BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 006b2b0dc74503edafc6a739a21fb0e7.SwissProt.fasta
           2 sequences; 436 total letters



Query= Z5187

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0ADM7 Uncharacterized protein YidX [Shigella flexneri]               439     3e-162
P0ADM6 Uncharacterized protein YidX [Escherichia coli (strain K12)]   439     3e-162


>P0ADM7 Uncharacterized protein YidX [Shigella flexneri]
Length=218

 Score = 439 bits (1130),  Expect = 3e-162
 Identities = 216/218 (99%), Positives = 217/218 (99%), Gaps = 0/218 (0%)

Query  108  MKLNFKGFFKAASLFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGT  167
            MKLNFKGFFKAA LFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGT
Sbjct  1    MKLNFKGFFKAAGLFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGT  60

Query  168  KGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVANDARFVLNAGKKKFTGTISLYY  227
            KGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVA+DARFVLNAGKKKFTGTISLYY
Sbjct  61   KGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVADDARFVLNAGKKKFTGTISLYY  120

Query  228  YWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEY  287
            YWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEY
Sbjct  121  YWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEY  180

Query  288  YSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ  325
            YSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ
Sbjct  181  YSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ  218


>P0ADM6 Uncharacterized protein YidX [Escherichia coli (strain 
K12)]
Length=218

 Score = 439 bits (1130),  Expect = 3e-162
 Identities = 216/218 (99%), Positives = 217/218 (99%), Gaps = 0/218 (0%)

Query  108  MKLNFKGFFKAASLFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGT  167
            MKLNFKGFFKAA LFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGT
Sbjct  1    MKLNFKGFFKAAGLFPLALMLSGCISYALVSHTAKGSSGKYQSQSDTITGLSQAKDSNGT  60

Query  168  KGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVANDARFVLNAGKKKFTGTISLYY  227
            KGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVA+DARFVLNAGKKKFTGTISLYY
Sbjct  61   KGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVADDARFVLNAGKKKFTGTISLYY  120

Query  228  YWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEY  287
            YWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEY
Sbjct  121  YWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKNMDYSKVMAFYHPFKVRFYEY  180

Query  288  YSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ  325
            YSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ
Sbjct  181  YSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ  218



Lambda      K        H        a         alpha
   0.322    0.136    0.408    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 112266


  Database: 006b2b0dc74503edafc6a739a21fb0e7.SwissProt.fasta
    Posted date:  May 20, 2024  10:12 AM
  Number of letters in database: 436
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40