BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 6aaaffa6429ecdd90be950564fba7037.SwissProt.fasta
6 sequences; 1,599 total letters
Query= Z5525
Length=120
Score E
Sequences producing significant alignments: (Bits) Value
P0AF42 Inner membrane protein YijD [Escherichia coli O157:H7] 234 1e-85
P0AF41 Inner membrane protein YijD [Escherichia coli O6:H1 (strai... 234 1e-85
P0AF40 Inner membrane protein YijD [Escherichia coli (strain K12)] 234 1e-85
P0ABG5 Probable peptidoglycan glycosyltransferase FtsW [Escherich... 34.7 1e-06
P0ABG6 Probable peptidoglycan glycosyltransferase FtsW [Escherich... 34.7 1e-06
P0ABG4 Probable peptidoglycan glycosyltransferase FtsW [Escherich... 34.7 1e-06
>P0AF42 Inner membrane protein YijD [Escherichia coli O157:H7]
Length=119
Score = 234 bits (598), Expect = 1e-85
Identities = 119/119 (100%), Positives = 119/119 (100%), Gaps = 0/119 (0%)
Query 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60
MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP
Sbjct 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60
Query 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE 119
VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE
Sbjct 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE 119
>P0AF41 Inner membrane protein YijD [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=119
Score = 234 bits (598), Expect = 1e-85
Identities = 119/119 (100%), Positives = 119/119 (100%), Gaps = 0/119 (0%)
Query 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60
MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP
Sbjct 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60
Query 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE 119
VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE
Sbjct 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE 119
>P0AF40 Inner membrane protein YijD [Escherichia coli (strain
K12)]
Length=119
Score = 234 bits (598), Expect = 1e-85
Identities = 119/119 (100%), Positives = 119/119 (100%), Gaps = 0/119 (0%)
Query 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60
MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP
Sbjct 1 MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP 60
Query 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE 119
VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE
Sbjct 61 VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE 119
>P0ABG5 Probable peptidoglycan glycosyltransferase FtsW [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=414
Score = 34.7 bits (78), Expect = 1e-06
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query 11 LLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAAC 70
L++ LV G S+ G A+ + + + P L+++C YL R L
Sbjct 122 LMIVLVVGSSVKG--ASRWIDLGLLRIQPAELTKLSLFCYIANYLVRKGDEVRNNLRGFL 179
Query 71 FILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKM 110
+GV+L V+ PD+G+ V ++ M+F GAK+
Sbjct 180 KPMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAKL 219
Score = 14.6 bits (26), Expect = 5.9
Identities = 6/9 (67%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 65 GLAAACFIL 73
GLAA FI+
Sbjct 54 GLAAIGFIM 62
>P0ABG6 Probable peptidoglycan glycosyltransferase FtsW [Escherichia
coli O157:H7]
Length=414
Score = 34.7 bits (78), Expect = 1e-06
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query 11 LLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAAC 70
L++ LV G S+ G A+ + + + P L+++C YL R L
Sbjct 122 LMIVLVVGSSVKG--ASRWIDLGLLRIQPAELTKLSLFCYIANYLVRKGDEVRNNLRGFL 179
Query 71 FILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKM 110
+GV+L V+ PD+G+ V ++ M+F GAK+
Sbjct 180 KPMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAKL 219
Score = 14.6 bits (26), Expect = 5.9
Identities = 6/9 (67%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 65 GLAAACFIL 73
GLAA FI+
Sbjct 54 GLAAIGFIM 62
>P0ABG4 Probable peptidoglycan glycosyltransferase FtsW [Escherichia
coli (strain K12)]
Length=414
Score = 34.7 bits (78), Expect = 1e-06
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query 11 LLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMPVGLPGLAAAC 70
L++ LV G S+ G A+ + + + P L+++C YL R L
Sbjct 122 LMIVLVVGSSVKG--ASRWIDLGLLRIQPAELTKLSLFCYIANYLVRKGDEVRNNLRGFL 179
Query 71 FILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKM 110
+GV+L V+ PD+G+ V ++ M+F GAK+
Sbjct 180 KPMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAKL 219
Score = 14.6 bits (26), Expect = 5.9
Identities = 6/9 (67%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 65 GLAAACFIL 73
GLAA FI+
Sbjct 54 GLAAIGFIM 62
Lambda K H a alpha
0.334 0.145 0.438 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 127710
Database: 6aaaffa6429ecdd90be950564fba7037.SwissProt.fasta
Posted date: May 20, 2024 12:59 PM
Number of letters in database: 1,599
Number of sequences in database: 6
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
