BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: b20c87ae6408f271506b138cc3c75010.SwissProt.fasta
           3 sequences; 706 total letters



Query= Z5788

Length=134
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AF76 Uncharacterized protein YjfI [Escherichia coli (strain K12)]   259     3e-95
P0AF77 Uncharacterized protein YjfI [Escherichia coli O157:H7]        259     3e-95
Q8DLI1 ATP-dependent Clp protease ATP-binding subunit ClpX [Therm...  33.1    2e-06


>P0AF76 Uncharacterized protein YjfI [Escherichia coli (strain 
K12)]
Length=133

 Score = 259 bits (662),  Expect = 3e-95
 Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%)

Query  1    MTWNPLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINILFTSRQMIIETFICPVS  60
            MTWNPLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINILFTSRQMIIETFICPVS
Sbjct  1    MTWNPLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINILFTSRQMIIETFICPVS  60

Query  61   SISNPDEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDN  120
            SISNPDEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDN
Sbjct  61   SISNPDEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDN  120

Query  121  ALDLAEITEEYSH  133
            ALDLAEITEEYSH
Sbjct  121  ALDLAEITEEYSH  133


>P0AF77 Uncharacterized protein YjfI [Escherichia coli O157:H7]
Length=133

 Score = 259 bits (662),  Expect = 3e-95
 Identities = 133/133 (100%), Positives = 133/133 (100%), Gaps = 0/133 (0%)

Query  1    MTWNPLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINILFTSRQMIIETFICPVS  60
            MTWNPLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINILFTSRQMIIETFICPVS
Sbjct  1    MTWNPLALATALQTVPEQNIDVTNSENALIIKMNDYGDLQINILFTSRQMIIETFICPVS  60

Query  61   SISNPDEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDN  120
            SISNPDEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDN
Sbjct  61   SISNPDEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDN  120

Query  121  ALDLAEITEEYSH  133
            ALDLAEITEEYSH
Sbjct  121  ALDLAEITEEYSH  133


>Q8DLI1 ATP-dependent Clp protease ATP-binding subunit ClpX [Thermosynechococcus 
vestitus (strain NIES-2133 / IAM M-273 / 
BP-1)]
Length=440

 Score = 33.1 bits (74),  Expect = 2e-06
 Identities = 20/67 (30%), Positives = 36/67 (54%), Gaps = 7/67 (10%)

Query  69   NTFLLRNQKMMPLSSV-------GISSVQQEEYYIVFGALSLKSSLEDILLEITSLVDNA  121
            N  L + QK+M + SV        + ++ QE Y    GA +L++ +E+I+L++   + + 
Sbjct  348  NALLKQYQKLMRMDSVELRFEPAAVEAIAQEAYRRKTGARALRAIVEEIMLDVMYELPSR  407

Query  122  LDLAEIT  128
             DL E T
Sbjct  408  KDLRECT  414


 Score = 13.5 bits (23),  Expect = 7.0
 Identities = 8/37 (22%), Positives = 15/37 (41%), Gaps = 0/37 (0%)

Query  66   DEFNTFLLRNQKMMPLSSVGISSVQQEEYYIVFGALS  102
            DE +    +++       V    VQQ    I+ G ++
Sbjct  202  DEIDKIARKSENPSITRDVSGEGVQQALLKILEGTIA  238



Lambda      K        H        a         alpha
   0.321    0.135    0.374    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 67824


  Database: b20c87ae6408f271506b138cc3c75010.SwissProt.fasta
    Posted date:  May 20, 2024  12:21 PM
  Number of letters in database: 706
  Number of sequences in database:  3



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40