Comparative Genomics

Z4449 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 5da0a4d6cbaac035e5eb10cebdad43fc.TrEMBL.fasta
           7 sequences; 1,301 total letters



Query= Z4449

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A7U9FUY3 Inner membrane protein YqjA [Escherichia coli TA206]       446     5e-166
A0A1H0QA09 DedA family protein [Shigella sonnei]                      446     5e-166
Q548B7 DedA family general envelope maintenance protein YqjA [Esc...  446     5e-166
C3SUL7 Inner membrane protein YghB [Escherichia coli]                 288     1e-103
E2D2R7 Inner membrane protein YghB [Escherichia coli]                 163     8e-56 
Q9R6R1 Putative alkaline phosphatase [Lactobacillus delbrueckii s...  57.4    4e-14 
A3FKE9 Uncharacterized protein LIN0035 [Listeria innocua]             44.7    2e-10 


>A0A7U9FUY3 Inner membrane protein YqjA [Escherichia coli TA206]
Length=220

 Score = 446 bits (1146),  Expect = 5e-166
 Identities = 220/220 (100%), Positives = 220/220 (100%), Gaps = 0/220 (0%)

Query  1    MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL  60
            MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL
Sbjct  1    MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL  60

Query  61   IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK  120
            IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK
Sbjct  61   IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK  120

Query  121  HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV  180
            HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV
Sbjct  121  HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV  180

Query  181  FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG  220
            FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG
Sbjct  181  FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG  220


>A0A1H0QA09 DedA family protein [Shigella sonnei]
Length=220

 Score = 446 bits (1146),  Expect = 5e-166
 Identities = 220/220 (100%), Positives = 220/220 (100%), Gaps = 0/220 (0%)

Query  1    MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL  60
            MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL
Sbjct  1    MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL  60

Query  61   IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK  120
            IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK
Sbjct  61   IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK  120

Query  121  HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV  180
            HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV
Sbjct  121  HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV  180

Query  181  FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG  220
            FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG
Sbjct  181  FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG  220


>Q548B7 DedA family general envelope maintenance protein YqjA 
[Escherichia coli]
Length=220

 Score = 446 bits (1146),  Expect = 5e-166
 Identities = 220/220 (100%), Positives = 220/220 (100%), Gaps = 0/220 (0%)

Query  1    MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL  60
            MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL
Sbjct  1    MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL  60

Query  61   IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK  120
            IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK
Sbjct  61   IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK  120

Query  121  HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV  180
            HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV
Sbjct  121  HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV  180

Query  181  FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG  220
            FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG
Sbjct  181  FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG  220


>C3SUL7 Inner membrane protein YghB [Escherichia coli]
Length=219

 Score = 288 bits (737),  Expect = 1e-103
 Identities = 135/218 (62%), Positives = 171/218 (78%), Gaps = 0/218 (0%)

Query  1    MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVL  60
            M ++  ++ ALW  DF  LA+P ++ ++YFV+F  LFLENGLLPA+FLPGDSLL+L G L
Sbjct  1    MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLPASFLPGDSLLILAGAL  60

Query  61   IAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHK  120
            IA+G M +  TI +LT AASLGCW+SYIQGRWLGNT+TV+ WL+ LPA YHQRA  +F +
Sbjct  61   IAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGWLAQLPAKYHQRATCMFDR  120

Query  121  HGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPV  180
            HGL ALL GRF+AFVRTLLPT+AG+SGL N RFQFFNW+SGLLWV ++T+ GY L   P 
Sbjct  121  HGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLSGLLWVSVVTSFGYALSMIPF  180

Query  181  FLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGN  218
              ++EDQ+M+ LM+LP+ LL  GL G+L V+ KKKY N
Sbjct  181  VKRHEDQVMTFLMILPIALLTAGLLGTLFVVIKKKYCN  218


>E2D2R7 Inner membrane protein YghB [Escherichia coli]
Length=125

 Score = 163 bits (413),  Expect = 8e-56
 Identities = 77/124 (62%), Positives = 97/124 (78%), Gaps = 0/124 (0%)

Query  95   NTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQ  154
            NT+TV+ WL+ LPA YHQRA  +F +HGL ALL GRF+AFVRTLLPT+AG+SGL N RFQ
Sbjct  1    NTKTVKGWLAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQ  60

Query  155  FFNWMSGLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKK  214
            FFNW+SGLLWV ++T+ GY L   P   ++EDQ+M+ LM+LP+ LL  GL G+L V+ KK
Sbjct  61   FFNWLSGLLWVSVVTSFGYALSMIPFVKRHEDQVMTFLMILPIALLTAGLLGTLFVVIKK  120

Query  215  KYGN  218
            KY N
Sbjct  121  KYCN  124


>Q9R6R1 Putative alkaline phosphatase [Lactobacillus delbrueckii 
subsp. bulgaricus]
Length=204

 Score = 57.4 bits (137),  Expect = 4e-14
 Identities = 47/192 (24%), Positives = 76/192 (40%), Gaps = 17/192 (9%)

Query  30   FVLFVILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQ  89
            +V   +L     + P   +P + +L   G L     +  P  I+  T+ A +G    Y  
Sbjct  14   YVAVALLIAAENIFPP--IPSELILTFTGFL----TLSVPGAIIASTIGAFIGAVTLYWV  67

Query  90   GRWLGNTRTVQNWLSHLPAHYH------QRAHHLFHKHGLSALLIGRFIAFVRTLLPTIA  143
            G +    R  +   S +   +        +  + F+ HG  A   GRFI  VR+L+   A
Sbjct  68   GTFFDQDRLSRFAASKVGRRFGLSPEKITKTENYFNSHGRPATFFGRFIPVVRSLISLPA  127

Query  144  GLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFG  203
            G+S    ARF F+  +   +W  +L   G           Y+  +     L  +VL+ F 
Sbjct  128  GMSRFTLARFSFYTILGTAIWNTVLIYAGRFASSA-----YQQVVQEFEGLSLIVLIAFC  182

Query  204  LAGSLVVLWKKK  215
               + V L KKK
Sbjct  183  AIAAAVYLLKKK  194


 Score = 16.5 bits (31),  Expect = 2.2
 Identities = 9/30 (30%), Positives = 14/30 (47%), Gaps = 0/30 (0%)

Query  14   QDFETLANPSMIGMLYFVLFVILFLENGLL  43
            Q+FE L+   +I        V L  + GL+
Sbjct  168  QEFEGLSLIVLIAFCAIAAAVYLLKKKGLI  197


>A3FKE9 Uncharacterized protein LIN0035 [Listeria innocua]
Length=93

 Score = 44.7 bits (104),  Expect = 2e-10
 Identities = 26/61 (43%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query  29  YFVLFVILFLENGLLPAAFLPGDSLLVLVGVL--IAKGAMGYPQTILLLTVAASLGCWVS  86
           Y +LF+I+F+E GL+   FLPGDSLL   G L  +    +     I+ L +AA LG  V+
Sbjct  30  YIILFLIVFIETGLVVFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWLAAVLGDTVN  89

Query  87  Y  87
           Y
Sbjct  90  Y  90



Lambda      K        H        a         alpha
   0.332    0.146    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 198781


  Database: 5da0a4d6cbaac035e5eb10cebdad43fc.TrEMBL.fasta
    Posted date:  May 20, 2024  5:19 PM
  Number of letters in database: 1,301
  Number of sequences in database:  7



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40