BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 2c3dcdc55fc16d121cba44547406296a.SwissProt.fasta
14 sequences; 13,892 total letters
Query= Z1410
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
P58356 Sensor protein TorS [Escherichia coli O157:H7] 1722 0.0
P39453 Sensor protein TorS [Escherichia coli (strain K12)] 1686 0.0
Q9HUI3 Sensor histidine kinase AruS [Pseudomonas aeruginosa (stra... 231 4e-66
P48027 Sensor protein GacS [Pseudomonas syringae pv. syringae] 229 8e-66
Q9F8D7 Sensor histidine kinase GacS [Pseudomonas protegens (strai... 213 2e-60
P0C0F6 Sensory/regulatory protein RpfC [Xanthomonas campestris pv... 200 6e-57
P0C0F7 Sensory/regulatory protein RpfC [Xanthomonas campestris pv... 200 8e-57
P58363 Aerobic respiration control sensor protein ArcB [Escherich... 200 1e-56
P0AEC4 Aerobic respiration control sensor protein ArcB [Shigella ... 200 1e-56
P0AEC3 Aerobic respiration control sensor protein ArcB [Escherich... 200 1e-56
Q54YZ9 Hybrid signal transduction histidine kinase J [Dictyosteli... 188 1e-51
P0AEC5 Signal transduction histidine-protein kinase BarA [Escheri... 186 2e-51
P40330 Virulence sensor protein BvgS [Bordetella parapertussis (s... 183 3e-50
P26762 Virulence sensor protein BvgS [Bordetella bronchiseptica (... 182 7e-50
>P58356 Sensor protein TorS [Escherichia coli O157:H7]
Length=914
Score = 1722 bits (4461), Expect = 0.0
Identities = 904/904 (100%), Positives = 904/904 (100%), Gaps = 0/904 (0%)
Query 1 MGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLT 60
MGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLT
Sbjct 11 MGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLT 70
Query 61 SADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGRR 120
SADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGRR
Sbjct 71 SADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGRR 130
Query 121 LQLRQQQQRLSQQIVAAADEIARLAQGQANNAATSAGATQAGIYDLIEQDQRQAAESALD 180
LQLRQQQQRLSQQIVAAADEIARLAQGQANNAATSAGATQAGIYDLIEQDQRQAAESALD
Sbjct 131 LQLRQQQQRLSQQIVAAADEIARLAQGQANNAATSAGATQAGIYDLIEQDQRQAAESALD 190
Query 181 RLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI 240
RLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI
Sbjct 191 RLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI 250
Query 241 EDPGVRAQVATTLTTVSQYSDLLALFQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDT 300
EDPGVRAQVATTLTTVSQYSDLLALFQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDT
Sbjct 251 EDPGVRAQVATTLTTVSQYSDLLALFQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDT 310
Query 301 IELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRL 360
IELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRL
Sbjct 311 IELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRL 370
Query 361 LDGDIDSPFPETAGVRELDTIGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEH 420
LDGDIDSPFPETAGVRELDTIGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEH
Sbjct 371 LDGDIDSPFPETAGVRELDTIGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEH 430
Query 421 RQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGE 480
RQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGE
Sbjct 431 RQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGE 490
Query 481 SLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADD 540
SLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADD
Sbjct 491 SLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADD 550
Query 541 VPTALMGDPRRIRQVITNLLSNALRFTDEGQIVLRSRTDGEQWLVEVEDSGCGIDPAKLA 600
VPTALMGDPRRIRQVITNLLSNALRFTDEGQIVLRSRTDGEQWLVEVEDSGCGIDPAKLA
Sbjct 551 VPTALMGDPRRIRQVITNLLSNALRFTDEGQIVLRSRTDGEQWLVEVEDSGCGIDPAKLA 610
Query 601 EIFQPFIQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP 660
EIFQPFIQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP
Sbjct 611 EIFQPFIQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP 670
Query 661 KTVNQAVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAA 720
KTVNQAVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAA
Sbjct 671 KTVNQAVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAA 730
Query 721 LVDFDLPDVNGITLARQLARQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVL 780
LVDFDLPDVNGITLARQLARQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVL
Sbjct 731 LVDFDLPDVNGITLARQLARQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVL 790
Query 781 GQLLAHYLQLQANNDLPLDVSQLNEDAQLMGTEKIHEWLALFTQHALPLLDEIDIARATQ 840
GQLLAHYLQLQANNDLPLDVSQLNEDAQLMGTEKIHEWLALFTQHALPLLDEIDIARATQ
Sbjct 791 GQLLAHYLQLQANNDLPLDVSQLNEDAQLMGTEKIHEWLALFTQHALPLLDEIDIARATQ 850
Query 841 DSEKIKRAAHQLKSSCSSLGMRSASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLNKKD 900
DSEKIKRAAHQLKSSCSSLGMRSASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLNKKD
Sbjct 851 DSEKIKRAAHQLKSSCSSLGMRSASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLNKKD 910
Query 901 LNAI 904
LNAI
Sbjct 911 LNAI 914
>P39453 Sensor protein TorS [Escherichia coli (strain K12)]
Length=914
Score = 1686 bits (4365), Expect = 0.0
Identities = 879/904 (97%), Positives = 894/904 (99%), Gaps = 0/904 (0%)
Query 1 MGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLT 60
MGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLT
Sbjct 11 MGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLT 70
Query 61 SADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGRR 120
SADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVG+R
Sbjct 71 SADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGQR 130
Query 121 LQLRQQQQRLSQQIVAAADEIARLAQGQANNAATSAGATQAGIYDLIEQDQRQAAESALD 180
LQLRQQQQ+LSQQIVAAADEIARLAQGQANNA TSAGATQAGIYDLIEQDQRQAAESALD
Sbjct 131 LQLRQQQQQLSQQIVAAADEIARLAQGQANNATTSAGATQAGIYDLIEQDQRQAAESALD 190
Query 181 RLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI 240
RLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI
Sbjct 191 RLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRI 250
Query 241 EDPGVRAQVATTLTTVSQYSDLLALFQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDT 300
EDPGVRAQVATTLTTVSQYSDLLAL+QQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDT
Sbjct 251 EDPGVRAQVATTLTTVSQYSDLLALYQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDT 310
Query 301 IELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRL 360
IELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRL
Sbjct 311 IELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRL 370
Query 361 LDGDIDSPFPETAGVRELDTIGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEH 420
LDGDIDSPFPETAGVRELDTIGRLMDAFRS+VHALNRHREQLAAQVKARTAELQELVIEH
Sbjct 371 LDGDIDSPFPETAGVRELDTIGRLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEH 430
Query 421 RQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGE 480
RQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGE
Sbjct 431 RQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGE 490
Query 481 SLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADD 540
SLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADD
Sbjct 491 SLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADD 550
Query 541 VPTALMGDPRRIRQVITNLLSNALRFTDEGQIVLRSRTDGEQWLVEVEDSGCGIDPAKLA 600
+P ALMGDPRRIRQVITNLLSNALRFTDEG I+LRSRTDGEQWLVEVEDSGCGIDPAKLA
Sbjct 551 MPCALMGDPRRIRQVITNLLSNALRFTDEGYIILRSRTDGEQWLVEVEDSGCGIDPAKLA 610
Query 601 EIFQPFIQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP 660
EIFQPF+QVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP
Sbjct 611 EIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVP 670
Query 661 KTVNQAVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAA 720
KTVNQAVRLDGLRLLLIEDNPLTQRIT+EML TSGAQ+VA+GNAAQALETLQNSEPFAAA
Sbjct 671 KTVNQAVRLDGLRLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAA 730
Query 721 LVDFDLPDVNGITLARQLARQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVL 780
LVDFDLPD++GITLARQLA+QYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVL
Sbjct 731 LVDFDLPDIDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVL 790
Query 781 GQLLAHYLQLQANNDLPLDVSQLNEDAQLMGTEKIHEWLALFTQHALPLLDEIDIARATQ 840
GQLLAHYLQLQ NND LDVSQLNEDAQLMGTEKIHEWL LFTQHALPLLDEIDIARA+Q
Sbjct 791 GQLLAHYLQLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQ 850
Query 841 DSEKIKRAAHQLKSSCSSLGMRSASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLNKKD 900
DSEKIKRAAHQLKSSCSSLGM ASQLCAQLEQQPLSAPLPHEEITRSVAALEAWL+KKD
Sbjct 851 DSEKIKRAAHQLKSSCSSLGMHIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKD 910
Query 901 LNAI 904
LNAI
Sbjct 911 LNAI 914
>Q9HUI3 Sensor histidine kinase AruS [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG
12228 / 1C / PRS 101 / PAO1)]
Length=998
Score = 231 bits (588), Expect = 4e-66
Identities = 192/591 (32%), Positives = 282/591 (48%), Gaps = 53/591 (9%)
Query 319 GQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVREL 378
G SLL +G LC L + L + + VTR L ++ + +GD+ P RE
Sbjct 393 GLASLLWMGSF-LCGLAVALSWLFHSLVTRHLWRMSEFAGHIAEGDLQQPLRLDKVDRER 451
Query 379 DTIGRLMDAFRSSVHAL-------NRHREQLAAQVKARTAELQELVIEHRQARAEAEKAS 431
D I + A AL + R++L QV+ RTA L R+A+ +AE A
Sbjct 452 DEIDAVAAALEDMRQALRTDRRRRDADRDELRRQVERRTASL-------RRAKDQAEAAD 504
Query 432 QAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILD 491
+AKS FLA MSHEIRTPL GILG A+LL + R LRA+ +GE LL ILN++L
Sbjct 505 RAKSRFLATMSHEIRTPLNGILGMAELLREASLGERDRQRLRALATAGEGLLAILNEVLH 564
Query 492 YSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRR 551
++ +E D F R LLE L L+ R + RL + V G +
Sbjct 565 FARLEEAPDVPEAVD--FSLRSLLEDVLTLLEPRARENATRLDLWLDPQVHDGHRGAEQF 622
Query 552 IRQVITNLLSNALRFTDEGQIVLR----SRTDGEQWL-VEVEDSGCGIDPAKLAEIFQPF 606
+RQV+TNLL NA++FT+ G++ +R +R+ G + L + V D G GI IF+ F
Sbjct 623 LRQVLTNLLGNAVKFTEAGEVRVRVERLARSAGSERLRLSVADDGIGIPEEMRERIFERF 682
Query 607 IQ----VSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKT 662
Q V+ + GGTGLGL IS RL +A+GG + S GS F + L A A +
Sbjct 683 TQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVGQGSTFWFEIEL--ALASLSGA 740
Query 663 VNQAVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALV 722
A + L +LL+ED L + + +L G +V+ +A AL L F L+
Sbjct 741 TPPAASVSALEVLLVEDVALNREVAQGLLERDGHRVMLAEDAGPAL-ALCRQRRFDLILL 799
Query 723 DFDLPDVNGITLARQLARQYPSL----VLIGFSAHVIDETLRQRTSSLFRGIIPKPVP-- 776
D LP + G+ L + RQ L + F+A + + +R+ ++ +G++ KP+
Sbjct 800 DMHLPGMAGLELCAGIRRQLDGLNRATPIFAFTASIQPDMVRRYFAAGMQGVLGKPLRMD 859
Query 777 --REVLGQLLAHYLQLQANNDLPLDVSQLNEDAQLMGTEKIHEWLALF---TQHALPL-- 829
R LG++ L D LD L +L+G K+ L LPL
Sbjct 860 ELRRALGEVGTSVPALAV--DAALDRQMLETHRRLLGRHKLAGLLGNLLGSLDEQLPLLA 917
Query 830 --LDEIDIARATQDSEKIKRAAHQLKSSCSSLGMRSASQLCAQLEQQPLSA 878
LD+ D+A A AH+L SC S+G+ + +LE++ L A
Sbjct 918 EALDQADLAEAA-------NIAHRLSGSCHSMGLVALGAGLGELEREALGA 961
>P48027 Sensor protein GacS [Pseudomonas syringae pv. syringae]
Length=907
Score = 229 bits (583), Expect = 8e-66
Identities = 176/520 (34%), Positives = 260/520 (50%), Gaps = 48/520 (9%)
Query 292 SEVSQLVDTIELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLA 351
+E L+ +EL H L R ++ LLL + L + R+ R++ P++
Sbjct 133 AEADTLLGWVELEISHNGTLLR--GYRSLFASLLLILTGLAFTATLAVRMS-RTINGPMS 189
Query 352 EQTQALQRLLDGDIDSPFPETAGVRELDT----IGRLMDAFRSSVHALNRHREQLAAQVK 407
+ QA+ +L DG++++ P G RELD I R+ +++ L +Q V+
Sbjct 190 QIKQAVSQLKDGNLETRLPPL-GSRELDELASGINRMAATLQNAQEELQLSIDQATEDVR 248
Query 408 ARTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNA 467
++ IE AR EA +AS+ KS FLA MSHEIRTPL GILG LL +
Sbjct 249 QNLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTPR 308
Query 468 QRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVK 527
Q D L I S ++LL+I+N+ILD+S IEAG + + + PF R LL+ TL +++
Sbjct 309 QFDYLGTIEKSADNLLSIINEILDFSKIEAG--KLVLDNIPFNLRDLLQDTLTILAPAAH 366
Query 528 GRPIRLATAIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGQIVLRSRTDGE-----Q 582
+ + L + + D P AL GDP R+RQ++TNL+SNA++FT EG IV R+ + E Q
Sbjct 367 AKQLELVSLVYRDTPLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQ 426
Query 583 WLVEVEDSGCGIDPAKLAEIFQPFIQ----VSGKRGGTGLGLTISSRLAQAMGGELSATS 638
+ V+D+G G+ + +FQ F Q +S + GGTGLGL IS RL + MGGE+ S
Sbjct 427 LRISVQDTGIGLSSQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDS 486
Query 639 TPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQV 698
TP GS F + L L A +++N + L GLR ++E + L ++ L G Q
Sbjct 487 TPGEGSEFWISLKLPKAREDKEESLN--IPLGGLRAAVLEHHDLARQALEHQLEDCGLQT 544
Query 699 VAIGNAAQALETLQNSEPFAAALVDFDLPDVNGITLARQLARQYPSLVLIGFSAHVIDET 758
+ N LE L +NG+T A + VL + + E
Sbjct 545 IVFNN----LENL-----------------LNGVTAAHETPAAIDLAVLGVTALEISPER 583
Query 759 LRQRTSSL----FRGIIPKPVPREVLGQLLAH--YLQLQA 792
LRQ L + ++ P L QL H Y QLQA
Sbjct 584 LRQHIWDLENLNCKVMVLCPTTEHALFQLAVHDVYTQLQA 623
Score = 57.4 bits (137), Expect = 4e-11
Identities = 61/247 (25%), Positives = 103/247 (42%), Gaps = 28/247 (11%)
Query 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDVNG- 731
R+L ++DNP + +L GA+VVA+ A+ +Q E F L+D +P ++G
Sbjct 658 RVLCVDDNPANLLLVQTLLEDMGAEVVAVEGGYAAVNAVQ-QEAFDLVLMDVQMPGMDGR 716
Query 732 ----ITLARQLARQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHY 787
A + R SL ++ +AH + R S + KP+ L Q++ +
Sbjct 717 QATEAIRAWEAERNQSSLPIVALTAHAMANEKRSLLQSGMDDYLTKPISERQLAQVVLKW 776
Query 788 LQLQANNDLP--------LDVSQL---NEDAQLMGTEKIH---EWLALFTQHALPLLDEI 833
L N P + V L +E+ + K + LA+ + I
Sbjct 777 TGLALRNPAPERQNEALEVHVGPLVLDHEEGLRLAAGKADLAADMLAMLLASLDADREAI 836
Query 834 DIARATQDSEKIKRAAHQLKSS---CSSLGMRSASQLCAQLEQQPLSAPLPHE---EITR 887
+ARA QD + H+L + C +RSA Q L +Q +AP E ++ +
Sbjct 837 RVARANQDVHALIERIHRLHGATRYCGVPQLRSACQRAETLLKQ--NAPHTEEALNDLDK 894
Query 888 SVAALEA 894
++ LEA
Sbjct 895 AIIRLEA 901
Score = 20.4 bits (41), Expect = 8.1
Identities = 23/111 (21%), Positives = 50/111 (45%), Gaps = 21/111 (19%)
Query 134 IVAAADEIARLAQGQANNAATSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQM 193
+V +E RLA G+A+ AA A + + D+ + ++ + +E ++++
Sbjct 800 LVLDHEEGLRLAAGKADLAADMLAMLLASL----DADREAIRVARANQDVHALIERIHRL 855
Query 194 N---------ELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQR 235
+ +LR + R + + +++NAP E+ LN+ K + R
Sbjct 856 HGATRYCGVPQLRSACQRAETL--------LKQNAPHTEEALNDLDKAIIR 898
>Q9F8D7 Sensor histidine kinase GacS [Pseudomonas protegens (strain
DSM 19095 / LMG 27888 / CFBP 6595 / CHA0)]
Length=917
Score = 213 bits (542), Expect = 2e-60
Identities = 154/434 (35%), Positives = 228/434 (53%), Gaps = 32/434 (7%)
Query 293 EVSQLVDTIELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAE 352
E +L+ +EL H L R ++ LLL L L+ R+ R++ PL +
Sbjct 144 ESDRLLGWVELELSHSGMLLR--GYRSLFASLLLIAAGLAGTALLAVRMG-RTINNPLTQ 200
Query 353 QTQALQRLLDGDIDSPFPETAGVRELDT----IGRLMDAFRSSVHALNRHREQLAAQVKA 408
QA+ +L DG++++ P G +ELD I R+ +++ L +Q V+
Sbjct 201 IKQAVAQLKDGNLETRLPPL-GSQELDELASGINRMASTLQNAQEELQHSIDQATEDVRQ 259
Query 409 RTAELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQ 468
++ IE AR EA +AS+ KS FLA MSHEIRTPL GILG LL + Q
Sbjct 260 NLETIEIQNIELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQ 319
Query 469 RDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKG 528
D L I S +SLL I+N+ILD+S IEAG + + PF R LL+ TL +++
Sbjct 320 LDYLGTIEKSADSLLGIINEILDFSKIEAG--KLVLDSIPFNLRDLLQDTLTILAPAAHA 377
Query 529 RPIRLATAIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGQIVLRS-----RTDGEQW 583
+ + L + + D P +L+GDP R++Q++TNL+SNA++FT EG IV R+ D Q
Sbjct 378 KQLELVSLVYRDTPLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEEEHEDSVQL 437
Query 584 LVEVEDSGCGIDPAKLAEIFQPFIQ----VSGKRGGTGLGLTISSRLAQAMGGELSATST 639
+ ++D+G G+ + +FQ F Q +S + GGTGLGL IS RL + MGGE+ ST
Sbjct 438 RISIQDTGIGLSNQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDST 497
Query 640 PEVGSCFCLRLPLRVATAPVPKTVNQAVRLD-----GLRLLLIEDNPLTQRITVEMLNTS 694
P GS F + L L PKT + A L G R+ ++E++ L ++ L
Sbjct 498 PGEGSEFWISLNL-------PKTRDDAEDLPGPPLLGRRVAVLENHELARQALQHQLEDC 550
Query 695 GAQVVAIGNAAQAL 708
G +V N +AL
Sbjct 551 GLEVTPF-NTLEAL 563
Score = 60.5 bits (145), Expect = 4e-12
Identities = 56/246 (23%), Positives = 103/246 (42%), Gaps = 26/246 (11%)
Query 673 RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDVNGI 732
R+L ++DNP + +L GA+V+A+ N AL +Q +EPF ++D +P ++G
Sbjct 668 RVLCVDDNPANLLLIQTLLEDMGAKVLAVDNGYAALNAIQ-TEPFDLVMMDVQMPGMDG- 725
Query 733 TLARQLARQYPS------LVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAH 786
+ + RQ+ S L ++ +AH + R S + KP+ L Q++
Sbjct 726 RQSTEAIRQWESERHGTPLPIVALTAHAMANEKRALLQSGMDDYLTKPISERQLAQVVLK 785
Query 787 YLQLQANN----------DLPLDVSQLNEDAQLM----GTEKIHEWLALFTQHALPLLDE 832
+ L N +L L++ L++D L + + LA+ +
Sbjct 786 WTGLALRNQGPERASERPELGLELQVLDQDEGLRLAAGKADLAADMLAMLLASLDADREA 845
Query 833 IDIARATQDSEKIKRAAHQLKSSCSSLGMRSASQLCAQ----LEQQPLSAPLPHEEITRS 888
I ARA D + H+L + G+ C + L+Q+ A +E+ +
Sbjct 846 IKAARAANDQNALIERVHRLHGATRYCGVPQLRAACQRSETLLKQEDAKAFAALDELDHA 905
Query 889 VAALEA 894
+ L A
Sbjct 906 IGRLAA 911
Score = 22.7 bits (47), Expect = 1.6
Identities = 33/115 (29%), Positives = 53/115 (46%), Gaps = 16/115 (14%)
Query 75 LTAQSL--KINALLQALREQGFDTTAIEQQEQEI-----SRSLRQQG-ELVGRRLQLRQQ 126
LTA ++ + ALLQ+ + E+Q ++ +LR QG E R +L +
Sbjct 749 LTAHAMANEKRALLQSGMDDYLTKPISERQLAQVVLKWTGLALRNQGPERASERPELGLE 808
Query 127 QQRLSQQIVAAADEIARLAQGQANNAATSAGATQAGIYDLIEQDQRQAAESALDR 181
Q L Q DE RLA G+A+ AA A + +++ +AA +A D+
Sbjct 809 LQVLDQ------DEGLRLAAGKADLAADMLAMLLASLD--ADREAIKAARAANDQ 855
>P0C0F6 Sensory/regulatory protein RpfC [Xanthomonas campestris
pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 /
LMG 568 / P 25)]
Length=726
Score = 200 bits (509), Expect = 6e-57
Identities = 153/508 (30%), Positives = 243/508 (48%), Gaps = 64/508 (13%)
Query 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGES 481
+A EA A+QAKS FLA MSHE RTPL G+ G ++LA Q++ L I S S
Sbjct 177 RAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTRLDAEQKECLNTIQASARS 236
Query 482 LLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDV 541
LL+++ ++LD SAIEAG + + F R ++ S ++ + +GR + T +ADDV
Sbjct 237 LLSLVEEVLDISAIEAG--KIRIDRRDFSLREMIGSVNLILQPQARGRRLEYGTQVADDV 294
Query 542 PTALMGDPRRIRQVITNLLSNALRFTDEGQIVLR------SRTDGEQWLVEVEDSGCGID 595
P L GD +RQV+ NL+ NA++FT+ G ++LR S D + +VED+G G+
Sbjct 295 PDLLKGDTAHLRQVLLNLVGNAVKFTEHGHVLLRVTRVSGSAEDAVRLRFDVEDTGIGVP 354
Query 596 PAKLAEIFQPFIQ----VSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRL- 650
+F+ F Q +S + GTGLG TI+ L +AMGG + GS F L
Sbjct 355 MDMRPRLFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGFKENQPSGSVFWFELP 414
Query 651 -----PLRVATAPVP---------------------KTVNQAVRLDGLRLLLIEDNPLTQ 684
PL+ +T VP + R+ +R+L+ +D+ +
Sbjct 415 MAIGEPLKSSTVRVPTGALVDAPEELESSNIIAFSNPFLRHRARVRSMRMLVADDHEANR 474
Query 685 RITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDVNGITLARQL------ 738
+ +L +G +V+ + A Q L+ + E + A +VD +P +NG+ + +QL
Sbjct 475 MVLQRLLEKAGHKVLCVNGAEQVLDAMA-EEDYDAVIVDLHMPGMNGLDMLKQLRVMQAS 533
Query 739 -ARQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHY---------- 787
R P +VL SA V E +R + R + KPV L LA
Sbjct 534 GMRYTPVVVL---SADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVSTRQLATP 590
Query 788 ---LQLQANNDLPLDVSQLNEDAQL-MGTEKIHEWLALFTQHALPLLDEIDIARATQDSE 843
+Q+ + + LD S L+E A L MG E +++ A + +I+ D E
Sbjct 591 ATTVQVATSFEGVLDSSVLDELAALGMGEEFERQFVRQCLDDAQNCVGDIERDGTCSDWE 650
Query 844 KIKRAAHQLKSSCSSLGMRSASQLCAQL 871
+++ +AH L+ S+LG+ + +L
Sbjct 651 QLRESAHALRGVASNLGLAQVASSGGEL 678
Score = 21.9 bits (45), Expect = 2.7
Identities = 15/52 (29%), Positives = 27/52 (52%), Gaps = 1/52 (2%)
Query 172 RQAAESALDRLIDIDLEYV-NQMNELRLSALRVQQMVMNLGLEQIQKNAPTL 222
RQ + A + + DI+ + + +LR SA ++ + NLGL Q+ + L
Sbjct 627 RQCLDDAQNCVGDIERDGTCSDWEQLRESAHALRGVASNLGLAQVASSGGEL 678
Score = 21.6 bits (44), Expect = 3.5
Identities = 21/65 (32%), Positives = 33/65 (51%), Gaps = 4/65 (6%)
Query 86 LQALREQGFDTTAIEQQEQEISR---SLRQQGELVGRRLQLRQQQQRLSQQIVAAADEIA 142
L +L E+ D +AIE + I R SLR+ V LQ + + +RL + AD++
Sbjct 237 LLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRRL-EYGTQVADDVP 295
Query 143 RLAQG 147
L +G
Sbjct 296 DLLKG 300
>P0C0F7 Sensory/regulatory protein RpfC [Xanthomonas campestris
pv. campestris (strain 8004)]
Length=726
Score = 200 bits (508), Expect = 8e-57
Identities = 153/508 (30%), Positives = 243/508 (48%), Gaps = 64/508 (13%)
Query 422 QARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGES 481
+A EA A+QAKS FLA MSHE RTPL G+ G ++LA Q++ L I S S
Sbjct 177 RAVREARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATTRLDAEQKECLNTIQASARS 236
Query 482 LLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDV 541
LL+++ ++LD SAIEAG + + F R ++ S ++ + +GR + T +ADDV
Sbjct 237 LLSLVEEVLDISAIEAG--KIRIDRRDFSLREMIGSVNLILQPQARGRRLEYGTQVADDV 294
Query 542 PTALMGDPRRIRQVITNLLSNALRFTDEGQIVLR------SRTDGEQWLVEVEDSGCGID 595
P L GD +RQV+ NL+ NA++FT+ G ++LR S D + +VED+G G+
Sbjct 295 PDLLKGDTAHLRQVLLNLVGNAVKFTEHGHVLLRVTRVSGSAEDAVRLRFDVEDTGIGVP 354
Query 596 PAKLAEIFQPFIQ----VSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRL- 650
+F+ F Q +S + GTGLG TI+ L +AMGG + GS F L
Sbjct 355 MDMRPRLFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGFKENQPSGSVFWFELP 414
Query 651 -----PLRVATAPVP---------------------KTVNQAVRLDGLRLLLIEDNPLTQ 684
PL+ +T VP + R+ +R+L+ +D+ +
Sbjct 415 MAIGEPLKSSTVRVPTGALVDAPEELESSNIIAFSNPFLRHRARVRSMRMLVADDHEANR 474
Query 685 RITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDVNGITLARQL------ 738
+ +L +G +V+ + A Q L+ + E + A +VD +P +NG+ + +QL
Sbjct 475 MVLQRLLEKAGHKVLCVNGAEQVLDAMA-EEDYDAVIVDLHMPGMNGLDMLKQLRVMQAS 533
Query 739 -ARQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHY---------- 787
R P +VL SA V E +R + R + KPV L LA
Sbjct 534 GMRYTPVVVL---SADVTPEAIRACEQAGARAFLAKPVLAAKLLDTLADLAVSTRQLATP 590
Query 788 ---LQLQANNDLPLDVSQLNEDAQL-MGTEKIHEWLALFTQHALPLLDEIDIARATQDSE 843
+Q+ + + LD S L+E A L MG E +++ A + +I+ D E
Sbjct 591 ATTVQVATSFEGVLDSSVLDELAALGMGEEFERQFVRQCLDDAQNCVGDIERDGTCSDWE 650
Query 844 KIKRAAHQLKSSCSSLGMRSASQLCAQL 871
+++ +AH L+ S+LG+ + +L
Sbjct 651 QLRESAHALRGVASNLGLAQVASSGGEL 678
Score = 22.7 bits (47), Expect = 1.6
Identities = 28/128 (22%), Positives = 54/128 (42%), Gaps = 3/128 (2%)
Query 98 AIEQQEQEISRSLRQQGELVGRRLQLRQQQQRLSQQIVAAAD--EIARLAQGQANNAATS 155
AI EQ +R+ + L + L ++Q+ A ++A +G +++
Sbjct 551 AIRACEQAGARAFLAKPVLAAKLLDTLADLAVSTRQLATPATTVQVATSFEGVLDSSVLD 610
Query 156 AGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYV-NQMNELRLSALRVQQMVMNLGLEQ 214
A + Q RQ + A + + DI+ + + +LR SA ++ + NLGL Q
Sbjct 611 ELAALGMGEEFERQFVRQCLDDAQNCVGDIERDGTCSDWEQLRESAHALRGVASNLGLAQ 670
Query 215 IQKNAPTL 222
+ + L
Sbjct 671 VASSGGEL 678
Score = 21.6 bits (44), Expect = 3.5
Identities = 21/65 (32%), Positives = 33/65 (51%), Gaps = 4/65 (6%)
Query 86 LQALREQGFDTTAIEQQEQEISR---SLRQQGELVGRRLQLRQQQQRLSQQIVAAADEIA 142
L +L E+ D +AIE + I R SLR+ V LQ + + +RL + AD++
Sbjct 237 LLSLVEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRRL-EYGTQVADDVP 295
Query 143 RLAQG 147
L +G
Sbjct 296 DLLKG 300
>P58363 Aerobic respiration control sensor protein ArcB [Escherichia
coli O157:H7]
Length=778
Score = 200 bits (509), Expect = 1e-56
Identities = 145/513 (28%), Positives = 254/513 (50%), Gaps = 35/513 (7%)
Query 417 VIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAIT 476
+ E ++ + E+AS+ K+ F++ +SHE+RTPL GI+G +++L D Q L+ I
Sbjct 266 ITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIH 325
Query 477 DSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATA 536
S +L I NDI+D +E + V + ++P + L L + + + + +R
Sbjct 326 VSAVTLGNIFNDIIDMDKMER--RKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLE 383
Query 537 IADDVPTALMGDPRRIRQVITNLLSNALRFTDEGQIVLRSRTD-GEQWLVEVEDSGCGID 595
+P ++ D R+RQ++ NL+SNA++FT +GQ+ +R R D G+ EVEDSG GI
Sbjct 384 PTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIP 443
Query 596 PAKLAEIFQPFIQVSGKRG-----GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRL 650
+L +IF + QV G GTG+GL +S RLA+ MGG+++ TS GS F L +
Sbjct 444 QDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503
Query 651 PLRVATAPVPKTVNQ-AVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALE 709
V ++ + L L +LL+ED L + +L G V ALE
Sbjct 504 HAPSVAEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALE 563
Query 710 TLQNSEPFAAALVDFDLPDVNGITLARQLARQYPS---LVLIGFSAHVIDETLRQRTSSL 766
+ E + L+D LPD+ G+ ++R+L ++YP L+ +A+V+ + ++ ++
Sbjct 564 MFKPGE-YDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDK-QEYLNAG 621
Query 767 FRGIIPKPVPREVLGQLLAHYLQLQ------------ANNDLPLDVSQLNEDAQLMGTEK 814
++ KP+ L ++ + Q + ++ LD+ L + +L+G +
Sbjct 622 MDDVLSKPLSVPALTAMIKKFWDTQDDEESTVTTEENSKSEALLDIPMLEQYLELVGPKL 681
Query 815 IHEWLALFTQHALPLLDEIDIARATQDSEKIKRAAHQLKSSCSSLGMRSASQLCAQLEQQ 874
I + LA+F + ++ ++ QD + I H++K + S+G+R QL Q++
Sbjct 682 ITDGLAVFEKMMPGYVNVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSP 741
Query 875 PLSA---------PLPHEEITRSVAALEAWLNK 898
L A EE V L+AW+ K
Sbjct 742 DLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK 774
Score = 25.0 bits (53), Expect = 0.31
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 14/111 (13%)
Query 334 LILILWRVVYRSVT-RPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSSV 392
L++ W V + SV L E Q L RL+ + +RE D L + ++
Sbjct 63 LLITPWAVYFLSVVVEQLEESRQRLSRLVQ--------KLEEMRERDL--SLNVQLKDNI 112
Query 393 HALNRH---REQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440
LN+ RE+ A+++ +L+ + E + + + E+ S +FL A
Sbjct 113 AQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSFLDA 163
>P0AEC4 Aerobic respiration control sensor protein ArcB [Shigella
flexneri]
Length=778
Score = 200 bits (508), Expect = 1e-56
Identities = 145/513 (28%), Positives = 253/513 (49%), Gaps = 35/513 (7%)
Query 417 VIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAIT 476
+ E ++ + E+AS+ K+ F++ +SHE+RTPL GI+G +++L D Q L+ I
Sbjct 266 ITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIH 325
Query 477 DSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATA 536
S +L I NDI+D +E + V + ++P + L L + + + + +R
Sbjct 326 VSAVTLGNIFNDIIDMDKMER--RKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLE 383
Query 537 IADDVPTALMGDPRRIRQVITNLLSNALRFTDEGQIVLRSRTD-GEQWLVEVEDSGCGID 595
+P ++ D R+RQ++ NL+SNA++FT +GQ+ +R R D G+ EVEDSG GI
Sbjct 384 PTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIP 443
Query 596 PAKLAEIFQPFIQVSGKRG-----GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRL 650
+L +IF + QV G GTG+GL +S RLA+ MGG+++ TS GS F L +
Sbjct 444 QDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503
Query 651 PLRVATAPVPKTVNQ-AVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALE 709
V ++ + L L +LL+ED L + +L G V ALE
Sbjct 504 HAPSVAEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALE 563
Query 710 TLQNSEPFAAALVDFDLPDVNGITLARQLARQYPS---LVLIGFSAHVIDETLRQRTSSL 766
+ E + L+D LPD+ G+ ++R+L ++YP L+ +A+V+ + ++ ++
Sbjct 564 MFKPGE-YDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDK-QEYLNAG 621
Query 767 FRGIIPKPVPREVLGQLLAHYLQLQ------------ANNDLPLDVSQLNEDAQLMGTEK 814
++ KP+ L ++ + Q + ++ LD+ L + +L+G +
Sbjct 622 MDDVLSKPLSVPALTAMIKKFWDTQDDEESTVTTEENSKSEALLDIPMLEQYLELVGPKL 681
Query 815 IHEWLALFTQHALPLLDEIDIARATQDSEKIKRAAHQLKSSCSSLGMRSASQLCAQLEQQ 874
I + LA+F + + ++ QD + I H++K + S+G+R QL Q++
Sbjct 682 ITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSP 741
Query 875 PLSA---------PLPHEEITRSVAALEAWLNK 898
L A EE V L+AW+ K
Sbjct 742 DLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK 774
Score = 25.0 bits (53), Expect = 0.31
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 14/111 (13%)
Query 334 LILILWRVVYRSVT-RPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSSV 392
L++ W V + SV L E Q L RL+ + +RE D L + ++
Sbjct 63 LLITPWAVYFLSVVVEQLEESRQRLSRLVQ--------KLEEMRERDL--SLNVQLKDNI 112
Query 393 HALNRH---REQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440
LN+ RE+ A+++ +L+ + E + + + E+ S +FL A
Sbjct 113 AQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSFLDA 163
>P0AEC3 Aerobic respiration control sensor protein ArcB [Escherichia
coli (strain K12)]
Length=778
Score = 200 bits (508), Expect = 1e-56
Identities = 145/513 (28%), Positives = 253/513 (49%), Gaps = 35/513 (7%)
Query 417 VIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAIT 476
+ E ++ + E+AS+ K+ F++ +SHE+RTPL GI+G +++L D Q L+ I
Sbjct 266 ITERKRYQDALERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIH 325
Query 477 DSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATA 536
S +L I NDI+D +E + V + ++P + L L + + + + +R
Sbjct 326 VSAVTLGNIFNDIIDMDKMER--RKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLE 383
Query 537 IADDVPTALMGDPRRIRQVITNLLSNALRFTDEGQIVLRSRTD-GEQWLVEVEDSGCGID 595
+P ++ D R+RQ++ NL+SNA++FT +GQ+ +R R D G+ EVEDSG GI
Sbjct 384 PTLPLPHQVITDGTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIP 443
Query 596 PAKLAEIFQPFIQVSGKRG-----GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRL 650
+L +IF + QV G GTG+GL +S RLA+ MGG+++ TS GS F L +
Sbjct 444 QDELDKIFAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503
Query 651 PLRVATAPVPKTVNQ-AVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALE 709
V ++ + L L +LL+ED L + +L G V ALE
Sbjct 504 HAPSVAEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALE 563
Query 710 TLQNSEPFAAALVDFDLPDVNGITLARQLARQYPS---LVLIGFSAHVIDETLRQRTSSL 766
+ E + L+D LPD+ G+ ++R+L ++YP L+ +A+V+ + ++ ++
Sbjct 564 MFKPGE-YDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDK-QEYLNAG 621
Query 767 FRGIIPKPVPREVLGQLLAHYLQLQ------------ANNDLPLDVSQLNEDAQLMGTEK 814
++ KP+ L ++ + Q + ++ LD+ L + +L+G +
Sbjct 622 MDDVLSKPLSVPALTAMIKKFWDTQDDEESTVTTEENSKSEALLDIPMLEQYLELVGPKL 681
Query 815 IHEWLALFTQHALPLLDEIDIARATQDSEKIKRAAHQLKSSCSSLGMRSASQLCAQLEQQ 874
I + LA+F + + ++ QD + I H++K + S+G+R QL Q++
Sbjct 682 ITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQSP 741
Query 875 PLSA---------PLPHEEITRSVAALEAWLNK 898
L A EE V L+AW+ K
Sbjct 742 DLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK 774
Score = 25.0 bits (53), Expect = 0.31
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 14/111 (13%)
Query 334 LILILWRVVYRSVT-RPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSSV 392
L++ W V + SV L E Q L RL+ + +RE D L + ++
Sbjct 63 LLITPWAVYFLSVVVEQLEESRQRLSRLVQ--------KLEEMRERDL--SLNVQLKDNI 112
Query 393 HALNRH---REQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA 440
LN+ RE+ A+++ +L+ + E + + + E+ S +FL A
Sbjct 113 AQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSFLDA 163
>Q54YZ9 Hybrid signal transduction histidine kinase J [Dictyostelium
discoideum]
Length=2062
Score = 188 bits (477), Expect = 1e-51
Identities = 127/331 (38%), Positives = 181/331 (55%), Gaps = 26/331 (8%)
Query 413 LQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDL 472
L+E +++ A+ AE AS+AKS F+A MSHEIRTP+ GI+G L D QR+ L
Sbjct 1326 LKETTLKNTLAKETAEAASRAKSDFMANMSHEIRTPMNGIIGMTDLTLDTELTAEQREYL 1385
Query 473 RAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIR 532
+ S SLLTI+NDILD+S IEAG + + F R L L+ +S R + I
Sbjct 1386 SMVQSSAGSLLTIINDILDFSKIEAG--RLELDQAEFSLRAHLYDALKTLSWRAHQKCIE 1443
Query 533 LATAIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGQI-----VLRSRTDGEQWL-VE 586
L IA DVP +L+GDP R+RQ++ NL+ NA++FT +G++ V +S + GE L
Sbjct 1444 LVCDIASDVPDSLIGDPGRLRQIVNNLVGNAIKFTSQGEVDLVVKVEKSLSCGEVVLKFS 1503
Query 587 VEDSGCGIDPAKLAEIFQPFIQVSG----KRGGTGLGLTISSRLAQAMGGELSATSTPEV 642
V D+G GI KL IF+ F Q G + GGTGLGLTIS+RL + M G+LS S
Sbjct 1504 VIDTGIGIPKDKLHLIFEAFSQADGSITRRYGGTGLGLTISTRLVELMKGKLSVVSKSGK 1563
Query 643 GSCFCLRLPLRVATAPVPKTVNQ---AVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVV 699
GS F TA P + NQ +L+ + L+++DN T ++ ++L+ G
Sbjct 1564 GSTF-------EFTAQFPTSPNQLPLTEKLNDVHTLIVDDNKSTLKVLKQILSEFGITSE 1616
Query 700 AIGNAAQA----LETLQNSEPFAAALVDFDL 726
N A ++ + ++PF VD L
Sbjct 1617 VSNNTQDAFNMIVKATKTTKPFEFIFVDAQL 1647
Score = 42.7 bits (99), Expect = 1e-06
Identities = 38/143 (27%), Positives = 63/143 (44%), Gaps = 14/143 (10%)
Query 656 TAPVPKTVNQAVRLDGL---RLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQ 712
T +PK + + ++L +LL EDN + QR+ + +L G +V N QA+ + Q
Sbjct 1710 TRQIPKQLCKKIQLTSEIFGDILLAEDNAVNQRLAIRLLEKFGHRVQLAENGLQAVASSQ 1769
Query 713 NSEPFAAALVDFDLPDVNGITLARQLAR----QYPSLVLIGFSAHVIDETLRQRTSSLFR 768
F L+D +P G Q+ + Q +I +AH + R R L
Sbjct 1770 -LRKFDLILMDVQMPHCGGFEATAQIRKREHEQGIHTPIIAMTAHAL---ARDRVKCLEA 1825
Query 769 GI---IPKPVPREVLGQLLAHYL 788
G+ I KP+ + L ++ YL
Sbjct 1826 GMDDYISKPINPDQLKAMIEKYL 1848
Score = 25.4 bits (54), Expect = 0.25
Identities = 16/68 (24%), Positives = 31/68 (46%), Gaps = 4/68 (6%)
Query 96 TTAIEQQEQEISRSLRQQGELVGRRLQLRQQQQRLSQQIVAAADEIARLAQGQANNAATS 155
TTA+ + + + ++ QGE+ LQL+ + QQ+ + E+ R+A+
Sbjct 462 TTAVAEGDLSKNITIDAQGEI----LQLKNTINTMVQQLKGFSSEVTRVAREVGTKGILG 517
Query 156 AGATQAGI 163
A G+
Sbjct 518 GQAEVTGV 525
Score = 24.3 bits (51), Expect = 0.56
Identities = 20/84 (24%), Positives = 35/84 (42%), Gaps = 8/84 (10%)
Query 96 TTAIEQQEQEISRSLRQQGELVGRRLQLRQQQQRLSQQIVAAADEIARLAQGQANNAATS 155
TTA+ + + S+ QGE+ LQL+ + Q+ + + E+ R+++
Sbjct 832 TTAVAEGDLSKQVSINAQGEI----LQLKNTINTMVDQLKSFSSEVTRVSREVGTEGILG 887
Query 156 AGATQAGI----YDLIEQDQRQAA 175
A G+ DL E AA
Sbjct 888 GQAQVKGVGGVWKDLTENVNTMAA 911
Score = 23.9 bits (50), Expect = 0.73
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 4/68 (6%)
Query 96 TTAIEQQEQEISRSLRQQGELVGRRLQLRQQQQRLSQQIVAAADEIARLAQGQANNAATS 155
TTA+ + + + ++ QGE+ LQL+ + QQ+ + + E+ R+++
Sbjct 646 TTAVAKGDLSKNITIDAQGEI----LQLKNTINTMVQQLKSFSSEVTRVSREVGTEGILG 701
Query 156 AGATQAGI 163
A G+
Sbjct 702 GQAQVEGV 709
Score = 20.4 bits (41), Expect = 8.4
Identities = 14/68 (21%), Positives = 30/68 (44%), Gaps = 4/68 (6%)
Query 96 TTAIEQQEQEISRSLRQQGELVGRRLQLRQQQQRLSQQIVAAADEIARLAQGQANNAATS 155
TTA+ + + ++ +GE+ LQL+ + QQ+ + E+ R+++
Sbjct 924 TTAVACGDLSKNITIDAKGEI----LQLKNTINTMVQQLKGFSSEVTRVSREVGTEGILG 979
Query 156 AGATQAGI 163
A G+
Sbjct 980 GQAQVEGV 987
>P0AEC5 Signal transduction histidine-protein kinase BarA [Escherichia
coli (strain K12)]
Length=918
Score = 186 bits (471), Expect = 2e-51
Identities = 137/433 (32%), Positives = 224/433 (52%), Gaps = 31/433 (7%)
Query 290 FSSEVSQLVDTIELRNQHGLAHLE---KASARGQYSLLLLGMVSL--CALILIL--WRVV 342
+S + S D +N G LE K+ QY + + V + C I ++ WR++
Sbjct 140 YSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLM 199
Query 343 YRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSSVHALNRHREQL 402
R VT P+ + R+ G +DS E + ELD L + S +L + E++
Sbjct 200 -RDVTGPIRNMVNTVDRIRRGQLDSRV-EGFMLGELDM---LKNGINSMAMSLAAYHEEM 254
Query 403 AAQVKARTAELQELV-------IEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGT 455
+ T++L+E + +E A+ A++A++ KS FLA MSHE+RTPL G++G
Sbjct 255 QHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGF 314
Query 456 AQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLL 515
+L QRD L I S +LL I+ND+LD+S +EAG + + PF R L
Sbjct 315 TRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAG--KLILESIPFPLRSTL 372
Query 516 ESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGQIVL- 574
+ + L++ + + L I DVP ++GDP R++Q+ITNL+ NA++FT+ G I +
Sbjct 373 DEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDIL 432
Query 575 ---RSRTDGE-QWLVEVEDSGCGIDPAKLAEIFQPFIQ----VSGKRGGTGLGLTISSRL 626
R+ ++ + Q V++ D+G GI + +FQ F Q +S + GGTGLGL I+ +L
Sbjct 433 VEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKL 492
Query 627 AQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRI 686
MGG++S S P GS F + L + + + + L G RL +E N +
Sbjct 493 VNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQC-LAGKRLAYVEPNSAAAQC 551
Query 687 TVEMLNTSGAQVV 699
T+++L+ + +VV
Sbjct 552 TLDILSETPLEVV 564
Score = 47.8 bits (112), Expect = 3e-08
Identities = 49/221 (22%), Positives = 88/221 (40%), Gaps = 21/221 (10%)
Query 672 LRLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDVNG 731
+ ++ ++DNP ++ +L V + QA+E + PF L+D +PD++G
Sbjct 668 MTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQM-PFDLILMDIQMPDMDG 726
Query 732 IT---LARQLARQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYL 788
I L QL Q + V I +AH + + + + KP+ E L LL Y
Sbjct 727 IRACELIHQLPHQQQTPV-IAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYK 785
Query 789 ---------------QLQANNDLPLDVSQLNEDAQLMGTEKIHEWLALFTQHALPLLDEI 833
++ N + LD QL T+ + L + + +++
Sbjct 786 PGSGISSRVVTPEVNEIVVNPNATLDW-QLALRQAAGKTDLARDMLQMLLDFLPEVRNKV 844
Query 834 DIARATQDSEKIKRAAHQLKSSCSSLGMRSASQLCAQLEQQ 874
+ ++ E + H+L SC G+ LC +EQQ
Sbjct 845 EEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQ 885
>P40330 Virulence sensor protein BvgS [Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253)]
Length=1238
Score = 183 bits (464), Expect = 3e-50
Identities = 147/402 (37%), Positives = 212/402 (53%), Gaps = 37/402 (9%)
Query 412 ELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPA-LNAQRD 470
E EL+ E A+ A+ A++AK+ FLA MSHEIRTP+ I+G +L PA R
Sbjct 698 ERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEPDRQ 757
Query 471 DLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSG--RVKG 528
++ DS SLL ++ DILD + IEAG ++ R L E ++L G R KG
Sbjct 758 SIQVAYDSARSLLELIGDILDIAKIEAG--KFDLAPVRTALRALPEGAIRLFDGLARQKG 815
Query 529 RPIRLATAI--ADDVPTALMGDPRRIRQVITNLLSNALRFTDEGQIVL--RSRTDGEQWL 584
+ L T I DDV + DP R++QV++NL+ NA++FT EGQ+VL +R DGE
Sbjct 816 IELVLKTDIVGVDDV----LIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAAH 871
Query 585 VE--VEDSGCGIDPAKLAEIFQPFIQV-----SGKRGGTGLGLTISSRLAQAMGGELSAT 637
V+ V D+GCGI A ++F+PF QV +G GTGLGL+IS RL + MGG L
Sbjct 872 VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMR 931
Query 638 STPEVGSCFCLRLPL----RVATAPVPKTVNQAVRLD---GLRLLLIEDNPLTQRITVEM 690
S P VG+ + L L + A A P QA LR+L+++D+ + +
Sbjct 932 SAPGVGTTVSVDLRLTMIEKSAQATPPAAAAQATPSKPQVSLRVLVVDDHKPNLMLLRQQ 991
Query 691 LNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDVNGITLARQL--ARQYPS---- 744
L+ G +VVA + AL L + F + D ++P +NG LAR++ A P
Sbjct 992 LDYLGQRVVAADSGEAAL-ALWHEHAFDVVITDCNMPGINGYELARRIRAAEAAPGYGRT 1050
Query 745 -LVLIGFSAHV-IDETLRQRTSSLFRGIIPKPVPREVLGQLL 784
+L GF+A +DE R R + + + KP+ + L Q L
Sbjct 1051 RCILFGFTASAQMDEAQRCRAAGM-DDCLFKPIGVDALRQRL 1091
Score = 21.6 bits (44), Expect = 3.6
Identities = 12/23 (52%), Positives = 14/23 (61%), Gaps = 0/23 (0%)
Query 123 LRQQQQRLSQQIVAAADEIARLA 145
LRQQ L Q++VAA A LA
Sbjct 988 LRQQLDYLGQRVVAADSGEAALA 1010
>P26762 Virulence sensor protein BvgS [Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50)]
Length=1238
Score = 182 bits (461), Expect = 7e-50
Identities = 146/402 (36%), Positives = 212/402 (53%), Gaps = 37/402 (9%)
Query 412 ELQELVIEHRQARAEAEKASQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPA-LNAQRD 470
E EL+ E A+ A+ A++AK+ FLA MSHEIRTP+ I+G +L PA R
Sbjct 698 ERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEPDRQ 757
Query 471 DLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSG--RVKG 528
++ DS SLL ++ DILD + IEAG ++ R L E +++ G R KG
Sbjct 758 SIQVAYDSARSLLELIGDILDIAKIEAG--KFDLAPVRTALRALPEGAIRVFDGLARQKG 815
Query 529 RPIRLATAI--ADDVPTALMGDPRRIRQVITNLLSNALRFTDEGQIVL--RSRTDGEQWL 584
+ L T I DDV + DP R++QV++NL+ NA++FT EGQ+VL +R DGE
Sbjct 816 IELVLKTDIVGVDDV----LIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAAH 871
Query 585 VE--VEDSGCGIDPAKLAEIFQPFIQV-----SGKRGGTGLGLTISSRLAQAMGGELSAT 637
V+ V D+GCGI A ++F+PF QV +G GTGLGL+IS RL + MGG L
Sbjct 872 VQFSVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMR 931
Query 638 STPEVGSCFCLRLPL----RVATAPVPKTVNQAVRLD---GLRLLLIEDNPLTQRITVEM 690
S P VG+ + L L + A A P QA LR+L+++D+ + +
Sbjct 932 SAPGVGTTVSVDLRLTMVEKSAQATPPAAAAQATPSKPQVSLRVLVVDDHKPNLMLLRQQ 991
Query 691 LNTSGAQVVAIGNAAQALETLQNSEPFAAALVDFDLPDVNGITLARQL--ARQYPS---- 744
L+ G +VVA + AL L + F + D ++P +NG LAR++ A P
Sbjct 992 LDYLGQRVVAADSGEAAL-ALWHEHAFDVVITDCNMPGINGYELARRIRAAEAAPGYGRT 1050
Query 745 -LVLIGFSAHV-IDETLRQRTSSLFRGIIPKPVPREVLGQLL 784
+L GF+A +DE R R + + + KP+ + L Q L
Sbjct 1051 RCILFGFTASAQMDEAQRCRAAGM-DDCLFKPIGVDALRQRL 1091
Score = 21.6 bits (44), Expect = 3.6
Identities = 12/23 (52%), Positives = 14/23 (61%), Gaps = 0/23 (0%)
Query 123 LRQQQQRLSQQIVAAADEIARLA 145
LRQQ L Q++VAA A LA
Sbjct 988 LRQQLDYLGQRVVAADSGEAALA 1010
Lambda K H a alpha
0.318 0.131 0.360 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 10979232
Database: 2c3dcdc55fc16d121cba44547406296a.SwissProt.fasta
Posted date: May 20, 2024 12:22 PM
Number of letters in database: 13,892
Number of sequences in database: 14
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
