BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 886c5b2e8f17dc4dbfaef7558914100d.SwissProt.fasta
3 sequences; 1,968 total letters
Query= Z0152
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
P37050 Uncharacterized fimbrial-like protein YadN [Escherichia co... 119 1e-37
P18103 K99 fimbrial protein [Escherichia coli] 39.7 6e-08
D2TV88 Autotransporter CRAC [Citrobacter rodentium (strain ICC168)] 38.1 4e-07
>P37050 Uncharacterized fimbrial-like protein YadN [Escherichia
coli (strain K12)]
Length=194
Score = 119 bits (297), Expect = 1e-37
Identities = 79/200 (40%), Positives = 108/200 (54%), Gaps = 18/200 (9%)
Query 7 ALLAAALVMASGSALA-VDGGHIDFNGMVQSGTCKVGVVDTGMHSVTTDGVVTLDTANVT 65
AL L M +G+A A +DGG ++ +G+V TC+ V D G DG++ L TA V
Sbjct 8 ALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETRV-DGG----NKDGLILLQTATVG 62
Query 66 DTFAEVSATAVGLLPKEFMISVEC---DPGAPKNAELTMGSASYANTSGTLNNNMNITVN 122
+ A V VG K F I+V+C +P A++T GS + N+ GTLNN+M+I
Sbjct 63 EIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFGSVFFGNSKGTLNNDMSIN-- 120
Query 123 GIAPAQNVNIAVHNMKNKAGAAEIKQVHMNNSSEVQELTLDAEGKGQ-YVFNASYVKAPN 181
P+ VNIA+HN+ IKQV +NN +V LDA K Y F ASYV+A
Sbjct 121 --NPSDGVNIALHNIDGST----IKQVQINNPGDVYTKALDATTKSAVYDFKASYVRAVA 174
Query 182 SPAVTAGHVTTNALYTVAYK 201
TAG+V TN YT+ Y+
Sbjct 175 DQTATAGYVKTNTAYTITYQ 194
>P18103 K99 fimbrial protein [Escherichia coli]
Length=181
Score = 39.7 bits (91), Expect = 6e-08
Identities = 49/204 (24%), Positives = 80/204 (39%), Gaps = 31/204 (15%)
Query 4 MKKALLAAAL---VMASGSALAVDGGHIDFNGMVQSGTCKVGVVDTGMHSVTTDGVVTLD 60
MKK LLA L A+ +A A + G I+FNG + S TC + G + T D L
Sbjct 1 MKKTLLAIILGGMAFATTNASA-NTGTINFNGKITSATCTIDPEVNGNRTSTID----LG 55
Query 61 TANVTDTFAEVSATAVGLLPKEFMISVECDPGAPKNAELTMGSASYANTSGTLNNNMNIT 120
A ++ V ++ PG+ T ++ + +L N +
Sbjct 56 QAAISGHGTVVD------------FKLKPAPGSNDCLAKTNARIDWSGSMNSLGFNNTAS 103
Query 121 VNGIAPAQNVNIAVHNMKNKAGAAEIK----QVHMNNSSEVQELTLDAEGKGQYVFNASY 176
N A ++ + N+ N +G A I ++S +Q A+ K
Sbjct 104 GNTAAKGYHMTLRATNVGNGSGGANINTSFTTAEYTHTSAIQSFNYSAQLKKD------- 156
Query 177 VKAPNSPAVTAGHVTTNALYTVAY 200
+AP++ AG TT+A + V Y
Sbjct 157 DRAPSNGGYKAGVFTTSASFLVTY 180
>D2TV88 Autotransporter CRAC [Citrobacter rodentium (strain ICC168)]
Length=1593
Score = 38.1 bits (87), Expect = 4e-07
Identities = 39/158 (25%), Positives = 69/158 (44%), Gaps = 23/158 (15%)
Query 10 AAALVMASGSALAVDGGHIDFNGMVQSGTCKVGVVDTGMHSVTTDGVVTLDTANV--TDT 67
A+ +++ +G L VDGGH N + SG G++ D +T ++ V T+T
Sbjct 538 ASNMLLENGGYLYVDGGHQATNTTINSG----GILSVSGGGTAVD--ITQNSGGVIDTNT 591
Query 68 FAEVSATAVGLLPKEFMISVECDPGAPKNAELTMGSASYANT-----SGTLNNN---MNI 119
+A +S T + F I+ G+ N L G Y N+ + T+NN+ MN+
Sbjct 592 YATLSGTNIN---GSFSIA----NGSASNMLLENGGFLYVNSGHQAMNTTINNSRSTMNV 644
Query 120 TVNGIAPAQNVNIAVHNMKNKAGAAEIKQVHMNNSSEV 157
G A + +N + + G+A ++ + V
Sbjct 645 LGGGSATSTTINSGGYQYVSSGGSATSTTINSGGNQYV 682
Score = 31.2 bits (69), Expect = 7e-05
Identities = 45/190 (24%), Positives = 67/190 (35%), Gaps = 34/190 (18%)
Query 10 AAALVMASGSALAVDGGHIDFNGMVQSG----------TCKVGVVDTGMHSVTTDGVVTL 59
A+ +++ GS L V+GGH N + G + D G V+TDG VT
Sbjct 741 ASNMLLERGS-LYVEGGHQATNTTINGGGSMDVSTDGSATNTTINDGGQMYVSTDGSVTS 799
Query 60 DTANVTDTFAEVSATAVGLLPKEFMISVECDPGAPKNAELTMG-------SASYANT--- 109
N+ + +A E + G+ + G SA ANT
Sbjct 800 TIVNIGGFVNLLGGSATDTTLNEGGRMLVNPQGSATGTIINRGGYQEILRSAGAANTIIN 859
Query 110 -------SGTLNNNMNITVNGIAPAQNVNIAVHNMKNKAGAAEIKQVHMNNSSEVQELTL 162
SG + + G N A N GA ++NN V T+
Sbjct 860 GGQQSVLSGGSATDTTLNSGGAQYINNGGSATDTTLNSGGAQ-----YINNGGSVTNTTI 914
Query 163 DAEGKGQYVF 172
++ G GQYV+
Sbjct 915 NS-GGGQYVY 923
Score = 29.3 bits (64), Expect = 3e-04
Identities = 32/157 (20%), Positives = 58/157 (37%), Gaps = 22/157 (14%)
Query 10 AAALVMASGSALAVDGGHIDFNGMVQSGT--------CKVGVVDTGMHSVTTDGVVTLDT 61
A+ +++ +G L+V GH N + SG V + +++TD TL
Sbjct 190 ASNMLLENGGFLSVLNGHQATNTTINSGGYLSVYGDGSAVDITQNSGGAISTDTSATLSG 249
Query 62 ANVTDTFAEVSATAVGLLPKEFMISVECDPGAPKNAELTMGSASYA-NTSGTLNNNMNIT 120
N+ +F+ +A +L + +L + S A NT N +I+
Sbjct 250 TNINGSFSIAGGSASNMLLEN-------------RGQLNVNSGHQATNTIINSGGNQHIS 296
Query 121 VNGIAPAQNVNIAVHNMKNKAGAAEIKQVHMNNSSEV 157
G A +N A G+A ++ + V
Sbjct 297 GGGSATDTTINSAGFQYVYSGGSATSTTINRGGNQYV 333
Score = 28.1 bits (61), Expect = 7e-04
Identities = 39/199 (20%), Positives = 71/199 (36%), Gaps = 46/199 (23%)
Query 10 AAALVMASGSALAVDGGHIDFNGMVQSGT--------CKVGVVDTGMHSVTTDGVVTLDT 61
A+ +++ +G L V+ GH N + SG V + +++ D TL
Sbjct 392 ASNMLLENGGYLNVNSGHQATNTTINSGGGLRVSGGGTAVDITQNSGGAISADTSATLSG 451
Query 62 ANVTDTFAEVSATAVGLLPKEFMISVECDPGAPKNAELTMGSASYAN-----TSGTLNNN 116
N+ +F+ + +A +L L G + Y N T+ T+N+
Sbjct 452 TNINGSFSIANGSASNML-------------------LENGGSLYVNSGHQATNTTINSG 492
Query 117 MNITVNGIAPAQNVNIAVHNMKNKAGAAEIKQVHMNNSSEVQELTLDAEGKGQYVF--NA 174
+ V+G A ++ +N GA + + + + A G + N
Sbjct 493 GGLRVSGGGTAVDIT------QNSGGAIDTNTYATLSGTNINGSFSIANGSASNMLLENG 546
Query 175 SYVKAPNSPAVTAGHVTTN 193
Y+ V GH TN
Sbjct 547 GYL------YVDGGHQATN 559
Score = 23.9 bits (50), Expect = 0.017
Identities = 39/197 (20%), Positives = 68/197 (35%), Gaps = 13/197 (7%)
Query 11 AALVMASGSALAVDGGHIDFNGMVQSGTCKVGVVDTGMHSVTTDGVVTLDTANVTDTFAE 70
A + SG++L +D G I + T + G DG T+ + + +
Sbjct 1099 ANVTTQSGTSLTLDNGSILTGNVTGDNTGAGDMTVKGASVWHLDGDATVGALTLDNGTVD 1158
Query 71 VSATAVGLLPKEFMISVECDPGAPKNAELTMGSASYANTSGTLNNNMNITVNGIAPAQNV 130
+A L + F N M + ++T LN N N + +N
Sbjct 1159 FRPSATTRLTQAFRPVSLVSESLSGNGTFRMNTDIASHTGDMLNVTGNANGNFVLDIRNT 1218
Query 131 NIAVHNMKNKAGAAEIKQVHMNNSSEVQELT---LDAEGKGQYVFNAS----YVKAPNSP 183
++ + ++ VH + L +DA G +Y N Y+KA +S
Sbjct 1219 -----GLEPVSAGTPLQVVHTGSGDAAFSLNGGKVDA-GTWEYYLNKENTDWYLKADSSQ 1272
Query 184 AVTAGHVTTNALYTVAY 200
T T N + V +
Sbjct 1273 PGTDNPGTDNPVPPVRH 1289
Score = 23.5 bits (49), Expect = 0.022
Identities = 30/137 (22%), Positives = 55/137 (40%), Gaps = 15/137 (11%)
Query 10 AAALVMASGSALAVDGGHIDFNGMVQSGTCKVGVVDTGMH-SVTTDGVVTLDTA------ 62
A + + SG V G + + SG V T + + + G +T DT+
Sbjct 669 ATSTTINSGGNQYVSSGGSATDTTINSGGSLVVFDGTAVDITQNSGGAITADTSATLSGT 728
Query 63 NVTDTFAEVSATAVGLLPKEFMISVECDPGAPKNAELTMGSASYANTSGTLNN------- 115
N+ +F+ + +A +L + + VE A N + G + +T G+ N
Sbjct 729 NINGSFSIANGSASNMLLERGSLYVEGGHQA-TNTTINGGGSMDVSTDGSATNTTINDGG 787
Query 116 NMNITVNGIAPAQNVNI 132
M ++ +G + VNI
Sbjct 788 QMYVSTDGSVTSTIVNI 804
Score = 23.1 bits (48), Expect = 0.029
Identities = 33/190 (17%), Positives = 71/190 (37%), Gaps = 24/190 (13%)
Query 9 LAAALVMASGSALAVDGGHIDFNGMVQSGTCKVGVVDTGMHSVTTDGVVTLDTANVTDTF 68
L A L++ S ALAVD + S + + DT TD + + +
Sbjct 41 LIAGLLLPSAPALAVDYNNETLGSGATSSSMSLNAGDT-----ATDTTINSGGSQRVSSG 95
Query 69 AEVSATAVGLLPKEFMISVECDPGAPKNAELTMGSASYANTSG-----TLNNNMNITVNG 123
++T + +++ S G+ + + G + ++ G T+N+ ++V+G
Sbjct 96 GSATSTTINSGGFQYVSS----GGSATDTTINSGGYQHVSSGGSATDTTINSGGYLSVSG 151
Query 124 IAPAQNVNIAVHNMKNKAGAAEIKQVHMNNSSEVQELTLDAEGKGQYVFNASYVKAPNSP 183
A ++ + + A + ++N S + ++ + N ++ N
Sbjct 152 GGTAVDITQNSGGVIDTNTYATLSGTNINGSFSI----VNGSASNMLLENGGFLSVLN-- 205
Query 184 AVTAGHVTTN 193
GH TN
Sbjct 206 ----GHQATN 211
Score = 23.1 bits (48), Expect = 0.029
Identities = 37/182 (20%), Positives = 67/182 (37%), Gaps = 41/182 (23%)
Query 17 SGSALAVDGGHIDFNGMVQSGTCKVGVVDTGMHSVTTDGVVTLDTANVTDTFAEVSATAV 76
SG L+V GG + SG GV+DT ++ TL N+ +F+ V+ +A
Sbjct 143 SGGYLSVSGGGTAVDITQNSG----GVIDTNTYA-------TLSGTNINGSFSIVNGSAS 191
Query 77 GLLPKEFMISVECDPGAPKNAELTMGSASYANTSGTLNNNMNITVNGIAPAQNVNIAVHN 136
+L + N + T+ T+N+ ++V G A ++
Sbjct 192 NMLLE--------------NGGFLSVLNGHQATNTTINSGGYLSVYGDGSAVDITQNSGG 237
Query 137 MKNKAGAAEIKQVHMNNSSEV---QELTLDAEGKGQYVFNASYVKAPNSPAVTAGHVTTN 193
+ +A + ++N S + + E +GQ N+ GH TN
Sbjct 238 AISTDTSATLSGTNINGSFSIAGGSASNMLLENRGQLNVNS-------------GHQATN 284
Query 194 AL 195
+
Sbjct 285 TI 286
Score = 21.2 bits (43), Expect = 0.12
Identities = 32/169 (19%), Positives = 62/169 (37%), Gaps = 28/169 (17%)
Query 25 GGHIDFNGMVQSGTCKVGVVDTGMHSVTTDGVVTLDTANVTDTFAEVSATAVGLLPKEFM 84
GG++ G G V + ++ T+ TL N+ +F+ +A +L +
Sbjct 346 GGYLSVYG----GGTAVDITQNSGGAIDTNTYATLSGTNINGSFSIAGGSASNMLLEN-- 399
Query 85 ISVECDPGAPKNAELTMGSASYANTSGTLNNNMNITVNGIAPAQNVNIAVHNMKNKAGAA 144
L + S A T+ T+N+ + V+G A ++ + +A
Sbjct 400 -----------GGYLNVNSGHQA-TNTTINSGGGLRVSGGGTAVDITQNSGGAISADTSA 447
Query 145 EIKQVHMNNSSEVQELTLDAEGKGQYVFNASYVKAPNSPAVTAGHVTTN 193
+ ++N S + A G + ++ S V +GH TN
Sbjct 448 TLSGTNINGSFSI------ANGSASNML----LENGGSLYVNSGHQATN 486
Score = 19.2 bits (38), Expect = 0.48
Identities = 18/67 (27%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query 1 MHVMKKALLAAALVMASGSALAVDGGHIDFNGMV-QSGTCKVGVVDTGMHSVTTDGVVTL 59
++ + + A + L +GG+ F+G++ Q G G+ +HS +VTL
Sbjct 1043 LYFLNNSAATFAGTLTGTGTLTQEGGNTRFSGLLSQDG----GIT---LHSGAAMTMVTL 1095
Query 60 D-TANVT 65
ANVT
Sbjct 1096 QANANVT 1102
Score = 16.9 bits (32), Expect = 2.6
Identities = 7/23 (30%), Positives = 13/23 (57%), Gaps = 0/23 (0%)
Query 15 MASGSALAVDGGHIDFNGMVQSG 37
M+ G+A+ D F G +++G
Sbjct 1432 MSDGTAVKGDYHQNGFGGSLEAG 1454
Score = 15.4 bits (28), Expect = 7.9
Identities = 7/21 (33%), Positives = 10/21 (48%), Gaps = 0/21 (0%)
Query 17 SGSALAVDGGHIDFNGMVQSG 37
+GS + GG + QSG
Sbjct 1337 TGSDTRISGGAGSGYSLTQSG 1357
Score = 15.4 bits (28), Expect = 7.9
Identities = 9/27 (33%), Positives = 14/27 (52%), Gaps = 4/27 (15%)
Query 102 GSASYANTSG----TLNNNMNITVNGI 124
GS++ +T G T NN V+G+
Sbjct 1392 GSSTVGSTGGGLYATWFNNDGYYVDGV 1418
Lambda K H a alpha
0.315 0.127 0.354 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 306405
Database: 886c5b2e8f17dc4dbfaef7558914100d.SwissProt.fasta
Posted date: Jun 1, 2024 1:09 PM
Number of letters in database: 1,968
Number of sequences in database: 3
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
