BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 0dde0d6caef21a781f12a4c38541af66.TrEMBL.fasta
           3 sequences; 357 total letters



Query= Z5525

Length=120
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A0E2KYC7 Inner membrane protein yijD [Escherichia coli (strain ...  234     3e-86
E1JFD3 Inner membrane protein YijD [Escherichia coli MS 124-1]        234     3e-86
A0A0I2RHZ3 Inner membrane protein yijD [Shigella sonnei]              234     3e-86


>A0A0E2KYC7 Inner membrane protein yijD [Escherichia coli (strain 
UMEA 3162-1)]
Length=119

 Score = 234 bits (598),  Expect = 3e-86
 Identities = 119/119 (100%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  1    MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP  60
            MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP
Sbjct  1    MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP  60

Query  61   VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE  119
            VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE
Sbjct  61   VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE  119


>E1JFD3 Inner membrane protein YijD [Escherichia coli MS 124-1]
Length=119

 Score = 234 bits (598),  Expect = 3e-86
 Identities = 119/119 (100%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  1    MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP  60
            MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP
Sbjct  1    MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP  60

Query  61   VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE  119
            VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE
Sbjct  61   VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE  119


>A0A0I2RHZ3 Inner membrane protein yijD [Shigella sonnei]
Length=119

 Score = 234 bits (598),  Expect = 3e-86
 Identities = 119/119 (100%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  1    MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP  60
            MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP
Sbjct  1    MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLVLTVYCLHQRYLNRTMP  60

Query  61   VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE  119
            VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE
Sbjct  61   VGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIMVFWIGAKMRNRKQEVAE  119



Lambda      K        H        a         alpha
   0.334    0.145    0.438    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 29700


  Database: 0dde0d6caef21a781f12a4c38541af66.TrEMBL.fasta
    Posted date:  May 20, 2024  11:01 AM
  Number of letters in database: 357
  Number of sequences in database:  3



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40