BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: def80c56cb551cf548981c4fdc1967a8.TrEMBL.fasta
           4 sequences; 584 total letters



Query= Z5466

Length=147
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A1S9KHR0 DUF805 domain-containing protein [Shigella dysenteriae]    308     3e-114
E1J517 Inner membrane protein [Escherichia coli MS 124-1]             308     3e-114
A0A1X3IUI9 Putative inner membrane protein [Escherichia coli TA447]   308     3e-114
D6IGJ3 YiiR protein [Escherichia coli B185]                           308     3e-114


>A0A1S9KHR0 DUF805 domain-containing protein [Shigella dysenteriae]
Length=146

 Score = 308 bits (788),  Expect = 3e-114
 Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%)

Query  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60
            MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA
Sbjct  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60

Query  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120
            VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF
Sbjct  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120

Query  121  VGTQGENKYGKDTQDVKYKADNKSSN  146
            VGTQGENKYGKDTQDVKYKADNKSSN
Sbjct  121  VGTQGENKYGKDTQDVKYKADNKSSN  146


>E1J517 Inner membrane protein [Escherichia coli MS 124-1]
Length=146

 Score = 308 bits (788),  Expect = 3e-114
 Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%)

Query  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60
            MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA
Sbjct  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60

Query  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120
            VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF
Sbjct  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120

Query  121  VGTQGENKYGKDTQDVKYKADNKSSN  146
            VGTQGENKYGKDTQDVKYKADNKSSN
Sbjct  121  VGTQGENKYGKDTQDVKYKADNKSSN  146


>A0A1X3IUI9 Putative inner membrane protein [Escherichia coli 
TA447]
Length=146

 Score = 308 bits (788),  Expect = 3e-114
 Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%)

Query  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60
            MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA
Sbjct  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60

Query  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120
            VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF
Sbjct  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120

Query  121  VGTQGENKYGKDTQDVKYKADNKSSN  146
            VGTQGENKYGKDTQDVKYKADNKSSN
Sbjct  121  VGTQGENKYGKDTQDVKYKADNKSSN  146


>D6IGJ3 YiiR protein [Escherichia coli B185]
Length=146

 Score = 308 bits (788),  Expect = 3e-114
 Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%)

Query  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60
            MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA
Sbjct  1    MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDIQTAAFCLVCLLWPTAA  60

Query  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120
            VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF
Sbjct  61   VTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVGRFVPTLILVMMLIDLGAF  120

Query  121  VGTQGENKYGKDTQDVKYKADNKSSN  146
            VGTQGENKYGKDTQDVKYKADNKSSN
Sbjct  121  VGTQGENKYGKDTQDVKYKADNKSSN  146



Lambda      K        H        a         alpha
   0.332    0.143    0.505    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 59048


  Database: def80c56cb551cf548981c4fdc1967a8.TrEMBL.fasta
    Posted date:  Jun 1, 2024  5:02 PM
  Number of letters in database: 584
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40