Comparative Genomics

Z5930 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 206591d301113504f9b13f976c1e2348.SwissProt.fasta
           17 sequences; 8,648 total letters



Query= Z5930

Length=149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

C4ZT19 Probable RNA 2'-phosphotransferase [Escherichia coli (stra...  132     6e-43
B7LXP0 Probable RNA 2'-phosphotransferase [Escherichia coli O8 (s...  132     6e-43
B7LDY6 Probable RNA 2'-phosphotransferase [Escherichia coli (stra...  132     6e-43
A7ZVN0 Probable RNA 2'-phosphotransferase [Escherichia coli O139:...  132     6e-43
P39380 RNA 2'-phosphotransferase [Escherichia coli (strain K12)]      132     6e-43
B7MMM2 Probable RNA 2'-phosphotransferase [Escherichia coli O45:K...  132     8e-43
B1LDT4 Probable RNA 2'-phosphotransferase [Escherichia coli (stra...  130     2e-42
A8A858 Probable RNA 2'-phosphotransferase [Escherichia coli O9:H4...  130     2e-42
B2TYV0 Probable RNA 2'-phosphotransferase [Shigella boydii seroty...  130     4e-42
Q0T8X6 Probable RNA 2'-phosphotransferase [Escherichia coli O6:K1...  129     7e-42
Q02V26 Probable RNA 2'-phosphotransferase [Pseudomonas aeruginosa...  77.0    2e-21
C6DJM6 Probable RNA 2'-phosphotransferase [Pectobacterium carotov...  76.6    2e-21
Q9I778 Probable RNA 2'-phosphotransferase [Pseudomonas aeruginosa...  75.9    4e-21
A6UXB5 Probable RNA 2'-phosphotransferase [Pseudomonas aeruginosa...  74.3    2e-20
P04275 von Willebrand factor [Homo sapiens]                           38.1    8e-07
Q8CIZ8 von Willebrand factor [Mus musculus]                           37.4    1e-06
Q62935 von Willebrand factor [Rattus norvegicus]                      33.9    2e-05


>C4ZT19 Probable RNA 2'-phosphotransferase [Escherichia coli (strain 
K12 / MC4100 / BW2952)]
Length=184

 Score = 132 bits (331),  Expect = 6e-43
 Identities = 66/67 (99%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  35   MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDT  94
            MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWA+IDKLILCAQKAGKRLTRALLDT
Sbjct  1    MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT  60

Query  95   VVATSDK  101
            VVATSDK
Sbjct  61   VVATSDK  67


>B7LXP0 Probable RNA 2'-phosphotransferase [Escherichia coli O8 
(strain IAI1)]
Length=184

 Score = 132 bits (331),  Expect = 6e-43
 Identities = 66/67 (99%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  35   MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDT  94
            MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWA+IDKLILCAQKAGKRLTRALLDT
Sbjct  1    MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT  60

Query  95   VVATSDK  101
            VVATSDK
Sbjct  61   VVATSDK  67


>B7LDY6 Probable RNA 2'-phosphotransferase [Escherichia coli (strain 
55989 / EAEC)]
Length=184

 Score = 132 bits (331),  Expect = 6e-43
 Identities = 66/67 (99%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  35   MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDT  94
            MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWA+IDKLILCAQKAGKRLTRALLDT
Sbjct  1    MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT  60

Query  95   VVATSDK  101
            VVATSDK
Sbjct  61   VVATSDK  67


>A7ZVN0 Probable RNA 2'-phosphotransferase [Escherichia coli O139:H28 
(strain E24377A / ETEC)]
Length=184

 Score = 132 bits (331),  Expect = 6e-43
 Identities = 66/67 (99%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  35   MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDT  94
            MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWA+IDKLILCAQKAGKRLTRALLDT
Sbjct  1    MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT  60

Query  95   VVATSDK  101
            VVATSDK
Sbjct  61   VVATSDK  67


>P39380 RNA 2'-phosphotransferase [Escherichia coli (strain K12)]
Length=184

 Score = 132 bits (331),  Expect = 6e-43
 Identities = 66/67 (99%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  35   MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDT  94
            MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWA+IDKLILCAQKAGKRLTRALLDT
Sbjct  1    MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT  60

Query  95   VVATSDK  101
            VVATSDK
Sbjct  61   VVATSDK  67


>B7MMM2 Probable RNA 2'-phosphotransferase [Escherichia coli O45:K1 
(strain S88 / ExPEC)]
Length=194

 Score = 132 bits (331),  Expect = 8e-43
 Identities = 66/67 (99%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  35   MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDT  94
            MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWA+IDKLILCAQKAGKRLTRALLDT
Sbjct  1    MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT  60

Query  95   VVATSDK  101
            VVATSDK
Sbjct  61   VVATSDK  67


>B1LDT4 Probable RNA 2'-phosphotransferase [Escherichia coli (strain 
SMS-3-5 / SECEC)]
Length=194

 Score = 130 bits (328),  Expect = 2e-42
 Identities = 65/67 (97%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  35   MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDT  94
            MAKYNEKELADTSKFLSFVLRHKPE+IGIVLDREGWA+IDKLILCAQKAGKRLTRALLDT
Sbjct  1    MAKYNEKELADTSKFLSFVLRHKPESIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT  60

Query  95   VVATSDK  101
            VVATSDK
Sbjct  61   VVATSDK  67


>A8A858 Probable RNA 2'-phosphotransferase [Escherichia coli O9:H4 
(strain HS)]
Length=184

 Score = 130 bits (327),  Expect = 2e-42
 Identities = 65/67 (97%), Positives = 66/67 (99%), Gaps = 0/67 (0%)

Query  35   MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDT  94
            MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWA+IDKLILCAQKAGKRLTR LLDT
Sbjct  1    MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRTLLDT  60

Query  95   VVATSDK  101
            VVATSDK
Sbjct  61   VVATSDK  67


>B2TYV0 Probable RNA 2'-phosphotransferase [Shigella boydii serotype 
18 (strain CDC 3083-94 / BS512)]
Length=184

 Score = 130 bits (326),  Expect = 4e-42
 Identities = 65/67 (97%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  35   MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDT  94
            MAK+NEKELADTSKFLSFVLRHKPEAIGIVLDREGWA+IDKLILCAQKAGKRLTRALLDT
Sbjct  1    MAKHNEKELADTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT  60

Query  95   VVATSDK  101
            VVATSDK
Sbjct  61   VVATSDK  67


>Q0T8X6 Probable RNA 2'-phosphotransferase [Escherichia coli O6:K15:H31 
(strain 536 / UPEC)]
Length=184

 Score = 129 bits (324),  Expect = 7e-42
 Identities = 64/67 (96%), Positives = 67/67 (100%), Gaps = 0/67 (0%)

Query  35   MAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDT  94
            MAKYN+KELA+TSKFLSFVLRHKPEAIGIVLDREGWA+IDKLILCAQKAGKRLTRALLDT
Sbjct  1    MAKYNDKELAETSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDT  60

Query  95   VVATSDK  101
            VVATSDK
Sbjct  61   VVATSDK  67


>Q02V26 Probable RNA 2'-phosphotransferase [Pseudomonas aeruginosa 
(strain UCBPP-PA14)]
Length=182

 Score = 77.0 bits (188),  Expect = 2e-21
 Identities = 39/63 (62%), Positives = 47/63 (75%), Gaps = 0/63 (0%)

Query  39   NEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDTVVAT  98
            + K L DTSKFLS+VLRH+PEAIG+ LD EGWA+ID LI  A + G+ L RALL  VV  
Sbjct  2    DRKTLDDTSKFLSYVLRHQPEAIGLKLDGEGWADIDALIAGAARDGRALDRALLGAVVEN  61

Query  99   SDK  101
            +DK
Sbjct  62   NDK  64


>C6DJM6 Probable RNA 2'-phosphotransferase [Pectobacterium carotovorum 
subsp. carotovorum (strain PC1)]
Length=186

 Score = 76.6 bits (187),  Expect = 2e-21
 Identities = 37/58 (64%), Positives = 45/58 (78%), Gaps = 0/58 (0%)

Query  44   ADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDTVVATSDK  101
            AD SKFLS+VLRHKPEAIG+ L+  GWANI +LI CA K G+ LTR ++ +VV  SDK
Sbjct  7    ADVSKFLSYVLRHKPEAIGLTLNSGGWANIAELISCAAKDGRLLTREVIQSVVDNSDK  64


>Q9I778 Probable RNA 2'-phosphotransferase [Pseudomonas aeruginosa 
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=182

 Score = 75.9 bits (185),  Expect = 4e-21
 Identities = 38/63 (60%), Positives = 46/63 (73%), Gaps = 0/63 (0%)

Query  39   NEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDTVVAT  98
            + K L DTSKFLS+VLRH+PEAIG+ LD EGWA+ID LI  A + G+ L R LL  VV  
Sbjct  2    DRKTLDDTSKFLSYVLRHQPEAIGLTLDGEGWADIDALIAGAARDGRALDRMLLGAVVEN  61

Query  99   SDK  101
            +DK
Sbjct  62   NDK  64


>A6UXB5 Probable RNA 2'-phosphotransferase [Pseudomonas aeruginosa 
(strain PA7)]
Length=182

 Score = 74.3 bits (181),  Expect = 2e-20
 Identities = 37/63 (59%), Positives = 47/63 (75%), Gaps = 0/63 (0%)

Query  39   NEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDTVVAT  98
            + K L DTS+FLS VLRH+PEAIG+ LD EGWA+ID LI  A + G+ L RALL  V+ +
Sbjct  2    DRKTLDDTSRFLSHVLRHQPEAIGLTLDGEGWADIDALIAGAARDGRALDRALLGAVLRS  61

Query  99   SDK  101
            +DK
Sbjct  62   NDK  64


>P04275 von Willebrand factor [Homo sapiens]
Length=2813

 Score = 38.1 bits (87),  Expect = 8e-07
 Identities = 31/101 (31%), Positives = 50/101 (50%), Gaps = 9/101 (9%)

Query  25    KNRKSRDE----NAMAKYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCA  80
             K+RK   E     +  KY   ++A TS+ L + L      I   +DR   + I  L++ +
Sbjct  1332  KDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQ----IFSKIDRPEASRITLLLMAS  1387

Query  81    QKAGKRLTRALLDTVVATSDKSVLVIPVMVGASARFRGIRL  121
             Q+  +R++R  +  V     K V+VIPV +G  A  + IRL
Sbjct  1388  QEP-QRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRL  1427


 Score = 17.3 bits (33),  Expect = 5.9
 Identities = 7/13 (54%), Positives = 8/13 (62%), Gaps = 0/13 (0%)

Query  65    LDREGWANIDKLI  77
             L+R GW N   LI
Sbjct  1639  LERIGWPNAPILI  1651


>Q8CIZ8 von Willebrand factor [Mus musculus]
Length=2813

 Score = 37.4 bits (85),  Expect = 1e-06
 Identities = 29/85 (34%), Positives = 43/85 (51%), Gaps = 5/85 (6%)

Query  37    KYNEKELADTSKFLSFVLRHKPEAIGIVLDREGWANIDKLILCAQKAGKRLTRALLDTVV  96
             KY   ++A TS+ L + L      I   +DR   ++I  L+L A +   R+ R L+  V 
Sbjct  1348  KYTGSQVASTSEVLKYTLFQ----IFGKIDRPEASHIT-LLLTASQEPPRMARNLVRYVQ  1402

Query  97    ATSDKSVLVIPVMVGASARFRGIRL  121
                 K V+VIPV +G  A  + IRL
Sbjct  1403  GLKKKKVIVIPVGIGPHASLKQIRL  1427


>Q62935 von Willebrand factor [Rattus norvegicus]
Length=430

 Score = 33.9 bits (76),  Expect = 2e-05
 Identities = 26/91 (29%), Positives = 41/91 (45%), Gaps = 17/91 (19%)

Query  37   KYNEKELADTSKFLSFVLRH------KPEAIGIVLDREGWANIDKLILCAQKAGKRLTRA  90
            KY   +LA TS+ L + L        +PEA  ++L           +L A +  +R+ R 
Sbjct  123  KYVGSQLASTSEVLKYTLFQIFGKIDRPEASRVIL-----------LLTASQEPQRMARY  171

Query  91   LLDTVVATSDKSVLVIPVMVGASARFRGIRL  121
                +     K V++IPV +G  A  + IRL
Sbjct  172  FTRYLQGFKKKKVILIPVGIGPHANLKQIRL  202


 Score = 18.9 bits (37),  Expect = 1.7
 Identities = 8/27 (30%), Positives = 17/27 (63%), Gaps = 1/27 (4%)

Query  103  VLVIPVMVGASARFRGI-RLRRSLFPL  128
            + V+P+ VG+ A  + + R+ R + P+
Sbjct  398  IQVVPIGVGSRANLQELERISRPITPI  424



Lambda      K        H        a         alpha
   0.328    0.137    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 829500


  Database: 206591d301113504f9b13f976c1e2348.SwissProt.fasta
    Posted date:  May 20, 2024  10:59 AM
  Number of letters in database: 8,648
  Number of sequences in database:  17



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40