BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 9f965a8ab785feedaca8f3929b39b793.SwissProt.fasta
           4 sequences; 528 total letters



Query= Z5466

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AF34 Uncharacterized protein YiiR [Escherichia coli (strain K12)]   308     3e-114
P0AF35 Uncharacterized protein YiiR [Escherichia coli O157:H7]        308     3e-114
P64592 Inner membrane protein YhaI [Escherichia coli (strain K12)]    45.1    4e-11 
P64593 Inner membrane protein YhaI [Escherichia coli O157:H7]         45.1    4e-11 


>P0AF34 Uncharacterized protein YiiR [Escherichia coli (strain 
K12)]
Length=146

 Score = 308 bits (788),  Expect = 3e-114
 Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%)

Query  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60
            MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA
Sbjct  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60

Query  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120
            VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF
Sbjct  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120

Query  121  VGTQGENKYGKDTQDVKYKADNKSSN  146
            VGTQGENKYGKDTQDVKYKADNKSSN
Sbjct  121  VGTQGENKYGKDTQDVKYKADNKSSN  146


>P0AF35 Uncharacterized protein YiiR [Escherichia coli O157:H7]
Length=146

 Score = 308 bits (788),  Expect = 3e-114
 Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%)

Query  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60
            MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA
Sbjct  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60

Query  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120
            VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF
Sbjct  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120

Query  121  VGTQGENKYGKDTQDVKYKADNKSSN  146
            VGTQGENKYGKDTQDVKYKADNKSSN
Sbjct  121  VGTQGENKYGKDTQDVKYKADNKSSN  146


>P64592 Inner membrane protein YhaI [Escherichia coli (strain 
K12)]
Length=118

 Score = 45.1 bits (105),  Expect = 4e-11
 Identities = 38/137 (28%), Positives = 56/137 (41%), Gaps = 35/137 (26%)

Query  5    QWLFS-------FKGRIGRRDFWIW--IGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLL  55
            QW  S       F GR  R+++W++  I      ++ +  L     L   +  + L   L
Sbjct  2    QWYLSVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLELPYLSMLYLLATFL  61

Query  56   WPTAAVTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLI  115
             P  A+ ++RLHD  RSGAWA L  V ++     W +L                LV    
Sbjct  62   -PVLALAIRRLHDTDRSGAWALLFFVPFI----GWLVL----------------LVFFCT  100

Query  116  DLGAFVGTQGENKYGKD  132
            +     GT G N+YG D
Sbjct  101  E-----GTSGSNRYGND  112


>P64593 Inner membrane protein YhaI [Escherichia coli O157:H7]
Length=118

 Score = 45.1 bits (105),  Expect = 4e-11
 Identities = 38/137 (28%), Positives = 56/137 (41%), Gaps = 35/137 (26%)

Query  5    QWLFS-------FKGRIGRRDFWIW--IGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLL  55
            QW  S       F GR  R+++W++  I      ++ +  L     L   +  + L   L
Sbjct  2    QWYLSVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLELPYLSMLYLLATFL  61

Query  56   WPTAAVTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLI  115
             P  A+ ++RLHD  RSGAWA L  V ++     W +L                LV    
Sbjct  62   -PVLALAIRRLHDTDRSGAWALLFFVPFI----GWLVL----------------LVFFCT  100

Query  116  DLGAFVGTQGENKYGKD  132
            +     GT G N+YG D
Sbjct  101  E-----GTSGSNRYGND  112



Lambda      K        H        a         alpha
   0.332    0.143    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 53136


  Database: 9f965a8ab785feedaca8f3929b39b793.SwissProt.fasta
    Posted date:  Jun 1, 2024  6:31 PM
  Number of letters in database: 528
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40