BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 9f969872d11352a9febd86149cc14da3.SwissProt.fasta
           3 sequences; 621 total letters



Query= Z0378

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P75685 Inner membrane protein RclC [Escherichia coli (strain K12)]    390     6e-145
P44577 Uncharacterized protein HI_0219 [Haemophilus influenzae (s...  139     8e-46 
P46928 Uncharacterized 23.0 kDa protein in purT/mpa1 5'region [Ma...  128     1e-41 


>P75685 Inner membrane protein RclC [Escherichia coli (strain 
K12)]
Length=197

 Score = 390 bits (1001),  Expect = 6e-145
 Identities = 194/197 (98%), Positives = 195/197 (99%), Gaps = 0/197 (0%)

Query  1    MEKYLHLLSRGDKIGLALIRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHP  60
            MEKYLHLLSRGDKIGL LIRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHP
Sbjct  1    MEKYLHLLSRGDKIGLTLIRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHP  60

Query  61   EDYKQYLTHEGEYKPEARAWQSANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLM  120
            EDYKQYLTHEGEYKPEARAWQ+ANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLM
Sbjct  61   EDYKQYLTHEGEYKPEARAWQTANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLM  120

Query  121  AFTTPLVTLSFLITTPEAWVPALGDAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSARE  180
            AFTTPLVTLSFLITTPEAWVPALGDAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSARE
Sbjct  121  AFTTPLVTLSFLITTPEAWVPALGDAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSARE  180

Query  181  ILKQGSNESSSTLKTEY  197
            ILKQ SNESSSTLKTEY
Sbjct  181  ILKQRSNESSSTLKTEY  197


>P44577 Uncharacterized protein HI_0219 [Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=213

 Score = 139 bits (350),  Expect = 8e-46
 Identities = 82/180 (46%), Positives = 101/180 (56%), Gaps = 16/180 (9%)

Query  19   IRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEH-----PED-------YKQY  66
            IR++I IV  WIG LK   YEAD I  FV+NSP  S+ YE      P D       Y  +
Sbjct  30   IRIAIFIVMAWIGGLKVCQYEADGIAHFVSNSPFFSYMYEKGPNLVPNDKGELVMEYTLH  89

Query  67   LTHEGEYKPEARAWQSANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLMAFTTPL  126
               EG+   +   W   N TY  S  +G + V + +L LA   N   GL GGL+ F   +
Sbjct  90   KNPEGKMVAKNIEWHKENGTYTASYIIGAIIVTVGILTLAGIWNATAGLAGGLLTFGMSI  149

Query  127  VTLSFLITTPEAWVPALG----DAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSAREIL  182
            VTLSFLITTPEAWVP LG       +GFPYLSG GRLV+KD +M+AG +   A+ A  IL
Sbjct  150  VTLSFLITTPEAWVPNLGGDLPTPAYGFPYLSGVGRLVIKDIIMMAGGLTAAAECANRIL  209


>P46928 Uncharacterized 23.0 kDa protein in purT/mpa1 5'region 
[Mannheimia haemolytica]
Length=211

 Score = 128 bits (322),  Expect = 1e-41
 Identities = 73/180 (41%), Positives = 98/180 (54%), Gaps = 16/180 (9%)

Query  19   IRLSIAIVFMWIGLLKFVPYEADSITPFVANSPLMSFFYEHPE------------DYKQY  66
            +R++I IV +WIG LK   YEAD I  FV+NSP  S+ Y+               +Y  +
Sbjct  26   VRIAICIVMVWIGGLKVCQYEADGIAHFVSNSPFFSYMYKKGPNLVDDGTGKMVMEYTLH  85

Query  67   LTHEGEYKPEARAWQSANNTYGFSNGLGVVEVIIALLVLANPVNRWLGLLGGLMAFTTPL  126
               EG+   +   W   N TY  S  +G   V + LL L+       G+ GGL+ F   +
Sbjct  86   KNPEGKMVAKNIEWHKENGTYTASYIIGATIVTVGLLTLSGIWFPVSGMAGGLLTFGMSI  145

Query  127  VTLSFLITTPEAWVPALG----DAHHGFPYLSGAGRLVLKDTLMLAGAVMIMADSAREIL  182
            VTLSF+ITTPE WVP LG       HGFPYLS  GRL++KD +M+AG ++  A+ A  IL
Sbjct  146  VTLSFMITTPEIWVPNLGGDMPTPAHGFPYLSAVGRLIVKDVIMMAGGLVAAAECANRIL  205



Lambda      K        H        a         alpha
   0.324    0.140    0.424    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 91290


  Database: 9f969872d11352a9febd86149cc14da3.SwissProt.fasta
    Posted date:  May 20, 2024  9:23 AM
  Number of letters in database: 621
  Number of sequences in database:  3



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40