Comparative Genomics

Z0696 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 8fbbdba6305b7a2fb05cc1a8a56df3d5.SwissProt.fasta
           18 sequences; 4,828 total letters



Query= Z0696

Length=254
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P10805 Porin thermoregulatory protein EnvY [Escherichia coli (str...  504     0.0   
P33234 HTH-type transcriptional regulator AdiY [Escherichia coli ...  299     2e-106
P37639 HTH-type transcriptional regulator GadX [Escherichia coli ...  146     3e-46 
Q83PR0 HTH-type transcriptional regulator GadX [Shigella flexneri]    145     5e-46 
P58230 HTH-type transcriptional regulator GadX [Escherichia coli ...  145     7e-46 
Q9EYV5 HTH-type transcriptional regulator GadX [Escherichia coli ...  144     1e-45 
Q8FCI6 HTH-type transcriptional regulator GadX [Escherichia coli ...  144     2e-45 
P05052 HTH-type transcriptional regulator AppY [Escherichia coli ...  92.8    5e-26 
Q8FCI7 HTH-type transcriptional regulator GadW [Escherichia coli ...  92.4    6e-26 
P63202 HTH-type transcriptional regulator GadW [Escherichia coli ...  91.3    2e-25 
P63203 HTH-type transcriptional regulator GadW [Shigella flexneri]    91.3    2e-25 
P63201 HTH-type transcriptional regulator GadW [Escherichia coli ...  91.3    2e-25 
P43459 Transcriptional activator PerA [Escherichia coli O127:H6 (...  87.8    6e-24 
P0CL09 Transcriptional regulator sirC [Salmonella typhimurium (st...  87.8    8e-24 
E1WAB2 Transcriptional regulator SirC [Salmonella typhimurium (st...  87.8    8e-24 
P76135 HTH-type transcriptional regulator YdeO [Escherichia coli ...  84.7    6e-23 
P0CL08 Transcriptional regulator HilD [Salmonella typhimurium (st...  85.5    7e-23 
E1WAC0 Transcriptional regulator HilD [Salmonella typhimurium (st...  85.5    7e-23 


>P10805 Porin thermoregulatory protein EnvY [Escherichia coli 
(strain K12)]
Length=253

 Score = 504 bits (1299),  Expect = 0.0
 Identities = 252/253 (99%), Positives = 253/253 (100%), Gaps = 0/253 (0%)

Query  1    MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR  60
            MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR
Sbjct  1    MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR  60

Query  61   NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKPCEAELTRA  120
            NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPS+PCEAELTRA
Sbjct  61   NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSRPCEAELTRA  120

Query  121  LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK  180
            LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK
Sbjct  121  LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK  180

Query  181  KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP  240
            KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP
Sbjct  181  KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP  240

Query  241  LNYLAKQRQKVMW  253
            LNYLAKQRQKVMW
Sbjct  241  LNYLAKQRQKVMW  253


>P33234 HTH-type transcriptional regulator AdiY [Escherichia coli 
(strain K12)]
Length=253

 Score = 299 bits (766),  Expect = 2e-106
 Identities = 143/252 (57%), Positives = 192/252 (76%), Gaps = 0/252 (0%)

Query  1    MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTLNHVLITHINR  60
            M++ S +PC+V+LTEK+V + VN     +L  N++A   C NN+I++S+LN+ L+ HI+ 
Sbjct  1    MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSLNNTLVAHISH  60

Query  61   NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKPCEAELTRA  120
            +II DYL FLNK+L+ +  W R ATP++     TP+VFR+AA HS        E E TRA
Sbjct  61   DIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAAQHSMMPAETESEKERTRA  120

Query  121  LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK  180
            LLFTVLS FL+  +F++L+MY+LR+ V DSV +II+SDI   WNL +VAS LCLSPSLLK
Sbjct  121  LLFTVLSRFLDSKKFVSLMMYMLRNCVSDSVYQIIESDIHKDWNLSMVASCLCLSPSLLK  180

Query  181  KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP  240
            KKLK+ENTSYSQI+T CRMRYAV  L+MD KNI+QV+Q CGY+STSYFISVFK FYG+TP
Sbjct  181  KKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTP  240

Query  241  LNYLAKQRQKVM  252
            L+Y+++ R++ +
Sbjct  241  LHYVSQHRERTV  252


>P37639 HTH-type transcriptional regulator GadX [Escherichia coli 
(strain K12)]
Length=274

 Score = 146 bits (369),  Expect = 3e-46
 Identities = 76/194 (39%), Positives = 123/194 (63%), Gaps = 0/194 (0%)

Query  58   INRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKPCEAEL  117
            ++R+ ++ +L  L +    +    ++++ ++   SR   VF+  A  S+ +  +  E   
Sbjct  54   VSRDTLSLFLPMLKEEALNLHAHKKVSSLLVHHCSRDIPVFQEVAQLSQNKNLRYAEMLR  113

Query  118  TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS  177
             RAL+F +LS FLE   FI LL+ +L+ ++R  VC +I ++I H W L  +AS L +SPS
Sbjct  114  KRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPS  173

Query  178  LLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG  237
            LLKKKL+ E TSYSQ++TECRM+ A+Q++++   +I +VA  CGY S SYFI VF+ +YG
Sbjct  174  LLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYG  233

Query  238  LTPLNYLAKQRQKV  251
            +TP  Y  +  Q++
Sbjct  234  MTPTEYQERSAQRL  247


>Q83PR0 HTH-type transcriptional regulator GadX [Shigella flexneri]
Length=274

 Score = 145 bits (367),  Expect = 5e-46
 Identities = 76/192 (40%), Positives = 121/192 (63%), Gaps = 0/192 (0%)

Query  58   INRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKPCEAEL  117
            ++R+ ++ +L  L +    +    ++++ ++   SR   VF+  A  S+ +  +  E   
Sbjct  54   VSRDTLSLFLPMLKEEALNLHAHKKISSLLVHHCSRDIPVFQEVAQLSQNKNLRYAEMLR  113

Query  118  TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS  177
             RAL+F +LS FLE   FI LL+ +L+ ++R  VC +I ++I H W L  +AS L +SPS
Sbjct  114  KRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPS  173

Query  178  LLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG  237
            LLKKKL+ E TSYSQ++TECRM+ A+Q++++   +I +VA  CGY S SYFI VF+ +YG
Sbjct  174  LLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYG  233

Query  238  LTPLNYLAKQRQ  249
            +TP  Y  +  Q
Sbjct  234  MTPTEYQERSAQ  245


>P58230 HTH-type transcriptional regulator GadX [Escherichia coli 
O157:H7]
Length=274

 Score = 145 bits (366),  Expect = 7e-46
 Identities = 76/192 (40%), Positives = 121/192 (63%), Gaps = 0/192 (0%)

Query  58   INRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKPCEAEL  117
            ++R+ ++ +L  L +    +    ++++ ++   SR   VF+  A  S+ +  +  E   
Sbjct  54   VSRDTLSLFLPMLKEEALNLHAHKKVSSLLVHHCSRDIPVFQEVAQLSQNKNLRYAEMLR  113

Query  118  TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS  177
             RAL+F +LS FLE   FI LL+ +L+ ++R  VC +I ++I H W L  +AS L +SPS
Sbjct  114  KRALIFALLSVFLEDDHFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPS  173

Query  178  LLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG  237
            LLKKKL+ E TSYSQ++TECRM+ A+Q++++   +I +VA  CGY S SYFI VF+ +YG
Sbjct  174  LLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYG  233

Query  238  LTPLNYLAKQRQ  249
            +TP  Y  +  Q
Sbjct  234  MTPTEYQERSAQ  245


>Q9EYV5 HTH-type transcriptional regulator GadX [Escherichia coli 
O127:H6 (strain E2348/69 / EPEC)]
Length=274

 Score = 144 bits (364),  Expect = 1e-45
 Identities = 75/194 (39%), Positives = 124/194 (64%), Gaps = 0/194 (0%)

Query  58   INRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKPCEAEL  117
            ++R+ ++ +L  L +    +    ++ + ++   +R   VF+  A  S+ +  +  E   
Sbjct  54   VSRDTLSLFLPMLKEEALKLHAHKKVPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLR  113

Query  118  TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS  177
             RAL+F +LS FLE ++FI LL+ +L+ ++R  VC +I ++I H W L  +AS L +SPS
Sbjct  114  KRALIFALLSVFLEDTQFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPS  173

Query  178  LLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG  237
            LLKKKL+ E TSYSQ++TECRM+ A+Q++++   +I +VA  CGY S SYFI VF+ +YG
Sbjct  174  LLKKKLREEGTSYSQLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYG  233

Query  238  LTPLNYLAKQRQKV  251
            +TP  Y  +  Q++
Sbjct  234  MTPTEYQERSAQEL  247


>Q8FCI6 HTH-type transcriptional regulator GadX [Escherichia coli 
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=274

 Score = 144 bits (363),  Expect = 2e-45
 Identities = 75/194 (39%), Positives = 124/194 (64%), Gaps = 0/194 (0%)

Query  58   INRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKPCEAEL  117
            ++R+ ++ +L  L +    +    ++ + ++   +R   VF+  A  S+ +  +  E   
Sbjct  54   VSRDTLSLFLPMLKEEALKLHVHKKVPSLLVHHCTRDIPVFQEVAQLSQNKNLRYAEMLR  113

Query  118  TRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPS  177
             RAL+F +LS FLE ++FI LL+ +L+ ++R  VC +I ++I H W L  +AS L +SPS
Sbjct  114  KRALIFALLSVFLEDTQFIPLLLNVLQPNMRTRVCTVINNNIAHEWTLARIASELLMSPS  173

Query  178  LLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYG  237
            LLKKKL+ E TSYSQ++TECRM+ A+Q++++   +I +VA  CGY S SYFI VF+ +YG
Sbjct  174  LLKKKLREEGTSYSQLLTECRMQRALQLIVIYGVSIKRVAVSCGYHSVSYFIYVFRNYYG  233

Query  238  LTPLNYLAKQRQKV  251
            +TP  Y  +  Q++
Sbjct  234  MTPTEYQERSAQEL  247


>P05052 HTH-type transcriptional regulator AppY [Escherichia coli 
(strain K12)]
Length=249

 Score = 92.8 bits (229),  Expect = 5e-26
 Identities = 42/93 (45%), Positives = 67/93 (72%), Gaps = 0/93 (0%)

Query  154  IIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNI  213
            II  +I+  W+L+ +A  +  S SL+KK+L++E TS+++I+ + RMRYA +++  ++ +I
Sbjct  144  IISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSI  203

Query  214  TQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAK  246
              VAQ CGY+STSYFI  FK +YG+TP +Y  K
Sbjct  204  NVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEK  236


>Q8FCI7 HTH-type transcriptional regulator GadW [Escherichia coli 
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=242

 Score = 92.4 bits (228),  Expect = 6e-26
 Identities = 74/240 (31%), Positives = 119/240 (50%), Gaps = 22/240 (9%)

Query  9    CVVILTEKEVEV-------SVNNHATFTLPKNYLAAFA-CNNNVIELSTLNHVLITHINR  60
            C VIL  +  ++       S++N +   L KN    FA C+ +   L  +  + + H  +
Sbjct  5    CSVILVRRSFDIHHEQQKISLHNESILLLDKNLADDFAFCSLDTRRLD-IEELTVCHYLQ  63

Query  61   NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKPCEAELTRA  120
            NI       L +NL  +    RL        +++P +  + A        +     L++ 
Sbjct  64   NIRQ-----LPRNLG-LHSKDRLLI------NQSPPIQLVTAIFDSFNDPRVNSPILSKM  111

Query  121  LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK  180
            L  + LS F  +   I LL   + S+V   V R+I  DI   W LR +A  +  S SL+K
Sbjct  112  LYLSCLSMFSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK  170

Query  181  KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP  240
            KKL++ENT +S+I+   RM  A ++L +    +  +A+ CGYSSTSYFI+ F+ +YG+TP
Sbjct  171  KKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP  230


>P63202 HTH-type transcriptional regulator GadW [Escherichia coli 
O157:H7]
Length=242

 Score = 91.3 bits (225),  Expect = 2e-25
 Identities = 75/240 (31%), Positives = 119/240 (50%), Gaps = 22/240 (9%)

Query  9    CVVILTEKEVEV-------SVNNHATFTLPKNYLAAFA-CNNNVIELSTLNHVLITHINR  60
            C VIL  +  ++       S++N +   L KN    FA C+ +   L  ++ + + H  +
Sbjct  5    CSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLD-IDELTVCHYLQ  63

Query  61   NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKPCEAELTRA  120
            NI       L +NL  +    RL        +++P +  + A       S      L+  
Sbjct  64   NIRQ-----LPRNLG-LHSKDRLLI------NQSPPMPLVTAIFDSFNESGVNSPILSNM  111

Query  121  LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK  180
            L  + LS F  +   I LL   + S+V   V R+I  DI   W LR +A  +  S SL+K
Sbjct  112  LYLSCLSMFSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK  170

Query  181  KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP  240
            KKL++ENT +S+I+   RM  A ++L +    +  +A+ CGYSSTSYFI+ F+ +YG+TP
Sbjct  171  KKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP  230


>P63203 HTH-type transcriptional regulator GadW [Shigella flexneri]
Length=242

 Score = 91.3 bits (225),  Expect = 2e-25
 Identities = 75/240 (31%), Positives = 119/240 (50%), Gaps = 22/240 (9%)

Query  9    CVVILTEKEVEV-------SVNNHATFTLPKNYLAAFA-CNNNVIELSTLNHVLITHINR  60
            C VIL  +  ++       S++N +   L KN    FA C+ +   L  ++ + + H  +
Sbjct  5    CSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLD-IDELTVCHYLQ  63

Query  61   NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKPCEAELTRA  120
            NI       L +NL  +    RL        +++P +  + A       S      L+  
Sbjct  64   NIRQ-----LPRNLG-LHSKDRLLI------NQSPPMPLVTAIFDSFNESGVNSPILSNM  111

Query  121  LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK  180
            L  + LS F  +   I LL   + S+V   V R+I  DI   W LR +A  +  S SL+K
Sbjct  112  LYLSCLSMFSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK  170

Query  181  KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP  240
            KKL++ENT +S+I+   RM  A ++L +    +  +A+ CGYSSTSYFI+ F+ +YG+TP
Sbjct  171  KKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP  230


>P63201 HTH-type transcriptional regulator GadW [Escherichia coli 
(strain K12)]
Length=242

 Score = 91.3 bits (225),  Expect = 2e-25
 Identities = 75/240 (31%), Positives = 119/240 (50%), Gaps = 22/240 (9%)

Query  9    CVVILTEKEVEV-------SVNNHATFTLPKNYLAAFA-CNNNVIELSTLNHVLITHINR  60
            C VIL  +  ++       S++N +   L KN    FA C+ +   L  ++ + + H  +
Sbjct  5    CSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRRLD-IDELTVCHYLQ  63

Query  61   NIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAANHSKQQPSKPCEAELTRA  120
            NI       L +NL  +    RL        +++P +  + A       S      L+  
Sbjct  64   NIRQ-----LPRNLG-LHSKDRLLI------NQSPPMPLVTAIFDSFNESGVNSPILSNM  111

Query  121  LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK  180
            L  + LS F  +   I LL   + S+V   V R+I  DI   W LR +A  +  S SL+K
Sbjct  112  LYLSCLSMFSHKKELIPLLFNSI-STVSGKVERLISFDIAKRWYLRDIAERMYTSESLIK  170

Query  181  KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP  240
            KKL++ENT +S+I+   RM  A ++L +    +  +A+ CGYSSTSYFI+ F+ +YG+TP
Sbjct  171  KKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYFINTFRQYYGVTP  230


>P43459 Transcriptional activator PerA [Escherichia coli O127:H6 
(strain E2348/69 / EPEC)]
Length=274

 Score = 87.8 bits (216),  Expect = 6e-24
 Identities = 43/119 (36%), Positives = 74/119 (62%), Gaps = 0/119 (0%)

Query  125  VLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLK  184
            +LS F + +  + +++     S+ D V ++I+ DI   W L  V+SS+ +S S L+K+L 
Sbjct  144  LLSFFNDYNDIVNVILSASSKSIVDRVIKVIELDISKNWKLGDVSSSMFMSDSCLRKQLN  203

Query  185  NENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY  243
             EN ++ +I+ + +M++A   L   +KNI +++ L G++STSYFI VFK +Y  TP  Y
Sbjct  204  KENLTFKKIMLDIKMKHASLFLRTTDKNIDEISCLVGFNSTSYFIKVFKEYYNTTPKKY  262


>P0CL09 Transcriptional regulator sirC [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=295

 Score = 87.8 bits (216),  Expect = 8e-24
 Identities = 45/123 (37%), Positives = 74/123 (60%), Gaps = 0/123 (0%)

Query  122  LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK  181
            L  ++S F+ +      L   ++ + ++ V  II SD+   W+   VA  L +S S LK+
Sbjct  168  LMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLFMSVSSLKR  227

Query  182  KLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL  241
            KL  E  S+S+I  + RM  A+++L M   NI+QVA +CGY + SYFI++FK  + +TPL
Sbjct  228  KLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPL  287

Query  242  NYL  244
            +++
Sbjct  288  SFM  290


>E1WAB2 Transcriptional regulator SirC [Salmonella typhimurium 
(strain SL1344)]
Length=295

 Score = 87.8 bits (216),  Expect = 8e-24
 Identities = 45/123 (37%), Positives = 74/123 (60%), Gaps = 0/123 (0%)

Query  122  LFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKK  181
            L  ++S F+ +      L   ++ + ++ V  II SD+   W+   VA  L +S S LK+
Sbjct  168  LMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLFMSVSSLKR  227

Query  182  KLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPL  241
            KL  E  S+S+I  + RM  A+++L M   NI+QVA +CGY + SYFI++FK  + +TPL
Sbjct  228  KLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPL  287

Query  242  NYL  244
            +++
Sbjct  288  SFM  290


>P76135 HTH-type transcriptional regulator YdeO [Escherichia coli 
(strain K12)]
Length=253

 Score = 84.7 bits (208),  Expect = 6e-23
 Identities = 48/120 (40%), Positives = 73/120 (61%), Gaps = 2/120 (2%)

Query  121  LLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLK  180
            LLF+ LS F     FI LL   + S V   V  I+     H W L+ +   L +S SLLK
Sbjct  110  LLFSCLSIFAACKGFITLLTNGVLS-VSGKVRNIVNMKPAHPWKLKDICDCLYISESLLK  168

Query  181  KKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTP  240
            KKLK E T++SQI+ + RM++A  ++ ++  ++ ++A+ CGY+STSYFI  F+  +G +P
Sbjct  169  KKLKQEQTTFSQILLDARMQHAKNLIRVEG-SVNKIAEQCGYASTSYFIYAFRKHFGNSP  227


>P0CL08 Transcriptional regulator HilD [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=309

 Score = 85.5 bits (210),  Expect = 7e-23
 Identities = 46/129 (36%), Positives = 68/129 (53%), Gaps = 0/129 (0%)

Query  116  ELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLS  175
            EL    L  +L+ FL       +++   + ++++ V  II S     W L  VA  + +S
Sbjct  176  ELIPYFLLFLLTAFLRLPESYEIILSSAQITLKERVYNIISSSPSRQWKLTDVADHIFMS  235

Query  176  PSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF  235
             S LK+KL  E TS+S I    RM  A ++L + N N+  VA  CGY STSYFI  FK +
Sbjct  236  TSTLKRKLAEEGTSFSDIYLSARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKY  295

Query  236  YGLTPLNYL  244
            +  TP  ++
Sbjct  296  FKTTPSTFI  304


>E1WAC0 Transcriptional regulator HilD [Salmonella typhimurium 
(strain SL1344)]
Length=309

 Score = 85.5 bits (210),  Expect = 7e-23
 Identities = 46/129 (36%), Positives = 68/129 (53%), Gaps = 0/129 (0%)

Query  116  ELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLS  175
            EL    L  +L+ FL       +++   + ++++ V  II S     W L  VA  + +S
Sbjct  176  ELIPYFLLFLLTAFLRLPESYEIILSSAQITLKERVYNIISSSPSRQWKLTDVADHIFMS  235

Query  176  PSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAF  235
             S LK+KL  E TS+S I    RM  A ++L + N N+  VA  CGY STSYFI  FK +
Sbjct  236  TSTLKRKLAEEGTSFSDIYLSARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKY  295

Query  236  YGLTPLNYL  244
            +  TP  ++
Sbjct  296  FKTTPSTFI  304



Lambda      K        H        a         alpha
   0.325    0.134    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 847560


  Database: 8fbbdba6305b7a2fb05cc1a8a56df3d5.SwissProt.fasta
    Posted date:  May 20, 2024  9:21 AM
  Number of letters in database: 4,828
  Number of sequences in database:  18



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40