 180
LQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL
Sbjct 121 LQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL 180
Query 181 FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR 216
FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR
Sbjct 181 FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR 216
>O54294 Probable csgAB operon transcriptional regulatory protein
[Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=216
Score = 412 bits (1058), Expect = 2e-152
Identities = 201/216 (93%), Positives = 210/216 (97%), Gaps = 0/216 (0%)
Query 1 MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDISSGSIILLDM 60
MFNEVHS HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSL+DIS+G I+L+DM
Sbjct 1 MFNEVHSSHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLEDISAGCIVLMDM 60
Query 61 MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYAMEDQERVVNG 120
MEADKKLIHYWQD LSRKNNNIK LLLNTP+DYPYR+IENWPHINGVFYA EDQE VV+G
Sbjct 61 MEADKKLIHYWQDNLSRKNNNIKTLLLNTPDDYPYREIENWPHINGVFYATEDQEHVVSG 120
Query 121 LQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL 180
LQG+LRGECYF+QKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL
Sbjct 121 LQGILRGECYFSQKLASYLITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSL 180
Query 181 FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR 216
FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR
Sbjct 181 FISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR 216
>P55184 Uncharacterized transcriptional regulatory protein YxjL
[Bacillus subtilis (strain 168)]
Length=218
Score = 71.2 bits (173), Expect = 8e-19
Identities = 51/166 (31%), Positives = 86/166 (52%), Gaps = 12/166 (7%)
Query 55 IILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNT--PEDYPYRDIENWPHINGVFYAME 112
+IL+D+ I +D +S N KI++L T E+Y + I V Y ++
Sbjct 54 VILMDVQMPRCSGIEAAKDIMSALPNT-KIVILTTFDTEEYVFEGIR----AGAVGYLLK 108
Query 113 DQ--ERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESAL---LTHREKEILNKL 167
D E +++ ++ RGE F A+ +I+ + + + L T RE E+L ++
Sbjct 109 DTLPEELIDAIRAAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTKRELEVLQQM 168
Query 168 RIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213
G N +IA LF+SE+TVKTH++ + +K ++RTQAV +A N
Sbjct 169 AYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRN 214
>O07528 Uncharacterized transcriptional regulatory protein YhcZ
[Bacillus subtilis (strain 168)]
Length=214
Score = 68.6 bits (166), Expect = 7e-18
Identities = 53/156 (34%), Positives = 81/156 (52%), Gaps = 14/156 (9%)
Query 58 LDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYAMEDQE-- 115
+D ++A KK I + DT NI +L + +++ ++ Y ++D E
Sbjct 59 MDGIQAIKKAIQQFPDT------NIIVLTSYSDQEHVIPALQ----AGAKAYQLKDTEPE 108
Query 116 RVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESAL-LTHREKEILNKLRIGASNN 174
+V Q V GE + + +++TH N E LT REK++L ++ G SN
Sbjct 109 ELVKTRQ-VHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTEIANGKSNK 167
Query 175 EIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210
EIA +LFISE TVKTH+ NL K+ V +RTQA +A
Sbjct 168 EIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFA 203
>O32197 Transcriptional regulatory protein LiaR [Bacillus subtilis
(strain 168)]
Length=211
Score = 61.2 bits (147), Expect = 3e-15
Identities = 47/166 (28%), Positives = 84/166 (51%), Gaps = 9/166 (5%)
Query 52 SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNT--PEDYPYRDIENWPHINGVFY 109
S +IL+D++ I + + R+ ++ KI++L + +D Y IE + Y
Sbjct 47 SPDVILMDLVMEGMDGIEATKQ-ICRELSDPKIIVLTSFIDDDKVYPVIE----AGALSY 101
Query 110 AMEDQE--RVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKEILNKL 167
++ + + + ++ +GE K+A +++ + N+ LT RE EIL +
Sbjct 102 LLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCLI 161
Query 168 RIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213
G +N EI LFI+ TVKTH+ N+ K+ V +RTQA +A+ N
Sbjct 162 AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRN 207
>P13800 Transcriptional regulatory protein DegU [Bacillus subtilis
(strain 168)]
Length=229
Score = 60.8 bits (146), Expect = 5e-15
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 22/167 (13%)
Query 61 MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYAMEDQERVVNG 120
+EA K+L+ + ++ K+++L+ +D Y G D + ++
Sbjct 65 VEATKQLVELYPES--------KVIILSIHDDENYVTHALKTGARGYLLKEMDADTLIEA 116
Query 121 LQGVLRGECYFTQKLASYLIT------------HSGNYRYNSTESAL--LTHREKEILNK 166
++ V G Y K+ L+ H + Y L LT RE E+L
Sbjct 117 VKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIRRPLHILTRRECEVLQM 176
Query 167 LRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDN 213
L G SN I SLFISE TVK H+ N+ +K+ V +RTQAV A N
Sbjct 177 LADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKN 223
>P54794 Monoamine regulon transcriptional regulator [Klebsiella
aerogenes]
Length=227
Score = 59.7 bits (143), Expect = 1e-14
Identities = 32/55 (58%), Positives = 40/55 (73%), Gaps = 0/55 (0%)
Query 154 ALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVS 208
A+LT +E+EI+ +R GASN IAR L IS +TVKTHL N+F K V NRT+ VS
Sbjct 160 AILTAKEREIVGMVREGASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVS 214
>Q4L8Q6 Oxygen regulatory protein NreC [Staphylococcus haemolyticus
(strain JCSC1435)]
Length=217
Score = 59.3 bits (142), Expect = 2e-14
Identities = 43/161 (27%), Positives = 77/161 (48%), Gaps = 7/161 (4%)
Query 55 IILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYAMEDQ 114
I+ L M + LI + + S I IL + E+Y + + N G
Sbjct 51 IMDLSMPPGESGLIATSKISESFPETKILILTMYDDEEYLFHVLRNGA--KGYILKNAPD 108
Query 115 ERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESA-----LLTHREKEILNKLRI 169
E+++ ++ V +GE Y KL + L+ N++++ S +L+ RE EIL +
Sbjct 109 EQLLLAVRTVYKGETYVDMKLTTSLVNEFVNHKHSDDVSTNDPFKILSKRELEILPLIAK 168
Query 170 GASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210
G N +IA LF+S TV+ H ++ K+ +K++ + V +A
Sbjct 169 GYGNKDIAEKLFVSVKTVEAHKTHIMTKLDLKSKPELVEYA 209
>Q7WZY4 Oxygen regulatory protein NreC [Staphylococcus carnosus
(strain TM300)]
Length=217
Score = 59.3 bits (142), Expect = 2e-14
Identities = 41/153 (27%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query 63 ADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGVFYAMEDQERVVNGLQ 122
A K++ + DT I IL + E+Y + + N G E++++ ++
Sbjct 65 ATSKIVESFPDT------KILILTMYDDEEYLFHVLRNGA--KGYILKNAPDEQLISAVR 116
Query 123 GVLRGECYFTQKLASYLITHSGNYRYNSTESA-----LLTHREKEILNKLRIGASNNEIA 177
V RG+ Y K+ + L+ N S +L+ RE EIL + G N EIA
Sbjct 117 TVYRGDTYIDPKMTTSLVNEFVNNTGQDANSTNDPFRILSKRELEILPLIAKGYGNKEIA 176
Query 178 RSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210
LF+S TV+ H ++ +K+ +K++ + V +A
Sbjct 177 EKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYA 209
>P54662 Transcriptional regulatory protein DegU [Brevibacillus
brevis]
Length=236
Score = 59.3 bits (142), Expect = 2e-14
Identities = 49/175 (28%), Positives = 79/175 (45%), Gaps = 30/175 (17%)
Query 55 IILLDM-------MEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWPHINGV 107
+IL+D+ +EA + LI + D +K+L+L+ +D Y +G
Sbjct 58 VILMDINMPKVNGVEATRDLIQRYPD--------VKVLVLSIHDDESYVTHVLKTGASGY 109
Query 108 FYAMEDQERVVNGLQGVLRGECYFTQKLASYLITH-----------SGNYRYNSTESA-- 154
D + ++ ++ V +G Y K+ LI S + E
Sbjct 110 LLKEMDADALIEAVKVVAQGGAYIHPKVTHNLIKEYRRLVNEDEQESSEIGFKEVEYRKP 169
Query 155 --LLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAV 207
+LT RE E+L + G SN I +L+ISE TVK H+ N+ +K+ V +RTQAV
Sbjct 170 LHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAV 224
>P0AEL8 Fimbriae Z protein [Escherichia coli (strain K12)]
Length=210
Score = 58.9 bits (141), Expect = 2e-14
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 2/131 (2%)
Query 80 NNIKILLLNTPEDYPYRDIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYL 139
+ +K+L L++ + Y NG DQ + + +Q +L G +F + +Y+
Sbjct 76 STVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYI 135
Query 140 ITHSGNYRYNSTESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIA 199
S NS+ +L++RE IL L G SN EIA L +S TV H N++ K+
Sbjct 136 --KSNKCSTNSSTVTVLSNREVTILRYLVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLG 193
Query 200 VKNRTQAVSWA 210
+ + + + +A
Sbjct 194 LHSIVELIDYA 204
>P94439 Transcriptional regulatory protein LnrK [Bacillus subtilis
(strain 168)]
Length=220
Score = 57.4 bits (137), Expect = 8e-14
Identities = 27/55 (49%), Positives = 39/55 (71%), Gaps = 0/55 (0%)
Query 156 LTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWA 210
LT RE E+L +L G +N EIA L+I+E TVK H+ N+ K+AV++RTQA ++
Sbjct 158 LTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYS 212
Lambda K H a alpha
0.321 0.135 0.394 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 389325
Database: ed6466f47ef909c1148fd12a2b748d75.SwissProt.fasta
Posted date: May 20, 2024 1:38 PM
Number of letters in database: 2,631
Number of sequences in database: 12
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
