Comparative Genomics

Z3916 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 50e7a97c0538e0902ad4cee6f06eeb4d.SwissProt.fasta
           13 sequences; 1,355 total letters



Query= Z3916

Length=83
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P58218 DinI-like protein Z3916/ECs3483 [Escherichia coli O157:H7]     166     1e-59
P0DUE4 DinI-like protein Z3305/ECs2939 in prophage CP-933V [Esche...  159     5e-57
P0DUE5 DinI-like protein [Enterobacteria phage VT1-Sakai]             159     5e-57
P58217 DinI-like protein Z2083/ECs2153 [Escherichia coli O157:H7]     124     3e-43
Q9S3S0 DNA damage-inducible protein I [Serratia marcescens]           62.8    9e-19
P0ABR4 DNA damage-inducible protein I [Shigella flexneri]             60.8    5e-18
P0ABR2 DNA damage-inducible protein I [Escherichia coli O6:H1 (st...  60.8    5e-18
P0ABR3 DNA damage-inducible protein I [Escherichia coli O157:H7]      60.8    5e-18
P0ABR1 DNA damage-inducible protein I [Escherichia coli (strain K...  60.8    5e-18
C5YUK3 Flap endonuclease 1-A [Sorghum bicolor]                        30.8    6e-06


>P58218 DinI-like protein Z3916/ECs3483 [Escherichia coli O157:H7]
Length=82

 Score = 166 bits (419),  Expect = 1e-59
 Identities = 82/82 (100%), Positives = 82/82 (100%), Gaps = 0/82 (0%)

Query  1   MRIEICIAKEKMTKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDS  60
           MRIEICIAKEKMTKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDS
Sbjct  1   MRIEICIAKEKMTKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDS  60

Query  61  AKTFVQETLKDTWKSADEWFVH  82
           AKTFVQETLKDTWKSADEWFVH
Sbjct  61  AKTFVQETLKDTWKSADEWFVH  82


>P0DUE4 DinI-like protein Z3305/ECs2939 in prophage CP-933V [Escherichia 
coli O157:H7]
Length=82

 Score = 159 bits (402),  Expect = 5e-57
 Identities = 78/81 (96%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MRIEICIAKEKMTKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDS  60
           MR+EICIAKEK+TKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDS
Sbjct  1   MRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDS  60

Query  61  AKTFVQETLKDTWKSADEWFV  81
           AKTFVQETLKDTW+SADEWFV
Sbjct  61  AKTFVQETLKDTWESADEWFV  81


>P0DUE5 DinI-like protein [Enterobacteria phage VT1-Sakai]
Length=82

 Score = 159 bits (402),  Expect = 5e-57
 Identities = 78/81 (96%), Positives = 81/81 (100%), Gaps = 0/81 (0%)

Query  1   MRIEICIAKEKMTKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDS  60
           MR+EICIAKEK+TKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDS
Sbjct  1   MRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDS  60

Query  61  AKTFVQETLKDTWKSADEWFV  81
           AKTFVQETLKDTW+SADEWFV
Sbjct  61  AKTFVQETLKDTWESADEWFV  81


>P58217 DinI-like protein Z2083/ECs2153 [Escherichia coli O157:H7]
Length=80

 Score = 124 bits (312),  Expect = 3e-43
 Identities = 58/71 (82%), Positives = 67/71 (94%), Gaps = 0/71 (0%)

Query  11  KMTKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLK  70
           K+ KMP G+V AL++E+ RR+SKRYDDVEVI+K+TSNDGLSVTRTADKDSAKTFVQETLK
Sbjct  9   KINKMPKGSVPALQQEMLRRVSKRYDDVEVIIKSTSNDGLSVTRTADKDSAKTFVQETLK  68

Query  71  DTWKSADEWFV  81
           DTW+SADEWFV
Sbjct  69  DTWESADEWFV  79


>Q9S3S0 DNA damage-inducible protein I [Serratia marcescens]
Length=79

 Score = 62.8 bits (151),  Expect = 9e-19
 Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 4/80 (5%)

Query  1   MRIEICIAKEKMTKMPNGAVDALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDS  60
           MR+E+ I  +K   +P GA++AL  EL +R+++++ D  V V+    +GLSV   A  D 
Sbjct  1   MRVEVTI--DKTRPLPAGAIEALTGELGKRVNRQFPDAVVHVRYAGANGLSVLGGAKTD-  57

Query  61  AKTFVQETLKDTWKSADEWF  80
            +  ++E L++TW+SADEWF
Sbjct  58  -RDLIEEILQETWESADEWF  76


>P0ABR4 DNA damage-inducible protein I [Shigella flexneri]
Length=81

 Score = 60.8 bits (146),  Expect = 5e-18
 Identities = 36/83 (43%), Positives = 52/83 (63%), Gaps = 6/83 (7%)

Query  1   MRIEICIAKEKMTKMPNGAVDALKEELTRRISKRYDDVE--VIVKATSNDGLSVTRTADK  58
           MRIE+ IAK   + +P GA+DAL  EL+RRI   + D E  V V+  + + LSV     +
Sbjct  1   MRIEVTIAKT--SPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKE  58

Query  59  DSAKTFVQETLKDTWKSADEWFV  81
           D  +  + E L++TW+SAD+WFV
Sbjct  59  DKQR--ISEILQETWESADDWFV  79


>P0ABR2 DNA damage-inducible protein I [Escherichia coli O6:H1 
(strain CFT073 / ATCC 700928 / UPEC)]
Length=81

 Score = 60.8 bits (146),  Expect = 5e-18
 Identities = 36/83 (43%), Positives = 52/83 (63%), Gaps = 6/83 (7%)

Query  1   MRIEICIAKEKMTKMPNGAVDALKEELTRRISKRYDDVE--VIVKATSNDGLSVTRTADK  58
           MRIE+ IAK   + +P GA+DAL  EL+RRI   + D E  V V+  + + LSV     +
Sbjct  1   MRIEVTIAKT--SPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKE  58

Query  59  DSAKTFVQETLKDTWKSADEWFV  81
           D  +  + E L++TW+SAD+WFV
Sbjct  59  DKQR--ISEILQETWESADDWFV  79


>P0ABR3 DNA damage-inducible protein I [Escherichia coli O157:H7]
Length=81

 Score = 60.8 bits (146),  Expect = 5e-18
 Identities = 36/83 (43%), Positives = 52/83 (63%), Gaps = 6/83 (7%)

Query  1   MRIEICIAKEKMTKMPNGAVDALKEELTRRISKRYDDVE--VIVKATSNDGLSVTRTADK  58
           MRIE+ IAK   + +P GA+DAL  EL+RRI   + D E  V V+  + + LSV     +
Sbjct  1   MRIEVTIAKT--SPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKE  58

Query  59  DSAKTFVQETLKDTWKSADEWFV  81
           D  +  + E L++TW+SAD+WFV
Sbjct  59  DKQR--ISEILQETWESADDWFV  79


>P0ABR1 DNA damage-inducible protein I [Escherichia coli (strain 
K12)]
Length=81

 Score = 60.8 bits (146),  Expect = 5e-18
 Identities = 36/83 (43%), Positives = 52/83 (63%), Gaps = 6/83 (7%)

Query  1   MRIEICIAKEKMTKMPNGAVDALKEELTRRISKRYDDVE--VIVKATSNDGLSVTRTADK  58
           MRIE+ IAK   + +P GA+DAL  EL+RRI   + D E  V V+  + + LSV     +
Sbjct  1   MRIEVTIAKT--SPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGATKE  58

Query  59  DSAKTFVQETLKDTWKSADEWFV  81
           D  +  + E L++TW+SAD+WFV
Sbjct  59  DKQR--ISEILQETWESADDWFV  79


>C5YUK3 Flap endonuclease 1-A [Sorghum bicolor]
Length=380

 Score = 30.8 bits (68),  Expect = 6e-06
 Identities = 19/58 (33%), Positives = 27/58 (47%), Gaps = 8/58 (14%)

Query  21   DALKEELTRRISKRYDDVEVIVKATSNDGLSVTRTADKDSAKTFVQETLKDTWKSADE  78
            D  KEEL +R SKR D         +ND        DKD+ +   + T+K T +  D+
Sbjct  92   DMKKEELAKRFSKRED--------ATNDLKEAVEAGDKDAVEKLSKRTVKVTAQHNDD  141


 Score = 13.5 bits (23),  Expect = 7.6
 Identities = 5/14 (36%), Positives = 7/14 (50%), Gaps = 0/14 (0%)

Query  47   NDGLSVTRTADKDS  60
            ND +    + D DS
Sbjct  170  NDKVFAVASEDMDS  183



Lambda      K        H        a         alpha
   0.322    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 59740


  Database: 50e7a97c0538e0902ad4cee6f06eeb4d.SwissProt.fasta
    Posted date:  May 20, 2024  8:44 AM
  Number of letters in database: 1,355
  Number of sequences in database:  13



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40