BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: b88007fec2cc891866f1fa762fa9b9aa.SwissProt.fasta
8 sequences; 2,407 total letters
Query= Z4494
Length=264
Score E
Sequences producing significant alignments: (Bits) Value
P42911 N-acetylgalactosamine permease IID component [Escherichia ... 518 0.0
P69805 PTS system mannose-specific EIID component [Escherichia co... 163 9e-53
P69806 PTS system mannose-specific EIID component [Escherichia co... 163 1e-52
P69807 PTS system mannose-specific EIID component [Escherichia co... 163 1e-52
P26382 Fructose permease IID component [Bacillus subtilis (strain... 158 4e-51
Q9RGG2 PTS system sorbose-specific EIID component [Lacticaseibaci... 153 5e-49
P37083 PTS system sorbose-specific EIID component [Klebsiella pne... 149 2e-47
Q9KEJ2 Probable multidrug resistance protein NorM [Halalkalibacte... 35.0 7e-06
>P42911 N-acetylgalactosamine permease IID component [Escherichia
coli (strain K12)]
Length=263
Score = 518 bits (1333), Expect = 0.0
Identities = 262/263 (99%), Positives = 263/263 (100%), Gaps = 0/263 (0%)
Query 1 MGSEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDN 60
MGSEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDN
Sbjct 1 MGSEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDN 60
Query 61 LEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAG 120
LEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAG
Sbjct 61 LEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAG 120
Query 121 ICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGVKAIDKVRENSQMIARSATIL 180
ICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGVKAIDKVRENSQMIARSATIL
Sbjct 121 ICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGVKAIDKVRENSQMIARSATIL 180
Query 181 GITVIGGLIASYVHINVVTSFAIDSTHSVALQQDFFDKVFPNILPMAYTLLMYYFLRVKK 240
GITVIGGLIASYVHINVVTSFAID+THSVALQQDFFDKVFPNILPMAYTLLMYYFLRVKK
Sbjct 181 GITVIGGLIASYVHINVVTSFAIDNTHSVALQQDFFDKVFPNILPMAYTLLMYYFLRVKK 240
Query 241 AHPVLLIGVTFVLSIVCSAFGIL 263
AHPVLLIGVTFVLSIVCSAFGIL
Sbjct 241 AHPVLLIGVTFVLSIVCSAFGIL 263
>P69805 PTS system mannose-specific EIID component [Escherichia
coli (strain K12)]
Length=283
Score = 163 bits (412), Expect = 9e-53
Identities = 95/274 (35%), Positives = 159/274 (58%), Gaps = 18/274 (7%)
Query 4 EISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDNLEF 63
++++ DI + RS+L Q S+N+ERMQA GF ++M+P ++++Y ++ A++ +LEF
Sbjct 12 KLTQSDIRGVFLRSNLFQGSWNFERMQALGFCFSMVPAIRRLYPENNEARKQAIRRHLEF 71
Query 64 INTHPNLVGFLMGLLISMEEKGEN-----RDTIKGLKVALFGPIAGIGDAIFWFTLLPIM 118
NT P + ++G+ +++EE+ N I G+KV L GP+AG+GD IFW T+ P+
Sbjct 72 FNTQPFVAAPILGVTLALEEQRANGAEIDDGAINGIKVGLMGPLAGVGDPIFWGTVRPVF 131
Query 119 AGICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGV-KAIDKVRENS----QMI 173
A + + A G+LLGP+LFF ++ L+ R+ + G + G K ID V++ Q +
Sbjct 132 AALGAGIAMSGSLLGPLLFFILFNLV---RLATRYYGVAYGYSKGIDIVKDMGGGFLQKL 188
Query 174 ARSATILGITVIGGLIASYVHINV--VTSFAIDST--HSVALQQDFFDKVFPNILPMAYT 229
A+ILG+ V+G L+ + H+N+ V S D T V Q D++ P ++P+ T
Sbjct 189 TEGASILGLFVMGALVNKWTHVNIPLVVSRITDQTGKEHVTTVQTILDQLMPGLVPLLLT 248
Query 230 LLMYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL 263
+ LR KK +P+ +I FV+ I A G+L
Sbjct 249 FACMWLLR-KKVNPLWIIVGFFVIGIAGYACGLL 281
>P69806 PTS system mannose-specific EIID component [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=286
Score = 163 bits (412), Expect = 1e-52
Identities = 95/274 (35%), Positives = 159/274 (58%), Gaps = 18/274 (7%)
Query 4 EISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDNLEF 63
++++ DI + RS+L Q S+N+ERMQA GF ++M+P ++++Y ++ A++ +LEF
Sbjct 15 KLTQSDIRGVFLRSNLFQGSWNFERMQALGFCFSMVPAIRRLYPENNEARKQAIRRHLEF 74
Query 64 INTHPNLVGFLMGLLISMEEKGEN-----RDTIKGLKVALFGPIAGIGDAIFWFTLLPIM 118
NT P + ++G+ +++EE+ N I G+KV L GP+AG+GD IFW T+ P+
Sbjct 75 FNTQPFVAAPILGVTLALEEQRANGAEIDDGAINGIKVGLMGPLAGVGDPIFWGTVRPVF 134
Query 119 AGICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGV-KAIDKVRENS----QMI 173
A + + A G+LLGP+LFF ++ L+ R+ + G + G K ID V++ Q +
Sbjct 135 AALGAGIAMSGSLLGPLLFFILFNLV---RLATRYYGVAYGYSKGIDIVKDMGGGFLQKL 191
Query 174 ARSATILGITVIGGLIASYVHINV--VTSFAIDST--HSVALQQDFFDKVFPNILPMAYT 229
A+ILG+ V+G L+ + H+N+ V S D T V Q D++ P ++P+ T
Sbjct 192 TEGASILGLFVMGALVNKWTHVNIPLVVSRITDQTGKEHVTTVQTILDQLMPGLVPLLLT 251
Query 230 LLMYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL 263
+ LR KK +P+ +I FV+ I A G+L
Sbjct 252 FACMWLLR-KKVNPLWIIVGFFVIGIAGYACGLL 284
>P69807 PTS system mannose-specific EIID component [Escherichia
coli O157:H7]
Length=286
Score = 163 bits (412), Expect = 1e-52
Identities = 95/274 (35%), Positives = 159/274 (58%), Gaps = 18/274 (7%)
Query 4 EISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDNLEF 63
++++ DI + RS+L Q S+N+ERMQA GF ++M+P ++++Y ++ A++ +LEF
Sbjct 15 KLTQSDIRGVFLRSNLFQGSWNFERMQALGFCFSMVPAIRRLYPENNEARKQAIRRHLEF 74
Query 64 INTHPNLVGFLMGLLISMEEKGEN-----RDTIKGLKVALFGPIAGIGDAIFWFTLLPIM 118
NT P + ++G+ +++EE+ N I G+KV L GP+AG+GD IFW T+ P+
Sbjct 75 FNTQPFVAAPILGVTLALEEQRANGAEIDDGAINGIKVGLMGPLAGVGDPIFWGTVRPVF 134
Query 119 AGICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGV-KAIDKVRENS----QMI 173
A + + A G+LLGP+LFF ++ L+ R+ + G + G K ID V++ Q +
Sbjct 135 AALGAGIAMSGSLLGPLLFFILFNLV---RLATRYYGVAYGYSKGIDIVKDMGGGFLQKL 191
Query 174 ARSATILGITVIGGLIASYVHINV--VTSFAIDST--HSVALQQDFFDKVFPNILPMAYT 229
A+ILG+ V+G L+ + H+N+ V S D T V Q D++ P ++P+ T
Sbjct 192 TEGASILGLFVMGALVNKWTHVNIPLVVSRITDQTGKEHVTTVQTILDQLMPGLVPLLLT 251
Query 230 LLMYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL 263
+ LR KK +P+ +I FV+ I A G+L
Sbjct 252 FACMWLLR-KKVNPLWIIVGFFVIGIAGYACGLL 284
>P26382 Fructose permease IID component [Bacillus subtilis (strain
168)]
Length=275
Score = 158 bits (400), Expect = 4e-51
Identities = 99/268 (37%), Positives = 159/268 (59%), Gaps = 23/268 (9%)
Query 5 ISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGL--SAAMKDNLE 62
++KK+I + RS+ L SFN+ER+QA G+ + M+P +KK+Y PG + A++ +LE
Sbjct 7 LTKKEIFSMFIRSNFLLGSFNFERVQAMGYCYVMIPAIKKLYG---PGAKRNEALQRHLE 63
Query 63 FINTHPNLVGFLMGLLISMEE-----KGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPI 117
+ NTHP L + G+ +MEE KG + I G+K+ L GPIAG+GD IFW T+ P+
Sbjct 64 WFNTHPWLTAPIFGVTAAMEEEMANNKGIDGKAISGMKIGLMGPIAGVGDPIFWGTIRPV 123
Query 118 MAGICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVG-VKAIDKVRE----NSQM 172
+A + +S A GN+ GP+LFF L+ +R+ + G G VK ++ +++ Q
Sbjct 124 LAALGASLALGGNIAGPLLFF---FLLNAIRLSTKYYGLKYGYVKGMEILQDLAGNRIQK 180
Query 173 IARSATILGITVIGGLIASYVHIN--VVTSFAIDSTHSVALQ--QDFFDKVFPNILPMAY 228
+ A+ILG+ V+G L++ + IN +V S D + V +Q Q+ D + P LP+
Sbjct 181 LTEGASILGLFVMGALVSKWTTINIPIVVSRIKDESGKVDVQTVQNVLDSIMPGALPLGL 240
Query 229 TLLMYYFLRVKKAHPVLLIGVTFVLSIV 256
TLL+ + LR K +P+L+I FV+ I+
Sbjct 241 TLLVAWMLR-KGVNPLLIICGIFVIGIL 267
>Q9RGG2 PTS system sorbose-specific EIID component [Lacticaseibacillus
casei]
Length=282
Score = 153 bits (387), Expect = 5e-49
Identities = 101/272 (37%), Positives = 154/272 (57%), Gaps = 14/272 (5%)
Query 3 SEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDNLE 62
++I+K D+ + + QASFN+ER+ A F M+P +K++Y K AA+K +L
Sbjct 13 TKITKGDMFKTFVFENFQQASFNFERIHALAFCVDMIPTIKRVYSK-KEDQVAALKRHLV 71
Query 63 FINTHPNLVGFLMGLLISMEE---KGENRD--TIKGLKVALFGPIAGIGDAIFWFTLLPI 117
F NT P + G ++G+ +++EE GE D TI KV L GP+AG+GD + W TL PI
Sbjct 72 FFNTTPAMCGPIVGVTMALEEGRAAGEPIDDGTINSFKVGLMGPLAGVGDPLMWGTLRPI 131
Query 118 MAGICSSFASQGNLLGPILFFAVYLLIFFLRVGW--THVGYSVGVKAIDKVREN-SQMIA 174
+A + +S A QG+ LGPILFF + + L + W +G+S G+ + + N Q I
Sbjct 132 LAALGASLALQGSWLGPILFFVAFNAV-RLSLKWYGLQLGFSRGLALVKDMSGNLLQKIT 190
Query 175 RSATILGITVIGGLIASYVHIN---VVTSFAIDSTHSVALQQDFFDKVFPNILPMAYTLL 231
AT+LG+ ++G L+ + IN VV+ ++ +V Q+ D+ P +L + +TLL
Sbjct 191 EGATVLGLFIMGILVTKWTTINVPLVVSKTTVNGKTTVTTLQNILDQFCPGLLALGWTLL 250
Query 232 MYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL 263
Y LR KK P+LLI F + IV GIL
Sbjct 251 CMYLLR-KKVSPILLIFALFGVGIVGYWLGIL 281
>P37083 PTS system sorbose-specific EIID component [Klebsiella
pneumoniae]
Length=274
Score = 149 bits (376), Expect = 2e-47
Identities = 98/272 (36%), Positives = 149/272 (55%), Gaps = 15/272 (6%)
Query 4 EISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDNLEF 63
+I++ D+ + RS+L QASFN+ER+ GF + M+P +K++Y K AA+K +L F
Sbjct 5 KITQGDLVSMFLRSNLQQASFNFERIHGLGFCYDMIPAIKRLYPL-KADQVAALKRHLVF 63
Query 64 INTHPNLVGFLMGLLISMEEKGENR-----DTIKGLKVALFGPIAGIGDAIFWFTLLPIM 118
NT P + G ++ + +MEE N I G+KV L GP+AG+GD + W TL PI
Sbjct 64 FNTTPAVCGPVIAVTAAMEEARANGAAIDDGAINGIKVGLMGPLAGVGDPLVWGTLRPIT 123
Query 119 AGICSSFASQGNLLGPILFFAVYLLIFFLRVGW--THVGYSVGVKAIDKVREN-SQMIAR 175
A + +S A GN+LGP+LFF ++ + L + W +G+ GV + + N Q +
Sbjct 124 AALGASLALSGNILGPLLFFFIFNAV-RLAMKWYGLQLGFRKGVNIVSDMGGNLLQKLTE 182
Query 176 SATILGITVIGGLIASYVHINVVTSFA----IDSTHSVALQQDFFDKVFPNILPMAYTLL 231
A+ILG+ V+G L+ + INV + D Q+ D++ P +L + TLL
Sbjct 183 GASILGLFVMGVLVTKWTTINVPLVVSQTPGADGATVTMTVQNILDQLCPGLLALGLTLL 242
Query 232 MYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL 263
M L KK +PV LI F L I+ +A G L
Sbjct 243 MVRLLN-KKVNPVWLIFALFGLGIIGNALGFL 273
>Q9KEJ2 Probable multidrug resistance protein NorM [Halalkalibacterium
halodurans (strain ATCC BAA-125 / DSM 18197 / FERM
7344 / JCM 9153 / C-125)]
Length=458
Score = 35.0 bits (79), Expect = 7e-06
Identities = 24/86 (28%), Positives = 43/86 (50%), Gaps = 5/86 (6%)
Query 138 FAVYLLIFFLRVGWT---HVGYSVGVKAIDKVRENSQMIARSATILGITVIGGLIASYVH 194
FA +L + L + +T VGY VG K ++ R+ S++ A I+G+ + G+I +
Sbjct 283 FASFLYMIPLSIAFTLTIAVGYEVGAKRVEDARQYSRLGITFALIMGL--VAGVIIYVLR 340
Query 195 INVVTSFAIDSTHSVALQQDFFDKVF 220
V + + DS + +QQ +F
Sbjct 341 APVASLYTNDSQVAWLIQQFLIYSIF 366
Score = 20.0 bits (40), Expect = 0.44
Identities = 34/155 (22%), Positives = 55/155 (35%), Gaps = 35/155 (23%)
Query 134 PILFFAVYLLIF----FLRVGWTHVGYS----------VGVKAIDKVRENSQM------- 172
PI F Y+LIF F R+G GY+ V + + KVR +
Sbjct 172 PINIFFNYVLIFGKLGFPRLGGVGAGYASAITYWFILAVAIVVVVKVRPFTDFQLFKKLY 231
Query 173 ---------IARSATILGITVI--GGLIASYVHINVVTSFAIDSTHSVALQQDFFDKVFP 221
I +G T+ + A+ + A + H A+ F + P
Sbjct 232 HVSLKKWKEILLLGLPIGFTIFFETSIFAAVTLLMSTFDTATIAAHQAAVNFASFLYMIP 291
Query 222 NILPMAYTLLMYYFL---RVKKAHPVLLIGVTFVL 253
+ T+ + Y + RV+ A +G+TF L
Sbjct 292 LSIAFTLTIAVGYEVGAKRVEDARQYSRLGITFAL 326
Score = 17.3 bits (33), Expect = 3.1
Identities = 7/22 (32%), Positives = 13/22 (59%), Gaps = 0/22 (0%)
Query 234 YFLRVKKAHPVLLIGVTFVLSI 255
Y + +KK +LL+G+ +I
Sbjct 231 YHVSLKKWKEILLLGLPIGFTI 252
Lambda K H a alpha
0.330 0.144 0.433 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 467488
Database: b88007fec2cc891866f1fa762fa9b9aa.SwissProt.fasta
Posted date: Jun 1, 2024 2:16 AM
Number of letters in database: 2,407
Number of sequences in database: 8
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
